Wall clock time and date at job start Sat Apr 11 2020 03:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47116 * 2 1 4 4 C 1.50702 * 109.46941 * 119.99368 * 2 1 3 5 5 N 1.34657 * 125.80608 * 300.03079 * 4 2 1 6 6 H 0.97004 * 124.84939 * 359.97174 * 5 4 2 7 7 C 1.36441 * 110.29972 * 179.71551 * 5 4 2 8 8 C 1.34491 * 108.85923 * 0.26075 * 7 5 4 9 9 C 1.36780 * 125.79859 * 120.20056 * 4 2 1 10 10 C 1.47258 * 126.94089 * 0.04816 * 9 4 2 11 11 O 1.21622 * 120.00128 * 40.52013 * 10 9 4 12 12 N 1.34773 * 119.99802 * 220.52080 * 10 9 4 13 13 C 1.47152 * 121.01479 * 5.43486 * 12 10 9 14 14 C 1.53052 * 107.68212 * 122.56189 * 13 12 10 15 15 C 1.51139 * 111.11347 * 54.40431 * 14 13 12 16 16 H 1.08999 * 108.45566 * 184.63681 * 15 14 13 17 17 C 1.53993 * 113.17235 * 304.88290 * 15 14 13 18 18 H 1.08994 * 112.71517 * 284.03304 * 17 15 14 19 19 C 1.55508 * 100.61531 * 164.15674 * 17 15 14 20 20 C 1.54500 * 102.20003 * 322.23516 * 19 17 15 21 21 N 1.46465 * 113.23208 * 64.34896 * 15 14 13 22 22 C 1.36943 * 126.05680 * 29.52593 * 21 15 14 23 23 H 1.08001 * 119.99581 * 359.97438 * 22 21 15 24 24 C 1.38808 * 119.99972 * 179.97438 * 22 21 15 25 25 N 1.31619 * 120.00313 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99939 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47081 * 89.99790 * 26 24 22 28 28 H 1.48495 * 109.47220 * 209.99997 * 26 24 22 29 29 H 1.48502 * 109.46891 * 330.00082 * 26 24 22 30 30 C 1.46528 * 121.01706 * 185.16253 * 12 10 9 31 31 H 1.09002 * 109.47518 * 300.00417 * 1 2 3 32 32 H 1.09003 * 109.46849 * 60.00034 * 1 2 3 33 33 H 1.08994 * 109.47054 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47595 * 239.99922 * 2 1 3 35 35 H 1.08995 * 109.47143 * 180.02562 * 3 2 1 36 36 H 1.08994 * 109.46654 * 299.99779 * 3 2 1 37 37 H 1.08994 * 109.46952 * 59.99529 * 3 2 1 38 38 H 1.08001 * 125.57308 * 180.22730 * 7 5 4 39 39 H 1.07994 * 126.83373 * 179.97438 * 8 7 5 40 40 H 1.08997 * 109.81880 * 242.10464 * 13 12 10 41 41 H 1.08999 * 109.81134 * 3.01882 * 13 12 10 42 42 H 1.09001 * 109.14487 * 174.82214 * 14 13 12 43 43 H 1.08998 * 109.14971 * 293.98346 * 14 13 12 44 44 H 1.08999 * 110.54310 * 204.29451 * 19 17 15 45 45 H 1.09004 * 111.42478 * 80.57501 * 19 17 15 46 46 H 1.08993 * 109.90348 * 263.96309 * 20 19 17 47 47 H 1.08996 * 110.05403 * 142.80143 * 20 19 17 48 48 H 0.96998 * 120.00164 * 179.97438 * 25 24 22 49 49 H 1.09005 * 109.34553 * 355.82737 * 30 12 10 50 50 H 1.09002 * 109.35109 * 115.37504 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7796 -0.3538 2.5043 6 1 1.2409 0.4078 2.7702 7 6 2.3847 -1.2202 3.3673 8 6 3.0457 -2.1511 2.6565 9 6 2.8251 -1.8248 1.2435 10 6 3.3472 -2.5531 0.0749 11 8 3.7533 -1.9386 -0.8930 12 7 3.3751 -3.9005 0.0780 13 6 2.7822 -4.6686 1.1842 14 6 1.7278 -5.6041 0.5879 15 6 2.3172 -6.4593 -0.5101 16 1 1.5156 -7.0462 -0.9584 17 6 2.9950 -5.6364 -1.6213 18 1 2.2777 -5.1650 -2.2930 19 6 3.8294 -6.7420 -2.3281 20 6 4.3014 -7.6062 -1.1376 21 7 3.3514 -7.3803 -0.0329 22 6 3.4229 -7.9339 1.2175 23 1 2.6700 -7.6997 1.9556 24 6 4.4630 -8.7960 1.5364 25 7 5.3802 -9.0819 0.6367 26 14 4.5610 -9.5507 3.2423 27 1 3.8199 -10.8375 3.2577 28 1 5.9828 -9.7941 3.5950 29 1 3.9581 -8.6204 4.2304 30 6 3.9915 -4.6455 -1.0230 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 3.1300 1.4426 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 2.3406 -1.1669 4.4450 39 1 3.6242 -2.9747 3.0481 40 1 3.5546 -5.2532 1.6838 41 1 2.3133 -3.9893 1.8960 42 1 1.3377 -6.2505 1.3741 43 1 0.9120 -5.0086 0.1783 44 1 4.6807 -6.3042 -2.8495 45 1 3.2155 -7.3281 -3.0120 46 1 5.3031 -7.3033 -0.8332 47 1 4.3014 -8.6597 -1.4173 48 1 6.1073 -9.6840 0.8596 49 1 4.3123 -3.9474 -1.7963 50 1 4.8583 -5.1906 -0.6496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036799100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:39 Heat of formation + Delta-G solvation = 32.258703 kcal Electronic energy + Delta-G solvation = -30246.244276 eV Core-core repulsion = 26467.478530 eV Total energy + Delta-G solvation = -3778.765746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.38929 -39.62960 -37.83645 -35.42767 -34.68436 -32.78379 -31.49341 -31.06949 -29.16364 -28.54697 -27.44679 -27.37230 -25.28721 -24.13508 -22.48337 -22.32204 -21.49489 -20.44774 -19.94180 -18.91527 -17.82926 -17.43035 -16.34676 -15.94523 -15.52691 -15.08389 -14.85099 -14.58818 -14.34529 -14.20221 -14.15590 -13.82613 -13.45770 -13.19350 -13.06291 -13.00416 -12.65571 -12.44508 -12.39105 -12.10808 -12.04739 -11.41424 -11.37922 -11.32425 -11.21567 -11.02253 -10.99618 -10.93802 -10.72778 -10.55311 -10.10941 -9.91349 -9.81266 -9.56344 -9.53617 -9.40287 -8.65191 -8.56134 -8.21170 -7.92370 -6.76768 -5.67819 -3.00068 1.98758 2.50853 3.10585 3.40834 3.45647 3.48135 3.50362 3.75787 4.50784 4.51810 4.71464 4.95922 4.98476 5.16457 5.25731 5.32320 5.33364 5.42581 5.45052 5.49880 5.56132 5.63569 5.66892 5.69040 5.79864 5.82786 5.85809 5.91918 6.02249 6.03819 6.05464 6.15635 6.20597 6.28101 6.41259 6.43831 6.46789 6.55461 6.67684 6.77997 6.83109 6.88858 6.97167 7.01771 7.15556 7.43055 7.61005 7.66820 7.86109 8.03393 8.29106 8.70930 9.24803 9.87225 10.55461 11.44342 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.003801 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.009576 B = 7363.797344 C = 8387.517011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C -0.142 4.142 4 C 0.097 3.903 5 N -0.552 5.552 6 H 0.411 0.589 7 C -0.020 4.020 8 C -0.163 4.163 9 C -0.216 4.216 10 C 0.589 3.411 11 O -0.562 6.562 12 N -0.593 5.593 13 C 0.110 3.890 14 C -0.127 4.127 15 C 0.171 3.829 16 H 0.016 0.984 17 C -0.114 4.114 18 H 0.074 0.926 19 C -0.143 4.143 20 C 0.177 3.823 21 N -0.594 5.594 22 C -0.222 4.222 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.920 5.920 26 Si 0.906 3.094 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.128 3.872 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.167 0.833 39 H 0.148 0.852 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.041 0.959 48 H 0.251 0.749 49 H 0.077 0.923 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 18.091 1.669 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.058 4.058 3 C -0.199 4.199 4 C -0.020 4.020 5 N -0.147 5.147 6 H 0.247 0.753 7 C -0.147 4.147 8 C -0.188 4.188 9 C -0.226 4.226 10 C 0.378 3.622 11 O -0.443 6.443 12 N -0.323 5.323 13 C -0.012 4.012 14 C -0.166 4.166 15 C 0.063 3.937 16 H 0.033 0.967 17 C -0.135 4.135 18 H 0.092 0.908 19 C -0.182 4.182 20 C 0.052 3.948 21 N -0.320 5.320 22 C -0.350 4.350 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.568 5.568 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.207 1.207 30 C 0.006 3.994 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.185 0.815 39 H 0.166 0.834 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.096 0.904 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.908 18.323 1.365 20.419 hybrid contribution -0.121 -0.423 1.241 1.317 sum -9.029 17.900 2.606 20.216 Atomic orbital electron populations 1.21869 0.94422 1.02374 1.01692 1.19942 0.95313 0.95949 0.94598 1.21799 1.02038 0.94653 1.01432 1.20049 1.00383 0.96101 0.85432 1.41413 1.42509 1.25527 1.05294 0.75274 1.21683 1.02978 0.94401 0.95654 1.22117 1.04419 1.01091 0.91147 1.20163 1.08973 0.99952 0.93508 1.17412 0.77708 0.81443 0.85611 1.90699 1.49943 1.67760 1.35923 1.47863 1.57002 1.04728 1.22697 1.21965 0.96932 0.93757 0.88545 1.21574 0.97418 0.97844 0.99787 1.20262 0.91630 0.89956 0.91858 0.96672 1.22538 0.97618 0.95669 0.97660 0.90793 1.23048 0.98964 0.97193 0.99018 1.21235 0.93047 0.96375 0.84137 1.44335 1.26242 1.50868 1.10532 1.18957 1.07589 1.20792 0.87644 0.90390 1.24757 0.97602 1.00223 0.97788 1.69955 1.14860 1.39375 1.32596 0.86207 0.76819 0.79285 0.83983 1.21800 1.21840 1.20722 1.21383 0.95627 0.93421 0.88982 0.93245 0.91813 0.92106 0.87476 0.91869 0.91907 0.93429 0.81525 0.83449 0.89701 0.89705 0.90939 0.93019 0.92070 0.92342 0.93549 0.94065 0.93868 0.90410 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.18 37.16 0.34 -0.92 16 2 C -0.04 -0.43 3.23 -91.77 -0.30 -0.72 16 3 C -0.14 -1.28 9.18 37.16 0.34 -0.94 16 4 C 0.10 1.19 5.68 -81.88 -0.47 0.73 16 5 N -0.55 -5.15 5.90 -9.10 -0.05 -5.20 16 6 H 0.41 2.50 8.96 -40.82 -0.37 2.14 16 7 C -0.02 -0.20 11.89 -16.83 -0.20 -0.40 16 8 C -0.16 -2.14 8.70 -37.50 -0.33 -2.47 16 9 C -0.22 -3.27 5.35 -103.35 -0.55 -3.82 16 10 C 0.59 10.65 7.33 -12.60 -0.09 10.56 16 11 O -0.56 -11.42 15.14 5.26 0.08 -11.34 16 12 N -0.59 -10.75 2.94 -174.60 -0.51 -11.26 16 13 C 0.11 1.92 5.61 -3.66 -0.02 1.90 16 14 C -0.13 -2.27 5.18 -27.64 -0.14 -2.41 16 15 C 0.17 3.45 2.89 -68.37 -0.20 3.25 16 16 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 17 C -0.11 -2.10 3.78 -88.91 -0.34 -2.44 16 18 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 19 C -0.14 -2.71 6.32 -24.61 -0.16 -2.86 16 20 C 0.18 4.19 4.62 -2.74 -0.01 4.18 16 21 N -0.59 -14.30 3.08 -164.50 -0.51 -14.81 16 22 C -0.22 -5.78 8.95 -15.06 -0.13 -5.92 16 23 H 0.08 1.95 6.71 -52.49 -0.35 1.60 16 24 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 25 N -0.92 -26.43 10.38 55.49 0.58 -25.85 16 26 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 C 0.13 2.43 5.43 -4.16 -0.02 2.41 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.11 1.48 6.48 -51.93 -0.34 1.14 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.15 1.92 7.50 -52.49 -0.39 1.53 16 40 H 0.08 1.70 7.39 -51.93 -0.38 1.32 16 41 H 0.08 1.31 4.63 -51.93 -0.24 1.07 16 42 H 0.07 1.32 7.05 -51.93 -0.37 0.95 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 1.06 7.97 -51.93 -0.41 0.64 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 1.22 6.94 -51.93 -0.36 0.86 16 47 H 0.04 1.09 7.56 -51.93 -0.39 0.70 16 48 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.08 1.47 6.99 -51.93 -0.36 1.10 16 50 H 0.08 1.63 6.73 -51.93 -0.35 1.28 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -31.58 379.80 -10.19 -41.77 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.10 Total: 4.62 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.37 Total: -0.18 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.50 Total: -57.12 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.58 -10.19 -41.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036799100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.028 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds