Wall clock time and date at job start Sat Apr 11 2020 02:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47311 * 2 1 4 4 C 1.38669 * 120.42419 * 270.02484 * 3 2 1 5 5 C 1.38624 * 118.42439 * 179.70780 * 4 3 2 6 6 C 1.38233 * 119.15862 * 0.50709 * 5 4 3 7 7 C 1.50694 * 119.61767 * 179.75657 * 6 5 4 8 8 C 1.50699 * 109.47554 * 124.72899 * 7 6 5 9 9 O 1.21286 * 119.99302 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00187 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00002 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47161 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.70174 * 298.97435 * 12 11 10 14 14 C 1.52759 * 109.50865 * 178.85445 * 12 11 10 15 15 C 1.53039 * 109.38246 * 185.70806 * 14 12 11 16 16 C 1.53038 * 109.54055 * 61.24220 * 15 14 12 17 17 C 1.53195 * 109.30892 * 298.63384 * 16 15 14 18 18 N 1.46927 * 109.58340 * 59.32841 * 12 11 10 19 19 C 1.36932 * 120.63320 * 353.41967 * 18 12 11 20 20 H 1.08002 * 120.00295 * 30.60374 * 19 18 12 21 21 C 1.38811 * 119.99814 * 210.60219 * 19 18 12 22 22 N 1.31617 * 120.00333 * 22.29269 * 21 19 18 23 23 Si 1.86805 * 120.00228 * 202.28907 * 21 19 18 24 24 H 1.48489 * 109.47265 * 180.02562 * 23 21 19 25 25 H 1.48497 * 109.46984 * 300.00426 * 23 21 19 26 26 H 1.48503 * 109.46679 * 59.99915 * 23 21 19 27 27 N 1.31852 * 120.76113 * 359.48212 * 6 5 4 28 28 C 1.31880 * 121.72838 * 0.27249 * 27 6 5 29 29 H 1.08997 * 109.46927 * 300.00112 * 1 2 3 30 30 H 1.09010 * 109.47060 * 59.99589 * 1 2 3 31 31 H 1.09002 * 109.46871 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47101 * 240.00388 * 2 1 3 33 33 H 1.08997 * 109.47028 * 120.00133 * 2 1 3 34 34 H 1.08002 * 120.78486 * 359.97438 * 4 3 2 35 35 H 1.07994 * 120.42264 * 180.28617 * 5 4 3 36 36 H 1.09009 * 109.47080 * 4.72726 * 7 6 5 37 37 H 1.09001 * 109.47278 * 244.73148 * 7 6 5 38 38 H 0.97002 * 120.00221 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.46932 * 60.00023 * 11 10 8 40 40 H 1.09000 * 109.46980 * 299.99990 * 11 10 8 41 41 H 1.09002 * 109.56557 * 65.66703 * 14 12 11 42 42 H 1.08999 * 109.38786 * 305.63397 * 14 12 11 43 43 H 1.08998 * 109.45915 * 301.21695 * 15 14 12 44 44 H 1.09006 * 109.44825 * 181.25633 * 15 14 12 45 45 H 1.08999 * 109.49704 * 178.68655 * 16 15 14 46 46 H 1.08997 * 109.49726 * 58.57924 * 16 15 14 47 47 H 1.08990 * 109.59026 * 294.84736 * 17 16 15 48 48 H 1.09000 * 109.70191 * 174.49229 * 17 16 15 49 49 H 0.97001 * 119.99508 * 5.31243 * 22 21 19 50 50 H 1.08006 * 119.61953 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2660 2.0831 -1.1957 5 6 2.7220 3.3913 -1.1474 6 6 2.9373 3.9844 0.0825 7 6 3.4382 5.4042 0.1471 8 6 2.4961 6.2318 0.9829 9 8 1.5142 5.7191 1.4770 10 7 2.7445 7.5415 1.1812 11 6 1.8289 8.3459 1.9942 12 6 2.3374 9.7874 2.0596 13 1 3.3229 9.8087 2.5248 14 6 1.3682 10.6334 2.8834 15 6 1.8016 12.1001 2.8290 16 6 1.7632 12.5917 1.3803 17 6 2.7424 11.7667 0.5392 18 7 2.4216 10.3421 0.7017 19 6 2.1996 9.5478 -0.3914 20 1 1.5178 8.7131 -0.3229 21 6 2.8510 9.8156 -1.5876 22 7 3.9694 10.5095 -1.5870 23 14 2.1404 9.1909 -3.1983 24 1 3.0185 9.6069 -4.3211 25 1 2.0554 7.7088 -3.1600 26 1 0.7827 9.7597 -3.3940 27 7 2.7044 3.3241 1.1997 28 6 2.2656 2.0804 1.1917 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0926 1.5926 -2.1423 35 1 2.9101 3.9389 -2.0590 36 1 3.4891 5.8178 -0.8602 37 1 4.4311 5.4191 0.5965 38 1 3.5300 7.9514 0.7863 39 1 1.7782 7.9320 3.0012 40 1 0.8359 8.3313 1.5449 41 1 1.3732 10.2906 3.9182 42 1 0.3633 10.5355 2.4727 43 1 2.8157 12.1938 3.2176 44 1 1.1237 12.7016 3.4347 45 1 2.0495 13.6429 1.3451 46 1 0.7549 12.4752 0.9831 47 1 3.7616 11.9526 0.8778 48 1 2.6498 12.0447 -0.5107 49 1 4.3794 10.7678 -0.7467 50 1 2.0858 1.5718 2.1273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266856412.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:38 Heat of formation + Delta-G solvation = -15.158804 kcal Electronic energy + Delta-G solvation = -28914.568076 eV Core-core repulsion = 25133.746153 eV Total energy + Delta-G solvation = -3780.821923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.48823 -40.52138 -39.37503 -35.97153 -35.59512 -35.15436 -33.37286 -32.66184 -31.93959 -31.49279 -28.96077 -27.43887 -26.27165 -24.74348 -24.27453 -23.73233 -22.52923 -22.02772 -21.23939 -20.69407 -19.14586 -17.97640 -17.58457 -17.40853 -17.12067 -16.50834 -16.10335 -15.93922 -15.75917 -15.47095 -15.16513 -15.03815 -14.90103 -14.71553 -14.44479 -14.32505 -14.00256 -13.93846 -13.71107 -13.49325 -13.27457 -13.13229 -12.96693 -12.77276 -12.72381 -12.51937 -12.17441 -11.97480 -11.94448 -11.83037 -11.71833 -11.64488 -11.29352 -11.04538 -10.77956 -10.67514 -10.42196 -10.25065 -9.81455 -9.68709 -8.79742 -8.07399 -5.30328 0.13720 0.41568 1.57772 1.63385 1.80266 1.82168 2.38076 2.65601 2.90633 3.30015 3.30499 3.49508 3.76585 3.85480 3.92046 3.97767 4.05473 4.08612 4.12789 4.18629 4.30513 4.33067 4.44992 4.46613 4.49739 4.51362 4.55495 4.61570 4.68808 4.73170 4.78176 4.88659 4.94715 5.01748 5.05049 5.07734 5.08726 5.15109 5.21205 5.27839 5.29768 5.35434 5.36877 5.42709 5.58762 5.67726 5.82057 6.03354 6.51680 6.76564 7.13289 7.13632 7.41739 7.86188 8.32535 9.14443 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.003164 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.182167 B = 8847.268798 C =10075.265105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.137 4.137 4 C -0.078 4.078 5 C -0.171 4.171 6 C 0.118 3.882 7 C -0.089 4.089 8 C 0.512 3.488 9 O -0.583 6.583 10 N -0.695 5.695 11 C 0.146 3.854 12 C 0.162 3.838 13 H 0.032 0.968 14 C -0.123 4.123 15 C -0.102 4.102 16 C -0.131 4.131 17 C 0.156 3.844 18 N -0.608 5.608 19 C -0.328 4.328 20 H 0.049 0.951 21 C -0.060 4.060 22 N -0.943 5.943 23 Si 1.092 2.908 24 H -0.293 1.293 25 H -0.274 1.274 26 H -0.296 1.296 27 N -0.490 5.490 28 C 0.083 3.917 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.163 0.837 35 H 0.150 0.850 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.410 0.590 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.045 0.955 47 H 0.009 0.991 48 H 0.041 0.959 49 H 0.259 0.741 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.849 -14.230 3.855 14.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.139 4.139 4 C -0.103 4.103 5 C -0.190 4.190 6 C -0.020 4.020 7 C -0.129 4.129 8 C 0.299 3.701 9 O -0.464 6.464 10 N -0.345 5.345 11 C 0.022 3.978 12 C 0.056 3.944 13 H 0.050 0.950 14 C -0.163 4.163 15 C -0.139 4.139 16 C -0.170 4.170 17 C 0.031 3.969 18 N -0.334 5.334 19 C -0.458 4.458 20 H 0.067 0.933 21 C -0.258 4.258 22 N -0.585 5.585 23 Si 0.919 3.081 24 H -0.219 1.219 25 H -0.200 1.200 26 H -0.223 1.223 27 N -0.198 5.198 28 C -0.074 4.074 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.181 0.819 35 H 0.168 0.832 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.247 0.753 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.027 0.973 48 H 0.060 0.940 49 H 0.069 0.931 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.198 -14.157 3.355 14.714 hybrid contribution -0.019 0.314 0.545 0.629 sum -2.217 -13.844 3.900 14.552 Atomic orbital electron populations 1.21760 0.94504 1.02666 1.01523 1.20510 0.96099 0.89935 1.04532 1.21244 0.99809 0.99213 0.93589 1.21791 0.95468 0.93573 0.99483 1.22215 1.01186 0.97027 0.98604 1.20696 0.96828 0.94999 0.89458 1.20604 0.99855 0.89934 1.02499 1.20640 0.86358 0.82293 0.80832 1.90628 1.30975 1.72522 1.52275 1.45971 1.28459 1.08249 1.51823 1.21112 0.92705 0.90324 0.93706 1.20760 0.96459 0.90693 0.86440 0.95007 1.21825 0.98700 0.96051 0.99712 1.21344 1.01445 0.95364 0.95777 1.21961 0.99447 0.99021 0.96544 1.20821 0.94458 0.83837 0.97819 1.44315 1.83504 1.04589 1.01005 1.19977 1.21714 1.12559 0.91510 0.93330 1.26579 0.94930 1.00614 1.03664 1.70875 1.16394 1.41495 1.29727 0.83125 0.74617 0.76341 0.73977 1.21859 1.20012 1.22289 1.67352 1.11603 1.09035 1.31854 1.22974 0.95692 0.89842 0.98928 0.93729 0.93207 0.90326 0.89084 0.89506 0.81934 0.83242 0.86284 0.85959 0.75338 0.91722 0.94454 0.90064 0.93160 0.92140 0.90500 0.91259 0.93615 0.97282 0.94048 0.93058 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.89 71.98 0.71 -1.38 16 2 C -0.07 -1.01 6.09 29.85 0.18 -0.83 16 3 C -0.14 -2.95 5.15 -19.77 -0.10 -3.05 16 4 C -0.08 -1.68 9.86 22.47 0.22 -1.46 16 5 C -0.17 -4.52 9.71 22.36 0.22 -4.31 16 6 C 0.12 3.82 5.76 42.55 0.25 4.06 16 7 C -0.09 -2.88 6.10 29.10 0.18 -2.70 16 8 C 0.51 20.51 7.76 87.66 0.68 21.19 16 9 O -0.58 -27.20 15.33 -3.05 -0.05 -27.25 16 10 N -0.69 -27.63 3.79 -463.06 -1.76 -29.39 16 11 C 0.15 5.76 4.43 86.38 0.38 6.14 16 12 C 0.16 6.22 3.01 44.83 0.13 6.35 16 13 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 14 C -0.12 -3.96 5.34 30.53 0.16 -3.79 16 15 C -0.10 -3.02 5.88 30.62 0.18 -2.84 16 16 C -0.13 -4.59 6.08 30.67 0.19 -4.40 16 17 C 0.16 6.89 4.68 86.36 0.40 7.29 16 18 N -0.61 -27.63 2.81 -676.03 -1.90 -29.53 16 19 C -0.33 -16.48 6.84 84.03 0.58 -15.90 16 20 H 0.05 2.58 5.88 -2.91 -0.02 2.56 16 21 C -0.06 -3.13 4.74 84.86 0.40 -2.73 16 22 N -0.94 -52.70 12.50 21.65 0.27 -52.43 16 23 Si 1.09 48.91 29.97 68.60 2.06 50.96 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.30 -13.18 7.11 99.48 0.71 -12.48 16 27 N -0.49 -16.78 9.22 -183.88 -1.70 -18.48 16 28 C 0.08 2.26 10.86 84.67 0.92 3.18 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.95 8.10 -2.39 -0.02 0.93 16 33 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 34 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.15 3.37 7.95 -2.91 -0.02 3.34 16 36 H 0.12 3.57 7.87 -2.38 -0.02 3.55 16 37 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 38 H 0.41 16.74 7.32 -92.71 -0.68 16.06 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.04 1.66 7.47 -2.39 -0.02 1.64 16 41 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.08 1.89 8.14 -2.38 -0.02 1.88 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.01 0.41 7.81 -2.39 -0.02 0.40 16 48 H 0.04 2.10 6.45 -2.39 -0.02 2.09 16 49 H 0.26 14.63 6.58 -92.71 -0.61 14.02 16 50 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -68.00 394.49 3.01 -64.99 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.40 Total: 36.31 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 5.68 Total: 4.81 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -5.08 Total: -129.83 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.05 Total: -27.25 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.06 Total: 50.96 kcal Total: -68.00 3.01 -64.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266856412.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.829 kcal (2) G-P(sol) polarization free energy of solvation -67.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds