Wall clock time and date at job start Sat Apr 11 2020 02:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47393 * 2 1 4 4 C 1.38598 * 119.55070 * 124.99755 * 3 2 1 5 5 C 1.38585 * 119.35012 * 180.02562 * 4 3 2 6 6 C 1.38626 * 118.48887 * 359.97438 * 5 4 3 7 7 C 1.39266 * 119.06438 * 0.02562 * 6 5 4 8 8 C 1.48165 * 119.72641 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99647 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00354 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00321 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47418 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.44791 * 64.99543 * 12 11 10 14 14 C 1.54865 * 109.45049 * 184.94791 * 12 11 10 15 15 C 1.47106 * 110.31384 * 191.31454 * 14 12 11 16 16 C 1.52557 * 114.31086 * 297.15167 * 15 14 12 17 17 C 1.50882 * 109.34920 * 85.04133 * 16 15 14 18 18 C 1.53948 * 110.09121 * 268.11283 * 17 16 15 19 19 N 1.44580 * 109.44582 * 305.05072 * 12 11 10 20 20 C 1.36937 * 118.64587 * 329.26846 * 19 12 11 21 21 H 1.08001 * 119.99504 * 331.67435 * 20 19 12 22 22 C 1.38809 * 120.00558 * 151.67233 * 20 19 12 23 23 N 1.31622 * 119.99791 * 344.49210 * 22 20 19 24 24 Si 1.86803 * 120.00446 * 164.48983 * 22 20 19 25 25 H 1.48500 * 109.46830 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46913 * 120.00254 * 24 22 20 27 27 H 1.48502 * 109.47182 * 240.00213 * 24 22 20 28 28 N 1.31502 * 119.54841 * 305.00517 * 3 2 1 29 29 H 1.09001 * 109.47146 * 59.99256 * 1 2 3 30 30 H 1.08999 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46810 * 300.00062 * 1 2 3 32 32 H 1.09000 * 109.46810 * 239.99938 * 2 1 3 33 33 H 1.09001 * 109.47526 * 120.00359 * 2 1 3 34 34 H 1.08001 * 120.32573 * 0.03111 * 4 3 2 35 35 H 1.08006 * 120.75077 * 180.26063 * 5 4 3 36 36 H 1.08001 * 120.46775 * 180.02562 * 6 5 4 37 37 H 0.97003 * 119.99654 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.47115 * 300.00062 * 11 10 8 39 39 H 1.09006 * 109.46937 * 60.00008 * 11 10 8 40 40 H 1.08997 * 109.33029 * 311.55316 * 14 12 11 41 41 H 1.09004 * 109.32748 * 71.02772 * 14 12 11 42 42 H 1.09001 * 108.50748 * 175.90453 * 15 14 12 43 43 H 1.08998 * 108.40853 * 58.32164 * 15 14 12 44 44 H 1.08999 * 109.49324 * 325.07939 * 16 15 14 45 45 H 1.08998 * 109.51604 * 205.01483 * 16 15 14 46 46 H 1.09000 * 109.36857 * 147.92536 * 17 16 15 47 47 H 1.09000 * 109.26471 * 28.23727 * 17 16 15 48 48 H 1.09003 * 108.94283 * 279.87219 * 18 17 16 49 49 H 1.09000 * 108.87790 * 161.20198 * 18 17 16 50 50 H 0.96994 * 120.00168 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9123 1.8347 0.9877 5 6 3.3712 3.1424 0.9840 6 6 2.9302 3.9951 -0.0160 7 6 2.0457 3.5110 -0.9766 8 6 1.5644 4.4099 -2.0516 9 8 1.9413 5.5644 -2.0922 10 7 0.7088 3.9471 -2.9844 11 6 0.2326 4.8361 -4.0470 12 6 -0.7205 4.0684 -4.9653 13 1 -1.6118 3.7833 -4.4065 14 6 -1.1257 4.9698 -6.1576 15 6 -2.2391 4.3618 -6.9023 16 6 -1.9068 3.0173 -7.5421 17 6 -2.1081 1.9180 -6.5284 18 6 -0.7908 1.6388 -5.7824 19 7 -0.0609 2.8801 -5.4585 20 6 1.2972 2.9073 -5.6319 21 1 1.7946 3.8398 -5.8539 22 6 2.0345 1.7363 -5.5223 23 7 1.5001 0.6722 -4.9615 24 14 3.7852 1.6706 -6.1707 25 1 4.1481 2.9888 -6.7502 26 1 4.7134 1.3472 -5.0576 27 1 3.8858 0.6237 -7.2191 28 7 1.6299 2.2510 -0.9370 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.2371 1.1449 1.7526 35 1 4.0605 3.4878 1.7404 36 1 3.2678 5.0205 -0.0496 37 1 0.4083 3.0254 -2.9521 38 1 -0.2929 5.6824 -3.6044 39 1 1.0823 5.1983 -4.6257 40 1 -1.4329 5.9464 -5.7835 41 1 -0.2711 5.0937 -6.8229 42 1 -2.5480 5.0519 -7.6875 43 1 -3.0755 4.2219 -6.2175 44 1 -0.8689 3.0195 -7.8749 45 1 -2.5623 2.8487 -8.3964 46 1 -2.4339 1.0113 -7.0383 47 1 -2.8710 2.2241 -5.8126 48 1 -0.1574 1.0083 -6.4065 49 1 -1.0152 1.1084 -4.8569 50 1 2.0151 -0.1462 -4.8852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968893967.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:10 Heat of formation + Delta-G solvation = -7.823023 kcal Electronic energy + Delta-G solvation = -30170.045412 eV Core-core repulsion = 26389.541592 eV Total energy + Delta-G solvation = -3780.503820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.60307 -40.30097 -39.39856 -36.04869 -35.22488 -35.07059 -33.77482 -32.88801 -32.43681 -30.90503 -28.72403 -27.39514 -25.79036 -25.22390 -25.07237 -23.48232 -22.22632 -21.61450 -21.05493 -20.78179 -19.08202 -17.95136 -17.48770 -17.25038 -16.80937 -16.46666 -16.37536 -16.01794 -15.89906 -15.53377 -15.26464 -15.20215 -14.84071 -14.61148 -14.44833 -14.29020 -13.94602 -13.69854 -13.39355 -13.21565 -13.13328 -12.91585 -12.85131 -12.84182 -12.72443 -12.37424 -12.33056 -12.01227 -11.94633 -11.54628 -11.40234 -11.33865 -11.27566 -11.19310 -10.93688 -10.85872 -10.35406 -10.31218 -10.05745 -9.73438 -8.50855 -7.76603 -5.18986 -0.28218 0.31315 1.35443 1.41585 1.46860 1.80194 2.33475 2.52579 2.92485 3.16618 3.38070 3.61002 3.70820 3.90688 4.04637 4.08168 4.08934 4.13142 4.27774 4.39478 4.42364 4.46484 4.50034 4.51782 4.58917 4.61151 4.66358 4.78842 4.89243 5.01440 5.06198 5.06872 5.09388 5.13682 5.14744 5.26203 5.27003 5.27536 5.38915 5.43210 5.46147 5.56247 5.63256 5.68903 5.71124 5.77228 5.80968 5.91511 6.49210 6.62865 6.98467 7.28942 7.30274 8.02976 8.42034 9.26545 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.004596 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.918490 B = 6090.447872 C = 6394.183292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C 0.110 3.890 4 C -0.141 4.141 5 C -0.073 4.073 6 C -0.133 4.133 7 C 0.058 3.942 8 C 0.554 3.446 9 O -0.587 6.587 10 N -0.669 5.669 11 C 0.128 3.872 12 C 0.173 3.827 13 H 0.052 0.948 14 C -0.126 4.126 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.132 4.132 18 C 0.192 3.808 19 N -0.585 5.585 20 C -0.236 4.236 21 H 0.045 0.955 22 C -0.022 4.022 23 N -0.905 5.905 24 Si 0.925 3.075 25 H -0.281 1.281 26 H -0.306 1.306 27 H -0.290 1.290 28 N -0.469 5.469 29 H 0.034 0.966 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.181 0.819 35 H 0.182 0.818 36 H 0.145 0.855 37 H 0.416 0.584 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.038 0.962 49 H -0.002 1.002 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 0.560 10.542 11.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 C -0.031 4.031 4 C -0.160 4.160 5 C -0.099 4.099 6 C -0.154 4.154 7 C -0.080 4.080 8 C 0.340 3.660 9 O -0.469 6.469 10 N -0.316 5.316 11 C 0.004 3.996 12 C 0.065 3.935 13 H 0.070 0.930 14 C -0.167 4.167 15 C -0.137 4.137 16 C -0.140 4.140 17 C -0.171 4.171 18 C 0.068 3.932 19 N -0.308 5.308 20 C -0.366 4.366 21 H 0.063 0.937 22 C -0.220 4.220 23 N -0.550 5.550 24 Si 0.757 3.243 25 H -0.206 1.206 26 H -0.234 1.234 27 H -0.217 1.217 28 N -0.181 5.181 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.198 0.802 35 H 0.200 0.800 36 H 0.163 0.837 37 H 0.253 0.747 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.056 0.944 49 H 0.016 0.984 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.359 0.934 9.825 10.789 hybrid contribution 1.849 -0.309 -0.209 1.887 sum -2.510 0.624 9.616 9.957 Atomic orbital electron populations 1.21579 0.94301 1.02239 1.01280 1.20556 0.97027 0.89168 1.03874 1.21879 0.94245 0.96740 0.90261 1.22638 0.96383 0.97497 0.99499 1.22014 0.97887 0.92732 0.97244 1.22249 0.96339 1.02420 0.94365 1.21112 0.98802 0.91453 0.96632 1.18322 0.79137 0.86357 0.82224 1.90654 1.60084 1.18945 1.77262 1.45672 1.44187 1.16203 1.25552 1.21586 0.97557 0.92245 0.88234 1.20678 0.93240 0.87311 0.92254 0.92970 1.21274 0.98660 0.98737 0.98009 1.20272 0.97795 0.96413 0.99250 1.20902 1.00727 0.94834 0.97575 1.21940 0.98035 0.98829 0.98270 1.20736 0.90460 0.86673 0.95376 1.43715 1.02850 1.09637 1.74558 1.18907 0.84028 0.93347 1.40367 0.93702 1.25247 0.98577 0.97793 1.00335 1.70137 1.36615 1.02372 1.45916 0.85858 0.83893 0.77093 0.77457 1.20644 1.23389 1.21652 1.67347 1.24294 1.02536 1.23953 0.94679 0.90871 0.92328 0.91687 0.86668 0.80201 0.80023 0.83721 0.74722 0.91290 0.93697 0.90833 0.93838 0.91764 0.92128 0.93877 0.91722 0.92023 0.92378 0.94378 0.98353 0.94745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.77 71.98 0.70 -2.77 16 2 C -0.07 -1.71 6.33 29.85 0.19 -1.52 16 3 C 0.11 3.25 6.18 42.69 0.26 3.51 16 4 C -0.14 -3.04 9.72 22.44 0.22 -2.82 16 5 C -0.07 -1.61 10.17 22.45 0.23 -1.38 16 6 C -0.13 -4.10 9.63 22.61 0.22 -3.88 16 7 C 0.06 2.24 6.75 41.89 0.28 2.52 16 8 C 0.55 24.53 7.81 86.88 0.68 25.21 16 9 O -0.59 -27.67 16.32 -3.76 -0.06 -27.74 16 10 N -0.67 -29.54 4.71 -465.66 -2.19 -31.73 16 11 C 0.13 5.25 4.52 86.38 0.39 5.64 16 12 C 0.17 6.68 2.19 45.99 0.10 6.78 16 13 H 0.05 1.95 8.06 -2.39 -0.02 1.93 16 14 C -0.13 -4.14 5.06 29.40 0.15 -3.99 16 15 C -0.10 -2.88 5.16 28.61 0.15 -2.74 16 16 C -0.10 -3.32 5.51 29.76 0.16 -3.16 16 17 C -0.13 -4.58 5.71 30.23 0.17 -4.40 16 18 C 0.19 8.64 4.66 86.49 0.40 9.05 16 19 N -0.59 -26.56 1.77 -674.25 -1.19 -27.76 16 20 C -0.24 -12.27 7.62 84.03 0.64 -11.63 16 21 H 0.05 2.48 6.75 -2.91 -0.02 2.46 16 22 C -0.02 -1.21 4.86 84.86 0.41 -0.80 16 23 N -0.90 -50.30 11.14 21.65 0.24 -50.06 16 24 Si 0.93 46.21 29.58 68.60 2.03 48.23 16 25 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 26 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 27 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 28 N -0.47 -17.93 9.05 -173.09 -1.57 -19.50 16 29 H 0.03 1.14 7.94 -2.39 -0.02 1.12 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.12 1.85 7.87 -2.39 -0.02 1.84 16 34 H 0.18 2.21 7.95 -2.91 -0.02 2.18 16 35 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.14 4.31 7.64 -2.91 -0.02 4.28 16 37 H 0.42 19.66 7.41 -92.71 -0.69 18.97 16 38 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 39 H 0.04 2.05 6.84 -2.38 -0.02 2.03 16 40 H 0.07 2.06 8.11 -2.39 -0.02 2.04 16 41 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.62 7.35 -2.39 -0.02 1.60 16 44 H 0.04 1.67 7.48 -2.39 -0.02 1.65 16 45 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.06 1.86 7.31 -2.39 -0.02 1.84 16 48 H 0.04 1.96 6.47 -2.39 -0.02 1.94 16 49 H 0.00 -0.08 8.02 -2.39 -0.02 -0.10 16 50 H 0.24 13.48 8.31 -92.71 -0.77 12.71 16 Total: -1.00 -66.72 392.23 2.86 -63.86 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.24 Total: 31.06 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 5.36 Total: 13.63 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -4.71 Total: -129.04 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.06 Total: -27.74 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -66.72 2.86 -63.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968893967.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.040 kcal (2) G-P(sol) polarization free energy of solvation -66.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds