Wall clock time and date at job start Sat Apr 11 2020 02:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38394 * 120.85873 * 2 1 4 4 C 1.38315 * 119.30861 * 179.97438 * 3 2 1 5 5 N 1.31952 * 121.07971 * 359.97438 * 4 3 2 6 6 C 1.31671 * 121.88183 * 359.77556 * 5 4 3 7 7 C 1.39565 * 120.56149 * 0.49108 * 6 5 4 8 8 C 1.47837 * 120.55962 * 179.77618 * 7 6 5 9 9 O 1.21553 * 119.99978 * 126.39523 * 8 7 6 10 10 N 1.34773 * 119.99934 * 306.67164 * 8 7 6 11 11 C 1.46930 * 120.63119 * 353.44703 * 10 8 7 12 12 C 1.52766 * 109.00630 * 233.58573 * 11 10 8 13 13 C 1.53036 * 109.38562 * 305.58414 * 12 11 10 14 14 C 1.52989 * 109.46216 * 181.26279 * 13 12 11 15 15 C 1.53005 * 109.47228 * 64.93407 * 14 13 12 16 16 N 1.46500 * 109.47285 * 180.02562 * 15 14 13 17 17 C 1.46499 * 120.00041 * 270.00123 * 16 15 14 18 18 C 1.36937 * 120.00049 * 89.99453 * 16 15 14 19 19 H 1.08008 * 119.99773 * 33.91015 * 18 16 15 20 20 C 1.38806 * 120.00346 * 213.90460 * 18 16 15 21 21 N 1.31615 * 120.00063 * 5.50183 * 20 18 16 22 22 Si 1.86804 * 120.00432 * 185.49578 * 20 18 16 23 23 H 1.48508 * 109.46674 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47205 * 120.00026 * 22 20 18 25 25 H 1.48500 * 109.47456 * 240.00615 * 22 20 18 26 26 C 1.53044 * 109.53436 * 61.24264 * 13 12 11 27 27 C 1.46927 * 120.63447 * 173.72949 * 10 8 7 28 28 H 1.09002 * 109.46712 * 274.88168 * 1 2 3 29 29 H 1.08995 * 109.47118 * 34.87891 * 1 2 3 30 30 H 1.08997 * 109.47216 * 154.88336 * 1 2 3 31 31 H 1.08002 * 120.34644 * 359.96004 * 3 2 1 32 32 H 1.07994 * 119.45733 * 180.02562 * 4 3 2 33 33 H 1.08002 * 119.72268 * 180.26629 * 6 5 4 34 34 H 1.09004 * 109.58166 * 353.41762 * 11 10 8 35 35 H 1.08989 * 109.58890 * 113.84225 * 11 10 8 36 36 H 1.09000 * 109.56207 * 185.54983 * 12 11 10 37 37 H 1.08994 * 109.36091 * 65.49897 * 12 11 10 38 38 H 1.09005 * 109.46025 * 301.22768 * 13 12 11 39 39 H 1.09005 * 109.47548 * 184.93068 * 14 13 12 40 40 H 1.09002 * 109.47747 * 304.93144 * 14 13 12 41 41 H 1.09001 * 109.47020 * 299.99650 * 15 14 13 42 42 H 1.08999 * 109.47019 * 60.00214 * 15 14 13 43 43 H 1.09000 * 109.47157 * 85.06646 * 17 16 15 44 44 H 1.09001 * 109.47152 * 205.06349 * 17 16 15 45 45 H 1.09000 * 109.47003 * 325.06525 * 17 16 15 46 46 H 0.97000 * 120.00467 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.49507 * 178.68568 * 26 13 12 48 48 H 1.08988 * 109.52818 * 58.60622 * 26 13 12 49 49 H 1.08996 * 109.58500 * 246.15692 * 27 10 8 50 50 H 1.09005 * 109.58078 * 6.43391 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5995 1.1506 0.0005 5 7 4.2498 0.0025 0.0016 6 6 3.6197 -1.1537 0.0065 7 6 2.2249 -1.2018 0.0005 8 6 1.5176 -2.4999 0.0011 9 8 0.6746 -2.7324 0.8454 10 7 1.8113 -3.4278 -0.9312 11 6 2.7253 -3.1138 -2.0380 12 6 2.0358 -3.4425 -3.3610 13 6 1.5545 -4.8950 -3.3358 14 6 0.8917 -5.2356 -4.6719 15 6 1.9348 -5.1726 -5.7895 16 7 1.3000 -5.4981 -7.0690 17 6 1.2494 -6.8881 -7.5289 18 6 0.7538 -4.5032 -7.8351 19 1 1.2054 -3.5221 -7.8482 20 6 -0.3801 -4.7554 -8.5949 21 7 -0.9933 -5.9158 -8.4968 22 14 -1.0360 -3.4478 -9.7567 23 1 -0.1725 -2.2419 -9.6827 24 1 -1.0335 -3.9734 -11.1455 25 1 -2.4229 -3.0888 -9.3657 26 6 0.5422 -5.0790 -2.2028 27 6 1.2190 -4.7707 -0.8636 28 1 -0.3633 0.0875 1.0240 29 1 -0.3633 0.8430 -0.5876 30 1 -0.3633 -0.9305 -0.4362 31 1 1.6966 2.1345 -0.0006 32 1 4.1558 2.0762 0.0010 33 1 4.1871 -2.0727 0.0115 34 1 2.9786 -2.0539 -2.0130 35 1 3.6322 -3.7107 -1.9435 36 1 2.7390 -3.3065 -4.1826 37 1 1.1823 -2.7787 -3.4984 38 1 2.4054 -5.5567 -3.1735 39 1 0.4715 -6.2402 -4.6235 40 1 0.0965 -4.5186 -4.8763 41 1 2.3550 -4.1680 -5.8380 42 1 2.7299 -5.8896 -5.5851 43 1 0.3820 -7.3838 -7.0929 44 1 1.1711 -6.9086 -8.6159 45 1 2.1573 -7.4063 -7.2202 46 1 -1.7859 -6.0920 -9.0275 47 1 0.1823 -6.1079 -2.2002 48 1 -0.2976 -4.4003 -2.3509 49 1 2.0007 -5.5055 -0.6714 50 1 0.4808 -4.8044 -0.0623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268199708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:12 Heat of formation + Delta-G solvation = -9.874188 kcal Electronic energy + Delta-G solvation = -28782.100810 eV Core-core repulsion = 25001.508046 eV Total energy + Delta-G solvation = -3780.592765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99637 -40.46843 -38.98827 -37.45374 -35.25238 -34.92493 -33.39674 -32.74066 -31.74420 -30.23639 -28.96933 -27.88190 -26.80012 -25.33593 -24.41181 -23.83032 -23.20525 -22.07342 -21.31274 -20.24204 -18.72712 -18.59899 -17.73596 -17.33600 -17.21537 -16.80055 -16.11826 -15.81735 -15.59109 -15.47564 -15.30513 -15.12579 -14.98320 -14.72574 -14.48232 -14.15428 -14.01206 -13.93899 -13.74723 -13.69365 -13.55044 -13.12092 -12.94196 -12.83035 -12.79842 -12.62039 -12.45834 -12.21186 -12.12815 -12.01421 -11.73069 -11.57565 -11.35611 -11.24166 -11.11846 -10.62774 -10.58321 -10.45606 -10.13585 -9.72811 -8.59595 -7.85740 -5.41420 -0.24282 0.15151 1.43646 1.44975 1.48776 1.55126 1.89975 2.49494 2.70991 3.24604 3.30236 3.50410 3.61702 3.68454 3.73680 3.77020 3.90474 3.99922 4.05429 4.11812 4.30781 4.36538 4.41195 4.47105 4.49453 4.57042 4.60584 4.69316 4.72255 4.78988 4.82212 4.83951 4.87703 4.91180 4.98258 5.05593 5.08196 5.10976 5.18894 5.23407 5.27411 5.33074 5.45461 5.55978 5.59695 5.61168 5.66066 5.72989 6.25243 6.41603 6.84906 6.97166 7.18421 7.88876 8.37576 9.19091 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.002755 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.968471 B =10162.660831 C =10903.173864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.010 4.010 3 C -0.171 4.171 4 C 0.117 3.883 5 N -0.507 5.507 6 C 0.136 3.864 7 C -0.200 4.200 8 C 0.566 3.434 9 O -0.572 6.572 10 N -0.599 5.599 11 C 0.110 3.890 12 C -0.125 4.125 13 C -0.073 4.073 14 C -0.114 4.114 15 C 0.150 3.850 16 N -0.621 5.621 17 C 0.174 3.826 18 C -0.264 4.264 19 H 0.064 0.936 20 C -0.046 4.046 21 N -0.935 5.935 22 Si 0.963 3.037 23 H -0.264 1.264 24 H -0.290 1.290 25 H -0.293 1.293 26 C -0.123 4.123 27 C 0.116 3.884 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.172 0.828 32 H 0.192 0.808 33 H 0.173 0.827 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.035 0.965 40 H 0.024 0.976 41 H 0.050 0.950 42 H 0.056 0.944 43 H -0.006 1.006 44 H 0.020 0.980 45 H 0.028 0.972 46 H 0.248 0.752 47 H 0.081 0.919 48 H 0.042 0.958 49 H 0.095 0.905 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.121 11.318 19.243 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.019 4.019 3 C -0.191 4.191 4 C -0.039 4.039 5 N -0.216 5.216 6 C -0.022 4.022 7 C -0.205 4.205 8 C 0.355 3.645 9 O -0.452 6.452 10 N -0.331 5.331 11 C -0.012 4.012 12 C -0.164 4.164 13 C -0.092 4.092 14 C -0.154 4.154 15 C 0.025 3.975 16 N -0.344 5.344 17 C 0.029 3.971 18 C -0.395 4.395 19 H 0.082 0.918 20 C -0.242 4.242 21 N -0.581 5.581 22 Si 0.791 3.209 23 H -0.188 1.188 24 H -0.216 1.216 25 H -0.220 1.220 26 C -0.161 4.161 27 C -0.006 4.006 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.189 0.811 32 H 0.209 0.791 33 H 0.190 0.810 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.054 0.946 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.012 0.988 44 H 0.039 0.961 45 H 0.047 0.953 46 H 0.057 0.943 47 H 0.099 0.901 48 H 0.061 0.939 49 H 0.113 0.887 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.488 11.123 19.570 24.833 hybrid contribution -2.130 0.146 -0.971 2.345 sum 8.358 11.270 18.599 23.298 Atomic orbital electron populations 1.20868 0.89516 1.03202 1.03739 1.20626 0.97456 0.92115 0.91681 1.22340 0.95660 0.98971 1.02098 1.23529 0.92162 0.96999 0.91188 1.67784 1.41171 0.98820 1.13825 1.23112 0.89514 0.97394 0.92183 1.20837 0.96213 0.93677 1.09751 1.18383 0.81427 0.83791 0.80946 1.90755 1.34396 1.80078 1.39956 1.48177 1.46407 1.12775 1.25731 1.21919 0.92487 1.02362 0.84397 1.21878 1.00710 0.96325 0.97437 1.21060 0.98275 0.96773 0.93092 1.21975 0.99057 0.99214 0.95154 1.21075 0.93589 0.98935 0.83930 1.44146 1.67624 1.03699 1.18976 1.20505 0.95039 0.84554 0.96983 1.19465 1.05269 0.93433 1.21343 0.91792 1.26022 0.96511 0.98829 1.02805 1.70166 1.20590 1.24041 1.43310 0.85270 0.77833 0.79457 0.78337 1.18822 1.21643 1.21962 1.21899 0.98005 1.02083 0.94125 1.21685 0.98704 0.82459 0.97725 0.89584 0.88523 0.93340 0.81083 0.79092 0.81032 0.89548 0.88121 0.89388 0.93736 0.89064 0.94578 0.95714 0.93154 0.92543 0.98815 0.96105 0.95330 0.94295 0.90086 0.93916 0.88672 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 9.35 71.23 0.67 -1.48 16 2 C -0.01 -0.20 5.95 -19.40 -0.12 -0.31 16 3 C -0.17 -2.27 9.82 22.33 0.22 -2.05 16 4 C 0.12 1.57 11.17 84.69 0.95 2.52 16 5 N -0.51 -9.20 10.35 -194.75 -2.01 -11.22 16 6 C 0.14 2.49 8.98 85.04 0.76 3.26 16 7 C -0.20 -4.24 4.61 -19.99 -0.09 -4.33 16 8 C 0.57 14.25 6.20 86.78 0.54 14.79 16 9 O -0.57 -18.17 15.44 -3.88 -0.06 -18.23 16 10 N -0.60 -13.01 2.98 -823.15 -2.45 -15.46 16 11 C 0.11 1.98 5.54 86.22 0.48 2.46 16 12 C -0.13 -2.90 5.13 30.53 0.16 -2.74 16 13 C -0.07 -1.83 2.15 -10.77 -0.02 -1.85 16 14 C -0.11 -4.10 5.01 30.59 0.15 -3.95 16 15 C 0.15 5.79 5.47 86.38 0.47 6.27 16 16 N -0.62 -31.16 2.89 -726.92 -2.10 -33.26 16 17 C 0.17 8.66 9.05 127.77 1.16 9.82 16 18 C -0.26 -14.56 9.54 84.03 0.80 -13.76 16 19 H 0.06 3.43 7.83 -2.91 -0.02 3.41 16 20 C -0.05 -2.59 5.17 84.86 0.44 -2.15 16 21 N -0.94 -55.96 11.09 21.65 0.24 -55.72 16 22 Si 0.96 45.09 29.56 68.60 2.03 47.12 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 26 C -0.12 -2.99 5.36 30.67 0.16 -2.83 16 27 C 0.12 2.47 6.44 86.36 0.56 3.02 16 28 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.10 1.29 8.13 -2.39 -0.02 1.27 16 30 H 0.05 1.14 6.69 -2.39 -0.02 1.13 16 31 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.17 2.51 7.75 -2.91 -0.02 2.49 16 34 H 0.09 1.51 5.42 -2.38 -0.01 1.50 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.98 6.50 -2.39 -0.02 1.96 16 37 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 1.86 6.43 -2.39 -0.02 1.84 16 42 H 0.06 1.91 7.94 -2.39 -0.02 1.89 16 43 H -0.01 -0.35 7.74 -2.39 -0.02 -0.37 16 44 H 0.02 1.10 7.23 -2.39 -0.02 1.08 16 45 H 0.03 1.19 7.96 -2.39 -0.02 1.17 16 46 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 47 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.08 1.91 7.00 -2.38 -0.02 1.89 16 Total: -1.00 -72.53 392.88 3.84 -68.69 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.91 Total: 11.42 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 7.28 Total: 6.67 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -6.32 Total: -115.67 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.06 Total: -18.23 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -72.53 3.84 -68.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268199708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.817 kcal (2) G-P(sol) polarization free energy of solvation -72.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds