Wall clock time and date at job start Sat Apr 11 2020 02:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38354 * 119.46523 * 2 1 4 4 C 1.38357 * 119.30300 * 180.23207 * 3 2 1 5 5 C 1.50700 * 120.85265 * 179.77714 * 4 3 2 6 6 C 1.40024 * 118.28822 * 359.50185 * 4 3 2 7 7 C 1.47836 * 120.55863 * 180.27232 * 6 4 3 8 8 O 1.21558 * 120.00244 * 89.99952 * 7 6 4 9 9 N 1.34780 * 120.00234 * 270.00650 * 7 6 4 10 10 C 1.46495 * 120.00083 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47099 * 175.21908 * 10 9 7 12 12 N 1.46502 * 110.01661 * 303.72684 * 11 10 9 13 13 C 1.36941 * 119.99995 * 301.19305 * 12 11 10 14 14 H 1.08000 * 119.99697 * 354.58804 * 13 12 11 15 15 C 1.38811 * 120.00078 * 174.58733 * 13 12 11 16 16 N 1.31615 * 119.99833 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99796 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47319 * 89.99864 * 17 15 13 19 19 H 1.48504 * 109.46593 * 209.99460 * 17 15 13 20 20 H 1.48497 * 109.47213 * 329.99563 * 17 15 13 21 21 C 1.54270 * 110.03240 * 182.28550 * 11 10 9 22 22 C 1.54890 * 104.19483 * 217.10355 * 21 11 10 23 23 C 1.54886 * 102.75038 * 37.94017 * 22 21 11 24 24 C 1.53875 * 110.03389 * 65.11766 * 11 10 9 25 25 C 1.39515 * 118.88077 * 0.25419 * 6 4 3 26 26 C 1.50710 * 119.71362 * 179.97438 * 25 6 4 27 27 N 1.31691 * 120.57238 * 359.97438 * 25 6 4 28 28 H 1.09004 * 109.47394 * 270.27710 * 1 2 3 29 29 H 1.09005 * 109.46945 * 30.27120 * 1 2 3 30 30 H 1.08994 * 109.47678 * 150.27315 * 1 2 3 31 31 H 1.07996 * 120.34629 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.46958 * 269.71545 * 5 4 3 33 33 H 1.09002 * 109.47179 * 149.71928 * 5 4 3 34 34 H 1.09000 * 109.47236 * 29.71703 * 5 4 3 35 35 H 0.96999 * 119.99451 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.47240 * 295.21180 * 10 9 7 37 37 H 1.08996 * 109.47716 * 55.21313 * 10 9 7 38 38 H 0.96993 * 120.00406 * 121.19713 * 12 11 10 39 39 H 0.96997 * 119.99663 * 180.02562 * 16 15 13 40 40 H 1.08995 * 110.48795 * 335.77820 * 21 11 10 41 41 H 1.08995 * 110.48550 * 98.42892 * 21 11 10 42 42 H 1.09000 * 110.75623 * 279.62680 * 22 21 11 43 43 H 1.09006 * 110.75980 * 156.25718 * 22 21 11 44 44 H 1.08994 * 110.48855 * 203.37720 * 23 22 21 45 45 H 1.09007 * 110.48462 * 80.73442 * 23 22 21 46 46 H 1.09001 * 110.03401 * 238.56698 * 24 11 10 47 47 H 1.08993 * 110.03049 * 0.02562 * 24 11 10 48 48 H 1.08993 * 109.47033 * 89.99537 * 26 25 6 49 49 H 1.09006 * 109.46615 * 209.99908 * 26 25 6 50 50 H 1.08998 * 109.46602 * 329.99486 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2007 -0.0049 5 6 4.3475 2.4922 -0.0101 6 6 4.2312 -0.0342 0.0010 7 6 5.7082 -0.0969 0.0023 8 8 6.3148 -0.1180 1.0555 9 7 6.3823 -0.1306 -1.1644 10 6 7.8459 -0.1933 -1.1631 11 6 8.3513 -0.3411 -2.5996 12 7 7.7473 -1.5204 -3.2248 13 6 7.9284 -2.7586 -2.6686 14 1 8.5868 -2.8787 -1.8209 15 6 7.2658 -3.8593 -3.1942 16 7 6.4632 -3.7128 -4.2269 17 14 7.5124 -5.5482 -2.4350 18 1 6.5033 -5.7629 -1.3670 19 1 7.3541 -6.5894 -3.4820 20 1 8.8756 -5.6349 -1.8526 21 6 9.8889 -0.4660 -2.6087 22 6 10.3260 0.3158 -3.8723 23 6 9.3487 1.5174 -3.8859 24 6 8.0079 0.9200 -3.4117 25 6 3.4715 -1.2044 0.0062 26 6 4.1626 -2.5436 0.0120 27 7 2.1558 -1.1488 0.0059 28 1 -0.3634 0.0050 1.0277 29 1 -0.3633 0.8876 -0.5181 30 1 -0.3634 -0.8923 -0.5095 31 1 1.6444 2.1381 0.0004 32 1 4.5355 2.7990 -1.0390 33 1 5.2972 2.3473 0.5050 34 1 3.7717 3.2645 0.4999 35 1 5.8982 -0.1140 -2.0048 36 1 8.2484 0.7219 -0.7289 37 1 8.1725 -1.0496 -0.5731 38 1 7.2193 -1.4243 -4.0327 39 1 5.9999 -4.4819 -4.5940 40 1 10.3138 -0.0122 -1.7134 41 1 10.1862 -1.5118 -2.6854 42 1 10.2004 -0.2943 -4.7668 43 1 11.3569 0.6573 -3.7780 44 1 9.2520 1.9190 -4.8946 45 1 9.6864 2.2916 -3.1968 46 1 7.3926 0.6545 -4.2714 47 1 7.4816 1.6375 -2.7823 48 1 4.3293 -2.8620 1.0410 49 1 3.5382 -3.2768 -0.4986 50 1 5.1200 -2.4606 -0.5023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753666896.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:12 Heat of formation + Delta-G solvation = -13.148016 kcal Electronic energy + Delta-G solvation = -29818.350530 eV Core-core repulsion = 26037.615802 eV Total energy + Delta-G solvation = -3780.734729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.69327 -39.12052 -37.99677 -34.18674 -34.09012 -33.62906 -33.26900 -30.66489 -29.13070 -28.31657 -28.14962 -27.71019 -26.94891 -24.48675 -23.27693 -22.17403 -21.08680 -20.49149 -19.76016 -18.69773 -17.40089 -17.01038 -16.89229 -15.80618 -15.44651 -15.00590 -14.75018 -14.61040 -14.32903 -14.12236 -13.94729 -13.39186 -13.34377 -13.25808 -13.09182 -12.96145 -12.82349 -12.64320 -12.61232 -12.24227 -11.91771 -11.76911 -11.65013 -11.61700 -11.47133 -11.14113 -10.80219 -10.76056 -10.66669 -10.53504 -10.26842 -10.17137 -9.88634 -9.86885 -9.66666 -9.43813 -9.23190 -8.92770 -8.67660 -8.48565 -7.02970 -5.82045 -3.11274 0.99255 1.25702 2.93907 3.41023 3.47817 3.48582 3.55252 3.77589 4.25235 4.54303 4.55206 4.63104 4.97601 5.06572 5.08244 5.13821 5.20646 5.27736 5.40817 5.42522 5.45006 5.49904 5.54369 5.62805 5.65832 5.72846 5.74157 5.88730 5.90911 5.91628 5.95355 5.96507 6.05876 6.13910 6.19573 6.23358 6.27800 6.28406 6.40409 6.43230 6.52819 6.57115 6.74131 6.75660 6.79269 6.95720 7.05287 7.69318 7.98033 8.06341 8.36121 8.61420 9.48204 10.01803 10.37197 11.39751 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.004785 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.512853 B = 5850.762705 C = 7677.782994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.143 3.857 3 C -0.189 4.189 4 C -0.005 4.005 5 C -0.121 4.121 6 C -0.181 4.181 7 C 0.568 3.432 8 O -0.546 6.546 9 N -0.689 5.689 10 C 0.118 3.882 11 C 0.190 3.810 12 N -0.710 5.710 13 C -0.234 4.234 14 H 0.069 0.931 15 C -0.005 4.005 16 N -0.929 5.929 17 Si 0.897 3.103 18 H -0.288 1.288 19 H -0.293 1.293 20 H -0.282 1.282 21 C -0.131 4.131 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.126 4.126 25 C 0.184 3.816 26 C -0.114 4.114 27 N -0.489 5.489 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.403 0.597 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 13.515 4.292 15.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.005 3.995 3 C -0.209 4.209 4 C -0.013 4.013 5 C -0.178 4.178 6 C -0.186 4.186 7 C 0.352 3.648 8 O -0.425 6.425 9 N -0.338 5.338 10 C -0.008 4.008 11 C 0.097 3.903 12 N -0.352 5.352 13 C -0.365 4.365 14 H 0.087 0.913 15 C -0.202 4.202 16 N -0.577 5.577 17 Si 0.728 3.272 18 H -0.216 1.216 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.172 4.172 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.164 4.164 25 C 0.046 3.954 26 C -0.171 4.171 27 N -0.200 5.200 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.154 0.846 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.238 0.762 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.098 0.902 49 H 0.101 0.899 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.406 12.561 5.108 14.597 hybrid contribution 0.109 -0.308 -0.259 0.417 sum -5.297 12.252 4.849 14.202 Atomic orbital electron populations 1.20724 0.88797 1.03536 1.03004 1.21377 0.96990 0.88208 0.92936 1.21663 0.93647 0.99273 1.06287 1.20270 0.93748 0.94379 0.92903 1.20891 1.00306 0.93376 1.03207 1.20730 0.94993 0.94418 1.08484 1.17896 0.85991 0.76493 0.84393 1.90762 1.69370 1.50966 1.31411 1.45779 1.07980 1.72078 1.07931 1.21952 0.78839 1.00417 0.99581 1.20449 0.92165 0.87776 0.89880 1.42545 1.61092 1.01298 1.30234 1.19065 1.21434 0.84810 1.11230 0.91280 1.24655 0.99389 0.97713 0.98401 1.69641 1.32861 1.29700 1.25466 0.86351 0.77788 0.84793 0.78278 1.21575 1.21902 1.20800 1.22821 0.96664 1.01329 0.96350 1.22383 0.97472 0.96380 0.99203 1.22299 0.95690 0.97633 1.00180 1.22432 0.97421 0.96707 0.99833 1.21389 0.88639 0.94940 0.90419 1.20880 1.01113 0.91807 1.03309 1.67397 1.09052 1.28993 1.14579 0.90398 0.90705 0.90302 0.84632 0.90053 0.90631 0.90677 0.76152 0.93027 0.91257 0.78129 0.93556 0.92936 0.90232 0.91400 0.92739 0.92390 0.92309 0.91314 0.92154 0.90187 0.89901 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.16 36.00 0.37 -0.61 16 2 C 0.14 1.93 6.78 -82.51 -0.56 1.37 16 3 C -0.19 -2.31 9.43 -39.49 -0.37 -2.69 16 4 C 0.00 -0.07 5.95 -103.91 -0.62 -0.69 16 5 C -0.12 -1.35 9.69 36.01 0.35 -1.00 16 6 C -0.18 -3.06 5.65 -104.83 -0.59 -3.65 16 7 C 0.57 10.43 4.35 -12.33 -0.05 10.38 16 8 O -0.55 -11.63 17.10 5.31 0.09 -11.54 16 9 N -0.69 -12.05 5.09 -61.26 -0.31 -12.36 16 10 C 0.12 2.10 4.00 -4.05 -0.02 2.08 16 11 C 0.19 3.30 0.68 -130.70 -0.09 3.21 16 12 N -0.71 -15.43 4.76 -46.19 -0.22 -15.65 16 13 C -0.23 -5.86 8.39 -15.06 -0.13 -5.99 16 14 H 0.07 1.75 7.22 -52.49 -0.38 1.37 16 15 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 16 N -0.93 -26.14 13.06 55.49 0.72 -25.42 16 17 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.13 -2.19 5.94 -25.07 -0.15 -2.33 16 22 C -0.12 -1.69 6.91 -24.74 -0.17 -1.86 16 23 C -0.12 -1.57 6.83 -25.07 -0.17 -1.74 16 24 C -0.13 -1.85 5.80 -25.61 -0.15 -1.99 16 25 C 0.18 3.25 6.82 -82.17 -0.56 2.69 16 26 C -0.11 -2.06 9.79 36.01 0.35 -1.70 16 27 N -0.49 -8.11 10.17 -5.42 -0.06 -8.16 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.53 8.08 -51.93 -0.42 0.12 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.96 7.19 -51.93 -0.37 0.59 16 34 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.40 7.02 7.98 -40.82 -0.33 6.69 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.42 7.50 -51.93 -0.39 1.03 16 38 H 0.38 9.05 7.28 -40.82 -0.30 8.75 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 41 H 0.08 1.53 7.10 -51.93 -0.37 1.16 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 46 H 0.07 1.06 7.44 -51.93 -0.39 0.68 16 47 H 0.06 0.81 7.54 -51.93 -0.39 0.42 16 48 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 50 H 0.09 1.85 7.07 -51.93 -0.37 1.48 16 LS Contribution 401.86 15.07 6.06 6.06 Total: -1.00 -29.96 401.86 -9.71 -39.67 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -8.31 Total: 15.46 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.66 Total: -4.76 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.14 Total: -61.59 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.96 -9.71 -39.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753666896.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.519 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds