Wall clock time and date at job start Sat Apr 11 2020 02:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47061 * 2 1 4 4 C 1.38677 * 120.41429 * 269.72403 * 3 2 1 5 5 C 1.38628 * 118.41684 * 180.27664 * 4 3 2 6 6 C 1.38225 * 119.16460 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.62266 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47111 * 125.01658 * 7 6 5 9 9 O 1.21280 * 119.99863 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99885 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00126 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47294 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.58354 * 59.68521 * 12 11 10 14 14 C 1.53188 * 109.58634 * 179.97438 * 12 11 10 15 15 C 1.53046 * 109.31388 * 174.42305 * 14 12 11 16 16 C 1.53037 * 109.53634 * 298.63978 * 15 14 12 17 17 C 1.53190 * 109.31458 * 61.36149 * 16 15 14 18 18 N 1.46919 * 109.59081 * 299.40178 * 12 11 10 19 19 C 1.36948 * 120.62826 * 6.60495 * 18 12 11 20 20 H 1.07995 * 119.99993 * 329.10537 * 19 18 12 21 21 C 1.38808 * 119.99528 * 149.10250 * 19 18 12 22 22 N 1.31620 * 120.00434 * 346.09469 * 21 19 18 23 23 Si 1.86800 * 119.99554 * 166.09699 * 21 19 18 24 24 H 1.48502 * 109.47359 * 59.99839 * 23 21 19 25 25 H 1.48503 * 109.47243 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47188 * 299.99820 * 23 21 19 27 27 N 1.31857 * 120.76128 * 359.97438 * 6 5 4 28 28 C 1.31887 * 121.72463 * 0.02562 * 27 6 5 29 29 H 1.08990 * 109.47542 * 59.99724 * 1 2 3 30 30 H 1.08998 * 109.46762 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46758 * 299.99688 * 1 2 3 32 32 H 1.09003 * 109.47200 * 240.00133 * 2 1 3 33 33 H 1.08998 * 109.48063 * 119.99896 * 2 1 3 34 34 H 1.07998 * 120.79612 * 0.27299 * 4 3 2 35 35 H 1.08003 * 120.41754 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.47503 * 245.02004 * 7 6 5 37 37 H 1.09005 * 109.46840 * 5.02220 * 7 6 5 38 38 H 0.97003 * 120.00005 * 0.02562 * 10 8 7 39 39 H 1.08997 * 109.46710 * 300.00197 * 11 10 8 40 40 H 1.09005 * 109.47078 * 60.00074 * 11 10 8 41 41 H 1.09000 * 109.50063 * 294.37824 * 14 12 11 42 42 H 1.09003 * 109.49751 * 54.47858 * 14 12 11 43 43 H 1.08997 * 109.45497 * 58.65921 * 15 14 12 44 44 H 1.09000 * 109.46318 * 178.62985 * 15 14 12 45 45 H 1.09001 * 109.49525 * 181.31321 * 16 15 14 46 46 H 1.08997 * 109.50022 * 301.41135 * 16 15 14 47 47 H 1.09001 * 109.58632 * 65.15396 * 17 16 15 48 48 H 1.08999 * 109.58981 * 185.43020 * 17 16 15 49 49 H 0.96998 * 119.99655 * 180.02562 * 22 21 19 50 50 H 1.07998 * 119.61414 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2717 2.0808 -1.1959 5 6 2.7389 3.3851 -1.1476 6 6 2.9494 3.9801 0.0822 7 6 3.4576 5.3973 0.1468 8 6 2.5182 6.2303 0.9804 9 8 1.5334 5.7229 1.4738 10 7 2.7726 7.5391 1.1775 11 6 1.8598 8.3487 1.9883 12 6 2.3757 9.7876 2.0538 13 1 2.4360 10.2003 1.0467 14 6 1.4226 10.6368 2.9006 15 6 2.0142 12.0371 3.0780 16 6 3.3537 11.9376 3.8114 17 6 4.3287 11.1031 2.9749 18 7 3.7074 9.8058 2.6741 19 6 4.3555 8.6361 2.9693 20 1 3.7878 7.7551 3.2297 21 6 5.7421 8.5830 2.9338 22 7 6.4235 9.5526 2.3611 23 14 6.6411 7.1353 3.6989 24 1 6.2167 5.8793 3.0298 25 1 8.1054 7.3165 3.5299 26 1 6.3161 7.0595 5.1460 27 7 2.7108 3.3218 1.1995 28 6 2.2661 2.0802 1.1915 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8899 34 1 2.0985 1.5904 -2.1424 35 1 2.9365 3.9293 -2.0593 36 1 4.4498 5.4074 0.5979 37 1 3.5123 5.8099 -0.8607 38 1 3.5602 7.9449 0.7825 39 1 0.8674 8.3383 1.5378 40 1 1.8058 7.9363 2.9959 41 1 0.4577 10.7105 2.3990 42 1 1.2908 10.1713 3.8773 43 1 2.1688 12.4925 2.0998 44 1 1.3266 12.6509 3.6598 45 1 3.7633 12.9370 3.9580 46 1 3.2038 11.4597 4.7795 47 1 4.5501 11.6246 2.0437 48 1 5.2508 10.9481 3.5349 49 1 7.3924 9.5152 2.3360 50 1 2.0825 1.5731 2.1272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266856413.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:43 Heat of formation + Delta-G solvation = 3.545369 kcal Electronic energy + Delta-G solvation = -28854.887681 eV Core-core repulsion = 25074.876832 eV Total energy + Delta-G solvation = -3780.010849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.36955 -38.94344 -37.61257 -35.00442 -34.00471 -33.03019 -32.25392 -31.44745 -30.54632 -29.87993 -27.81645 -25.82945 -24.66272 -23.78250 -23.23893 -22.12278 -21.21763 -20.61884 -19.69452 -19.03735 -16.99681 -16.68422 -16.19536 -15.96324 -15.53328 -15.41825 -14.82382 -14.51110 -14.09475 -14.00742 -13.93775 -13.76896 -13.49676 -13.37504 -13.03098 -12.88902 -12.82832 -12.41264 -12.36781 -12.17624 -11.95116 -11.93060 -11.46213 -11.43369 -11.13991 -11.12572 -10.89018 -10.74140 -10.51166 -10.27209 -10.12075 -9.97359 -9.69274 -9.51236 -9.42005 -9.27639 -9.06431 -8.66212 -8.53762 -8.11396 -6.63396 -5.81778 -3.27721 1.16357 1.40327 3.33859 3.38886 3.42815 3.48403 3.73973 4.11784 4.37816 4.46539 4.65819 4.69477 4.87071 4.95991 5.14404 5.20941 5.26120 5.28669 5.35121 5.48261 5.54591 5.56453 5.59168 5.65558 5.66570 5.70730 5.73479 5.86877 5.94773 5.99634 6.01392 6.10330 6.17360 6.19158 6.29151 6.36336 6.38043 6.45638 6.62051 6.73194 6.75095 6.79024 6.87632 7.02027 7.28963 7.39812 7.66445 7.83133 8.22101 8.37575 8.43655 9.00726 9.19233 9.80576 10.38523 11.25263 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.003119 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.172228 B = 8975.548571 C =10097.502875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 C -0.147 4.147 4 C -0.077 4.077 5 C -0.167 4.167 6 C 0.150 3.850 7 C -0.097 4.097 8 C 0.516 3.484 9 O -0.548 6.548 10 N -0.697 5.697 11 C 0.137 3.863 12 C 0.161 3.839 13 H 0.031 0.969 14 C -0.128 4.128 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.173 3.827 18 N -0.588 5.588 19 C -0.250 4.250 20 H 0.071 0.929 21 C 0.009 3.991 22 N -0.901 5.901 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.284 1.284 27 N -0.449 5.449 28 C 0.106 3.894 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.414 0.586 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.044 0.956 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.018 0.982 48 H 0.084 0.916 49 H 0.254 0.746 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.883 -9.951 -7.606 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.149 4.149 4 C -0.103 4.103 5 C -0.187 4.187 6 C 0.012 3.988 7 C -0.137 4.137 8 C 0.300 3.700 9 O -0.427 6.427 10 N -0.348 5.348 11 C 0.013 3.987 12 C 0.054 3.946 13 H 0.048 0.952 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.184 4.184 17 C 0.048 3.952 18 N -0.312 5.312 19 C -0.379 4.379 20 H 0.089 0.911 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.211 1.211 27 N -0.157 5.157 28 C -0.052 4.052 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.251 0.749 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.036 0.964 48 H 0.102 0.898 49 H 0.064 0.936 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.236 -9.857 -6.480 14.386 hybrid contribution 0.875 -0.833 -0.496 1.306 sum -7.360 -10.690 -6.976 14.734 Atomic orbital electron populations 1.21758 0.94682 1.01609 1.02445 1.20429 0.96171 0.92022 1.02864 1.20877 1.01798 0.97774 0.94438 1.21342 0.96750 0.94275 0.97908 1.21913 1.02000 0.96107 0.98700 1.20651 0.94590 0.95055 0.88483 1.20628 1.00940 0.90008 1.02128 1.20010 0.86099 0.82431 0.81418 1.90658 1.29284 1.71870 1.50867 1.45946 1.28370 1.08669 1.51834 1.21230 0.91193 0.90768 0.95508 1.20718 0.87393 0.91915 0.94572 0.95155 1.21944 0.97652 0.96412 1.00736 1.21361 0.97122 0.96177 0.99824 1.22195 0.96721 0.99429 1.00016 1.20752 0.94546 0.84141 0.95769 1.44066 1.14788 1.02646 1.69670 1.19196 0.88762 0.90060 1.39906 0.91140 1.25045 0.97217 0.97463 0.99327 1.70000 1.06280 1.33391 1.44880 0.86529 0.78611 0.82740 0.79929 1.20592 1.21746 1.21069 1.67499 1.09750 1.07504 1.30906 1.22625 0.94983 0.90314 0.97252 0.92639 0.92390 0.92345 0.91107 0.90822 0.85226 0.84892 0.86840 0.87783 0.74905 0.92967 0.91753 0.93087 0.92117 0.92899 0.93770 0.93563 0.92858 0.96414 0.89787 0.93629 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.08 -0.65 6.09 -27.88 -0.17 -0.82 16 3 C -0.15 -1.72 5.15 -104.48 -0.54 -2.26 16 4 C -0.08 -0.87 9.86 -39.28 -0.39 -1.25 16 5 C -0.17 -2.13 9.71 -39.44 -0.38 -2.51 16 6 C 0.15 2.42 5.76 -82.59 -0.48 1.95 16 7 C -0.10 -1.53 6.10 -29.03 -0.18 -1.71 16 8 C 0.52 10.00 7.76 -10.98 -0.09 9.91 16 9 O -0.55 -12.35 15.33 5.56 0.09 -12.27 16 10 N -0.70 -13.42 3.85 -60.29 -0.23 -13.65 16 11 C 0.14 2.65 4.43 -4.04 -0.02 2.63 16 12 C 0.16 3.13 3.00 -67.61 -0.20 2.93 16 13 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 14 C -0.13 -2.18 5.37 -26.61 -0.14 -2.32 16 15 C -0.11 -1.77 5.88 -26.69 -0.16 -1.93 16 16 C -0.14 -2.70 6.08 -26.61 -0.16 -2.86 16 17 C 0.17 3.92 5.26 -3.70 -0.02 3.90 16 18 N -0.59 -13.45 2.98 -164.76 -0.49 -13.94 16 19 C -0.25 -6.25 7.00 -15.06 -0.11 -6.36 16 20 H 0.07 1.84 5.85 -52.49 -0.31 1.53 16 21 C 0.01 0.22 4.97 -17.43 -0.09 0.13 16 22 N -0.90 -24.34 11.23 55.49 0.62 -23.72 16 23 Si 0.89 21.31 29.58 -169.99 -5.03 16.28 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 N -0.45 -8.03 9.22 -9.48 -0.09 -8.12 16 28 C 0.11 1.53 10.86 -17.55 -0.19 1.34 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.13 1.31 7.95 -52.48 -0.42 0.90 16 36 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 37 H 0.10 1.27 7.87 -51.93 -0.41 0.86 16 38 H 0.41 8.14 7.43 -40.82 -0.30 7.83 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.39 7.40 -51.93 -0.38 1.00 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 2.15 6.20 -51.93 -0.32 1.82 16 49 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 50 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -30.86 395.86 -10.56 -41.42 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -8.46 Total: 8.06 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.93 Total: -0.04 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.19 Total: -59.42 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.86 -10.56 -41.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266856413.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.966 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds