Wall clock time and date at job start Sat Apr 11 2020 02:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.47320 * 2 1 4 4 C 1.38603 * 119.54862 * 124.99371 * 3 2 1 5 5 C 1.38588 * 119.34867 * 179.97438 * 4 3 2 6 6 C 1.38629 * 118.48900 * 0.02562 * 5 4 3 7 7 C 1.39272 * 119.06178 * 0.02562 * 6 5 4 8 8 C 1.48167 * 119.72375 * 179.97438 * 7 6 5 9 9 O 1.21513 * 119.99801 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99845 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99533 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46881 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.45035 * 295.05850 * 12 11 10 14 14 C 1.54853 * 109.42894 * 175.11684 * 12 11 10 15 15 C 1.47099 * 110.32498 * 168.70349 * 14 12 11 16 16 C 1.52568 * 114.32012 * 62.80356 * 15 14 12 17 17 C 1.50875 * 109.36237 * 274.98857 * 16 15 14 18 18 C 1.54301 * 110.23650 * 91.79616 * 17 16 15 19 19 N 1.44586 * 109.45109 * 54.99744 * 12 11 10 20 20 C 1.36937 * 118.63844 * 30.72264 * 19 12 11 21 21 H 1.08003 * 120.00607 * 29.16128 * 20 19 12 22 22 C 1.38818 * 119.99839 * 209.16477 * 20 19 12 23 23 N 1.31622 * 119.99509 * 25.30783 * 22 20 19 24 24 Si 1.86793 * 120.00125 * 205.30475 * 22 20 19 25 25 H 1.48498 * 109.47121 * 179.97438 * 24 22 20 26 26 H 1.48502 * 109.46825 * 60.00284 * 24 22 20 27 27 H 1.48496 * 109.47432 * 300.00363 * 24 22 20 28 28 N 1.31495 * 119.54852 * 305.25197 * 3 2 1 29 29 H 1.08999 * 109.46802 * 299.99979 * 1 2 3 30 30 H 1.08996 * 109.46796 * 59.99829 * 1 2 3 31 31 H 1.08997 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47691 * 239.99978 * 2 1 3 33 33 H 1.09006 * 109.47434 * 119.99754 * 2 1 3 34 34 H 1.07999 * 120.33038 * 359.96678 * 4 3 2 35 35 H 1.07997 * 120.75624 * 179.97438 * 5 4 3 36 36 H 1.08002 * 120.47288 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00125 * 0.02562 * 10 8 7 38 38 H 1.08996 * 109.47177 * 59.99871 * 11 10 8 39 39 H 1.09002 * 109.47137 * 299.99657 * 11 10 8 40 40 H 1.09000 * 109.33108 * 288.96735 * 14 12 11 41 41 H 1.09000 * 109.33186 * 48.61879 * 14 12 11 42 42 H 1.08998 * 108.51524 * 184.05469 * 15 14 12 43 43 H 1.08994 * 108.51382 * 301.70783 * 15 14 12 44 44 H 1.09001 * 109.49105 * 34.95637 * 16 15 14 45 45 H 1.09001 * 109.49019 * 155.02166 * 16 15 14 46 46 H 1.09002 * 109.37343 * 212.08223 * 17 16 15 47 47 H 1.09004 * 109.36742 * 331.69442 * 17 16 15 48 48 H 1.08999 * 109.14161 * 199.01305 * 18 17 16 49 49 H 1.09009 * 108.95357 * 80.27071 * 18 17 16 50 50 H 0.97003 * 120.00293 * 5.98249 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9122 1.8348 0.9878 5 6 3.3720 3.1421 0.9835 6 6 2.9310 3.9949 -0.0165 7 6 2.0456 3.5110 -0.9765 8 6 1.5644 4.4099 -2.0516 9 8 1.9420 5.5642 -2.0928 10 7 0.7080 3.9473 -2.9838 11 6 0.2318 4.8364 -4.0464 12 6 -0.7213 4.0686 -4.9647 13 1 -0.1740 3.2756 -5.4744 14 6 -1.3193 5.0386 -6.0132 15 6 -2.0208 4.2856 -7.0643 16 6 -3.2182 3.4809 -6.5681 17 6 -2.7443 2.1430 -6.0563 18 6 -2.4515 2.2235 -4.5435 19 7 -1.7863 3.4890 -4.1771 20 6 -2.1906 4.1383 -3.0413 21 1 -2.1031 5.2126 -2.9731 22 6 -2.7130 3.4156 -1.9774 23 7 -2.3856 2.1509 -1.8172 24 14 -3.8802 4.2381 -0.7731 25 1 -4.2932 3.2583 0.2635 26 1 -5.0804 4.7239 -1.5005 27 1 -3.1957 5.3858 -0.1255 28 7 1.6261 2.2523 -0.9342 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.2362 1.1454 1.7534 35 1 4.0576 3.4889 1.7424 36 1 3.2685 5.0203 -0.0502 37 1 0.4063 3.0260 -2.9507 38 1 1.0814 5.1979 -4.6257 39 1 -0.2929 5.6831 -3.6039 40 1 -2.0216 5.7123 -5.5223 41 1 -0.5165 5.6212 -6.4651 42 1 -2.3665 4.9890 -7.8219 43 1 -1.3133 3.5987 -7.5286 44 1 -3.7127 4.0239 -5.7627 45 1 -3.9194 3.3288 -7.3886 46 1 -3.5151 1.3935 -6.2360 47 1 -1.8343 1.8561 -6.5833 48 1 -1.8087 1.3904 -4.2591 49 1 -3.3911 2.1462 -3.9964 50 1 -1.7140 1.7475 -2.3892 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968893966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:07 Heat of formation + Delta-G solvation = 5.017051 kcal Electronic energy + Delta-G solvation = -30348.120478 eV Core-core repulsion = 26568.173445 eV Total energy + Delta-G solvation = -3779.947032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.33658 -38.84968 -37.92639 -34.58053 -33.90040 -33.67615 -32.53082 -31.51300 -30.50551 -29.65581 -27.01546 -25.75923 -24.52274 -23.89384 -23.19574 -22.15787 -21.06220 -20.14433 -19.65997 -19.12629 -17.76392 -16.66958 -16.25862 -15.68767 -15.54361 -14.96563 -14.79099 -14.68350 -14.32404 -13.99546 -13.79617 -13.59216 -13.47230 -13.43702 -12.97516 -12.84745 -12.66176 -12.13570 -12.06300 -11.99454 -11.79965 -11.63821 -11.30970 -11.08182 -10.94553 -10.70344 -10.69017 -10.22150 -10.17377 -10.05256 -10.04149 -9.90102 -9.81330 -9.73409 -9.62714 -9.15924 -9.07434 -8.80133 -8.27273 -8.14130 -6.82264 -5.95734 -3.17921 0.93438 1.41070 3.21900 3.53589 3.55100 3.71493 3.75740 4.22330 4.38312 4.62534 4.75120 5.06498 5.10595 5.11919 5.24324 5.33406 5.41448 5.47839 5.50885 5.60862 5.63197 5.67276 5.70160 5.82573 5.92686 6.00374 6.01653 6.05926 6.15705 6.20854 6.28674 6.30167 6.31594 6.48879 6.49036 6.56622 6.58094 6.60735 6.70735 6.74570 6.78111 6.90948 7.02808 7.06098 7.11383 7.21760 7.25660 8.01469 8.13746 8.37851 8.67779 8.87853 9.22156 9.91101 10.28101 11.28712 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.004793 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.097311 B = 5840.969829 C = 6514.958015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C 0.133 3.867 4 C -0.160 4.160 5 C -0.084 4.084 6 C -0.128 4.128 7 C 0.097 3.903 8 C 0.563 3.437 9 O -0.559 6.559 10 N -0.665 5.665 11 C 0.129 3.871 12 C 0.175 3.825 13 H 0.041 0.959 14 C -0.134 4.134 15 C -0.101 4.101 16 C -0.106 4.106 17 C -0.136 4.136 18 C 0.159 3.841 19 N -0.586 5.586 20 C -0.352 4.352 21 H 0.051 0.949 22 C -0.008 4.008 23 N -0.902 5.902 24 Si 1.049 2.951 25 H -0.288 1.288 26 H -0.296 1.296 27 H -0.297 1.297 28 N -0.438 5.438 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.417 0.583 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.041 0.959 43 H 0.045 0.955 44 H 0.075 0.925 45 H 0.041 0.959 46 H 0.050 0.950 47 H 0.045 0.955 48 H 0.017 0.983 49 H 0.068 0.932 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.049 -3.346 -0.220 8.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.007 4.007 4 C -0.180 4.180 5 C -0.110 4.110 6 C -0.149 4.149 7 C -0.042 4.042 8 C 0.347 3.653 9 O -0.439 6.439 10 N -0.313 5.313 11 C 0.004 3.996 12 C 0.066 3.934 13 H 0.059 0.941 14 C -0.175 4.175 15 C -0.138 4.138 16 C -0.144 4.144 17 C -0.175 4.175 18 C 0.034 3.966 19 N -0.309 5.309 20 C -0.481 4.481 21 H 0.068 0.932 22 C -0.212 4.212 23 N -0.541 5.541 24 Si 0.880 3.120 25 H -0.214 1.214 26 H -0.224 1.224 27 H -0.224 1.224 28 N -0.150 5.150 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.255 0.745 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.035 0.965 49 H 0.087 0.913 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.718 -3.098 0.386 7.408 hybrid contribution 1.300 0.332 -0.519 1.438 sum 8.018 -2.766 -0.133 8.483 Atomic orbital electron populations 1.21688 0.92375 1.01438 1.04641 1.20517 0.98245 0.89740 1.02297 1.21361 0.92714 0.96331 0.90338 1.22139 0.99008 0.96914 0.99920 1.21512 0.98512 0.93311 0.97627 1.22062 0.97065 1.01521 0.94206 1.21292 0.95577 0.91230 0.96101 1.17806 0.79901 0.86185 0.81408 1.90704 1.60111 1.17585 1.75514 1.45526 1.42907 1.16422 1.26434 1.21525 0.95828 0.93883 0.88325 1.20487 0.88470 0.93374 0.91023 0.94100 1.21340 0.99615 0.99132 0.97441 1.20289 0.97335 0.98509 0.97680 1.20933 0.96972 0.96614 0.99878 1.21991 0.99522 0.96703 0.99312 1.21258 0.97143 0.87346 0.90860 1.43723 1.36553 1.25103 1.25542 1.19717 1.43701 0.91530 0.93111 0.93157 1.25476 1.01855 0.97068 0.96832 1.70785 1.31411 1.13723 1.38213 0.83745 0.76764 0.75036 0.76405 1.21375 1.22366 1.22414 1.67424 1.20934 1.02609 1.24005 0.93161 0.89302 0.93046 0.90348 0.91011 0.84802 0.84558 0.83861 0.74508 0.93119 0.91049 0.91689 0.93333 0.93991 0.93594 0.90606 0.94022 0.93083 0.93600 0.96550 0.91314 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.77 37.16 0.36 -1.95 16 2 C -0.07 -0.93 6.33 -27.88 -0.18 -1.11 16 3 C 0.13 2.05 6.18 -82.60 -0.51 1.54 16 4 C -0.16 -2.03 9.72 -39.32 -0.38 -2.41 16 5 C -0.08 -1.06 10.17 -39.31 -0.40 -1.46 16 6 C -0.13 -2.02 9.63 -39.05 -0.38 -2.40 16 7 C 0.10 1.84 6.75 -83.01 -0.56 1.28 16 8 C 0.56 11.96 7.81 -12.18 -0.10 11.86 16 9 O -0.56 -12.76 16.32 5.35 0.09 -12.67 16 10 N -0.66 -13.98 4.71 -61.14 -0.29 -14.26 16 11 C 0.13 2.58 4.52 -4.04 -0.02 2.57 16 12 C 0.18 3.37 2.19 -67.98 -0.15 3.22 16 13 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 14 C -0.13 -2.31 5.06 -28.59 -0.14 -2.45 16 15 C -0.10 -1.59 5.16 -29.78 -0.15 -1.74 16 16 C -0.11 -1.79 5.51 -28.02 -0.15 -1.95 16 17 C -0.14 -2.38 5.71 -27.12 -0.15 -2.54 16 18 C 0.16 3.37 4.56 -2.76 -0.01 3.36 16 19 N -0.59 -12.76 1.61 -164.25 -0.26 -13.02 16 20 C -0.35 -8.78 7.48 -15.06 -0.11 -8.89 16 21 H 0.05 1.35 6.85 -52.48 -0.36 0.99 16 22 C -0.01 -0.21 4.57 -17.43 -0.08 -0.29 16 23 N -0.90 -23.85 12.60 55.49 0.70 -23.15 16 24 Si 1.05 24.96 29.99 -169.99 -5.10 19.86 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.30 -7.12 7.11 56.52 0.40 -6.71 16 28 N -0.44 -8.12 9.05 -6.06 -0.05 -8.18 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.76 7.81 -51.93 -0.41 1.36 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 34 H 0.13 1.25 7.95 -52.49 -0.42 0.83 16 35 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.14 2.15 7.64 -52.49 -0.40 1.75 16 37 H 0.42 9.17 7.41 -40.82 -0.30 8.87 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.59 6.86 -51.93 -0.36 1.23 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.69 7.35 -51.93 -0.38 0.31 16 44 H 0.08 1.49 7.49 -51.93 -0.39 1.10 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.05 0.76 7.31 -51.93 -0.38 0.38 16 48 H 0.02 0.37 7.15 -51.93 -0.37 0.00 16 49 H 0.07 1.65 6.78 -51.92 -0.35 1.30 16 50 H 0.27 7.10 6.26 -40.82 -0.26 6.85 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -28.13 390.81 -10.37 -38.50 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -8.22 Total: 10.38 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.12 Total: -3.36 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.09 Total: -58.61 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.10 Total: 19.86 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.13 -10.37 -38.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968893966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.514 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds