Wall clock time and date at job start Sat Apr 11 2020 02:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 C 1.50696 * 109.47535 * 120.00101 * 2 1 3 5 5 N 1.34660 * 125.80128 * 300.02466 * 4 2 1 6 6 H 0.97000 * 124.85121 * 359.96011 * 5 4 2 7 7 C 1.36444 * 110.29834 * 179.97438 * 5 4 2 8 8 C 1.34490 * 108.85917 * 359.71574 * 7 5 4 9 9 C 1.36774 * 125.80332 * 119.99411 * 4 2 1 10 10 C 1.47265 * 126.93994 * 0.02977 * 9 4 2 11 11 O 1.21628 * 119.99859 * 49.15695 * 10 9 4 12 12 N 1.34772 * 119.99659 * 229.15914 * 10 9 4 13 13 C 1.46596 * 119.68439 * 355.78487 * 12 10 9 14 14 C 1.53962 * 110.54405 * 132.15842 * 13 12 10 15 15 C 1.51518 * 107.34642 * 51.07197 * 14 13 12 16 16 H 1.09001 * 109.28081 * 53.02490 * 15 14 13 17 17 C 1.55367 * 107.79432 * 295.14636 * 15 14 13 18 18 H 1.09002 * 111.50791 * 308.80966 * 17 15 14 19 19 C 1.53746 * 100.21791 * 190.91385 * 17 15 14 20 20 C 1.55289 * 101.84211 * 39.09221 * 19 17 15 21 21 N 1.45462 * 117.35100 * 178.09156 * 15 14 13 22 22 C 1.36939 * 126.40925 * 329.40117 * 21 15 14 23 23 H 1.08005 * 119.99270 * 359.97438 * 22 21 15 24 24 C 1.38811 * 120.00252 * 179.97438 * 22 21 15 25 25 N 1.31618 * 119.99899 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99605 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47102 * 90.00387 * 26 24 22 28 28 H 1.48497 * 109.46834 * 209.99966 * 26 24 22 29 29 H 1.48494 * 109.47662 * 329.99916 * 26 24 22 30 30 C 1.47708 * 119.66990 * 175.83496 * 12 10 9 31 31 H 1.09006 * 109.47189 * 300.00192 * 1 2 3 32 32 H 1.09000 * 109.47529 * 59.99813 * 1 2 3 33 33 H 1.09003 * 109.47549 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.47160 * 240.00358 * 2 1 3 35 35 H 1.08998 * 109.46800 * 60.00288 * 3 2 1 36 36 H 1.09005 * 109.46873 * 180.02562 * 3 2 1 37 37 H 1.08996 * 109.47283 * 299.99742 * 3 2 1 38 38 H 1.07999 * 125.57364 * 179.97438 * 7 5 4 39 39 H 1.07999 * 126.83593 * 180.26558 * 8 7 5 40 40 H 1.08997 * 109.25504 * 11.89461 * 13 12 10 41 41 H 1.09000 * 109.25477 * 252.42128 * 13 12 10 42 42 H 1.08996 * 109.88178 * 170.53389 * 14 13 12 43 43 H 1.09002 * 109.87972 * 291.54220 * 14 13 12 44 44 H 1.08995 * 110.95549 * 280.94986 * 19 17 15 45 45 H 1.09000 * 110.95359 * 157.22982 * 19 17 15 46 46 H 1.08994 * 109.91882 * 218.16976 * 20 19 17 47 47 H 1.09004 * 109.92014 * 96.86976 * 20 19 17 48 48 H 0.97005 * 119.99551 * 180.02562 * 25 24 22 49 49 H 1.09001 * 110.09440 * 112.86370 * 30 12 10 50 50 H 1.08999 * 110.15587 * 351.32084 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7797 -0.3539 2.5041 6 1 1.2413 0.4078 2.7702 7 6 2.3897 -1.2171 3.3671 8 6 3.0438 -2.1527 2.6561 9 6 2.8219 -1.8271 1.2432 10 6 3.3396 -2.5585 0.0745 11 8 3.8885 -1.9539 -0.8269 12 7 3.2050 -3.8976 0.0038 13 6 2.6261 -4.6297 1.1343 14 6 1.5446 -5.6106 0.6459 15 6 2.1518 -6.4321 -0.4732 16 1 3.0860 -6.8752 -0.1282 17 6 2.4646 -5.4701 -1.6525 18 1 1.5976 -4.8636 -1.9142 19 6 2.7875 -6.4893 -2.7574 20 6 1.7345 -7.5979 -2.4860 21 7 1.3211 -7.4667 -1.0693 22 6 0.3401 -8.1849 -0.4392 23 1 0.1232 -8.0034 0.6032 24 6 -0.3754 -9.1460 -1.1401 25 7 -0.1106 -9.3673 -2.4102 26 14 -1.7130 -10.1261 -0.2801 27 1 -3.0110 -9.4178 -0.4166 28 1 -1.8161 -11.4719 -0.8992 29 1 -1.3754 -10.2678 1.1590 30 6 3.6433 -4.6133 -1.2117 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9564 -0.8900 38 1 2.3499 -1.1608 4.4448 39 1 3.6201 -2.9779 3.0476 40 1 2.1799 -3.9204 1.8312 41 1 3.4132 -5.1865 1.6428 42 1 1.2410 -6.2646 1.4632 43 1 0.6823 -5.0567 0.2746 44 1 3.7998 -6.8775 -2.6459 45 1 2.6463 -6.0509 -3.7453 46 1 2.1770 -8.5796 -2.6544 47 1 0.8725 -7.4592 -3.1388 48 1 -0.6109 -10.0387 -2.9000 49 1 4.5014 -5.2459 -0.9848 50 1 3.9011 -3.9005 -1.9949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036799101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:57:05 Heat of formation + Delta-G solvation = 32.405318 kcal Electronic energy + Delta-G solvation = -29758.704841 eV Core-core repulsion = 25979.945453 eV Total energy + Delta-G solvation = -3778.759388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51292 -39.70557 -37.91761 -35.53228 -35.05128 -32.71491 -31.44776 -31.21630 -29.43273 -28.64048 -27.94247 -27.39689 -24.94526 -23.96686 -22.46300 -22.18857 -21.46234 -20.58060 -19.96971 -19.46863 -18.19881 -17.61596 -16.56715 -15.95364 -15.55260 -15.17248 -14.87445 -14.63550 -14.39785 -14.32910 -14.21483 -13.80878 -13.55768 -13.33753 -13.11446 -13.08675 -12.87277 -12.48108 -12.43338 -12.30988 -12.24353 -11.58478 -11.42580 -11.39675 -11.32677 -11.24503 -11.07783 -10.79051 -10.73587 -10.61043 -10.11216 -10.03344 -9.82398 -9.58872 -9.58489 -9.39165 -8.76240 -8.59137 -8.38370 -8.20186 -6.79232 -5.68241 -3.00925 1.91911 2.39299 2.96078 3.24502 3.41070 3.45909 3.48044 3.51467 4.43470 4.51996 4.65826 4.82006 4.92687 5.02479 5.16775 5.22674 5.28834 5.31244 5.36533 5.39642 5.48236 5.54314 5.56550 5.61229 5.69576 5.72448 5.78924 5.82140 5.91972 5.92698 6.00150 6.02498 6.10067 6.14990 6.25636 6.30763 6.34297 6.45791 6.59749 6.67894 6.69304 6.73879 6.87317 6.98155 7.15221 7.32725 7.59480 7.65800 7.73310 7.84695 8.28272 8.49387 9.23108 9.86831 10.55602 11.44382 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.015265 B = 0.003279 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.808805 B = 8536.321074 C = 9040.308732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 C -0.142 4.142 4 C 0.098 3.902 5 N -0.551 5.551 6 H 0.413 0.587 7 C -0.016 4.016 8 C -0.168 4.168 9 C -0.218 4.218 10 C 0.589 3.411 11 O -0.554 6.554 12 N -0.600 5.600 13 C 0.107 3.893 14 C -0.128 4.128 15 C 0.168 3.832 16 H 0.019 0.981 17 C -0.124 4.124 18 H 0.078 0.922 19 C -0.136 4.136 20 C 0.178 3.822 21 N -0.595 5.595 22 C -0.223 4.223 23 H 0.078 0.922 24 C -0.009 4.009 25 N -0.922 5.922 26 Si 0.909 3.091 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.128 3.872 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.168 0.832 39 H 0.145 0.855 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.037 0.963 47 H 0.054 0.946 48 H 0.251 0.749 49 H 0.067 0.933 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.500 19.473 9.395 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.057 4.057 3 C -0.200 4.200 4 C -0.018 4.018 5 N -0.146 5.146 6 H 0.249 0.751 7 C -0.144 4.144 8 C -0.193 4.193 9 C -0.228 4.228 10 C 0.378 3.622 11 O -0.434 6.434 12 N -0.331 5.331 13 C -0.016 4.016 14 C -0.167 4.167 15 C 0.059 3.941 16 H 0.036 0.964 17 C -0.144 4.144 18 H 0.097 0.903 19 C -0.175 4.175 20 C 0.053 3.947 21 N -0.320 5.320 22 C -0.351 4.351 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.569 5.569 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.006 3.994 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.185 0.815 39 H 0.163 0.837 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.085 0.915 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.568 19.644 8.941 22.061 hybrid contribution -1.032 -0.461 0.751 1.357 sum 3.536 19.183 9.692 21.781 Atomic orbital electron populations 1.21877 0.94136 1.02656 1.01827 1.19916 0.95585 0.95962 0.94256 1.21808 1.01971 0.94596 1.01595 1.20037 1.00282 0.96004 0.85523 1.41416 1.42233 1.25690 1.05261 0.75124 1.21682 1.02659 0.94320 0.95695 1.22000 1.05082 1.01223 0.90959 1.20121 1.09256 0.99940 0.93484 1.17521 0.78154 0.81445 0.85072 1.90732 1.44142 1.67981 1.40522 1.48140 1.61096 1.06099 1.17783 1.21976 0.96228 0.95359 0.88046 1.21870 0.97643 0.97285 0.99889 1.20638 0.93459 0.88371 0.91603 0.96397 1.22635 0.97540 0.96288 0.97972 0.90341 1.22716 1.00128 0.97499 0.97168 1.21521 0.93924 0.93748 0.85482 1.44217 1.40150 1.40067 1.07541 1.19000 1.09109 1.12907 0.94129 0.90420 1.24784 0.99971 0.99671 0.96100 1.69945 1.43093 1.36206 1.07703 0.86162 0.81931 0.79470 0.78475 1.21725 1.21743 1.20739 1.21570 0.96413 0.95028 0.86386 0.93165 0.91678 0.91896 0.87914 0.93338 0.91873 0.91795 0.81472 0.83683 0.88898 0.92173 0.90821 0.91628 0.92362 0.92120 0.94440 0.92793 0.93823 0.91521 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.17 37.15 0.34 -0.98 16 2 C -0.04 -0.40 3.27 -91.78 -0.30 -0.70 16 3 C -0.14 -1.22 9.18 37.16 0.34 -0.88 16 4 C 0.10 1.12 5.68 -81.88 -0.47 0.66 16 5 N -0.55 -4.63 5.90 -9.11 -0.05 -4.68 16 6 H 0.41 2.23 8.96 -40.82 -0.37 1.87 16 7 C -0.02 -0.13 11.89 -16.82 -0.20 -0.33 16 8 C -0.17 -1.85 8.71 -37.50 -0.33 -2.18 16 9 C -0.22 -2.97 5.16 -103.35 -0.53 -3.51 16 10 C 0.59 9.63 7.11 -12.59 -0.09 9.54 16 11 O -0.55 -10.48 15.60 5.25 0.08 -10.39 16 12 N -0.60 -9.47 3.00 -173.82 -0.52 -9.99 16 13 C 0.11 1.55 5.69 -3.49 -0.02 1.53 16 14 C -0.13 -2.25 5.48 -26.98 -0.15 -2.40 16 15 C 0.17 3.42 2.58 -67.98 -0.18 3.24 16 16 H 0.02 0.39 7.90 -51.93 -0.41 -0.02 16 17 C -0.12 -2.29 2.86 -89.37 -0.26 -2.54 16 18 H 0.08 1.57 8.13 -51.93 -0.42 1.14 16 19 C -0.14 -2.59 6.54 -25.13 -0.16 -2.76 16 20 C 0.18 4.33 5.45 -1.92 -0.01 4.32 16 21 N -0.60 -15.03 3.35 -163.10 -0.55 -15.57 16 22 C -0.22 -6.11 9.88 -15.06 -0.15 -6.26 16 23 H 0.08 2.04 7.21 -52.48 -0.38 1.66 16 24 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 25 N -0.92 -27.12 10.44 55.49 0.58 -26.54 16 26 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 C 0.13 2.09 5.94 -3.77 -0.02 2.07 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 1.37 6.81 -51.92 -0.35 1.01 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.15 1.43 7.73 -52.49 -0.41 1.02 16 40 H 0.09 1.22 4.64 -51.93 -0.24 0.98 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.30 7.62 -51.93 -0.40 0.91 16 43 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 44 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 47 H 0.05 1.46 7.21 -51.93 -0.37 1.09 16 48 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 50 H 0.09 1.47 7.03 -51.93 -0.36 1.10 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -33.06 386.06 -10.26 -43.32 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.32 Total: 2.56 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.27 Total: -1.53 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.54 Total: -56.79 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.06 -10.26 -43.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036799101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.727 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds