Wall clock time and date at job start Sat Apr 11 2020 02:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47061 * 2 1 4 4 C 1.38677 * 120.41429 * 269.72403 * 3 2 1 5 5 C 1.38628 * 118.41684 * 180.27664 * 4 3 2 6 6 C 1.38225 * 119.16460 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.62266 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47111 * 125.01658 * 7 6 5 9 9 O 1.21280 * 119.99863 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99885 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00126 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47294 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.58354 * 59.68521 * 12 11 10 14 14 C 1.53188 * 109.58634 * 179.97438 * 12 11 10 15 15 C 1.53046 * 109.31388 * 174.42305 * 14 12 11 16 16 C 1.53037 * 109.53634 * 298.63978 * 15 14 12 17 17 C 1.53190 * 109.31458 * 61.36149 * 16 15 14 18 18 N 1.46919 * 109.59081 * 299.40178 * 12 11 10 19 19 C 1.36948 * 120.62826 * 6.60495 * 18 12 11 20 20 H 1.07995 * 119.99993 * 329.10537 * 19 18 12 21 21 C 1.38808 * 119.99528 * 149.10250 * 19 18 12 22 22 N 1.31620 * 120.00434 * 346.09469 * 21 19 18 23 23 Si 1.86800 * 119.99554 * 166.09699 * 21 19 18 24 24 H 1.48502 * 109.47359 * 59.99839 * 23 21 19 25 25 H 1.48503 * 109.47243 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47188 * 299.99820 * 23 21 19 27 27 N 1.31857 * 120.76128 * 359.97438 * 6 5 4 28 28 C 1.31887 * 121.72463 * 0.02562 * 27 6 5 29 29 H 1.08990 * 109.47542 * 59.99724 * 1 2 3 30 30 H 1.08998 * 109.46762 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46758 * 299.99688 * 1 2 3 32 32 H 1.09003 * 109.47200 * 240.00133 * 2 1 3 33 33 H 1.08998 * 109.48063 * 119.99896 * 2 1 3 34 34 H 1.07998 * 120.79612 * 0.27299 * 4 3 2 35 35 H 1.08003 * 120.41754 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.47503 * 245.02004 * 7 6 5 37 37 H 1.09005 * 109.46840 * 5.02220 * 7 6 5 38 38 H 0.97003 * 120.00005 * 0.02562 * 10 8 7 39 39 H 1.08997 * 109.46710 * 300.00197 * 11 10 8 40 40 H 1.09005 * 109.47078 * 60.00074 * 11 10 8 41 41 H 1.09000 * 109.50063 * 294.37824 * 14 12 11 42 42 H 1.09003 * 109.49751 * 54.47858 * 14 12 11 43 43 H 1.08997 * 109.45497 * 58.65921 * 15 14 12 44 44 H 1.09000 * 109.46318 * 178.62985 * 15 14 12 45 45 H 1.09001 * 109.49525 * 181.31321 * 16 15 14 46 46 H 1.08997 * 109.50022 * 301.41135 * 16 15 14 47 47 H 1.09001 * 109.58632 * 65.15396 * 17 16 15 48 48 H 1.08999 * 109.58981 * 185.43020 * 17 16 15 49 49 H 0.96998 * 119.99655 * 180.02562 * 22 21 19 50 50 H 1.07998 * 119.61414 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2717 2.0808 -1.1959 5 6 2.7389 3.3851 -1.1476 6 6 2.9494 3.9801 0.0822 7 6 3.4576 5.3973 0.1468 8 6 2.5182 6.2303 0.9804 9 8 1.5334 5.7229 1.4738 10 7 2.7726 7.5391 1.1775 11 6 1.8598 8.3487 1.9883 12 6 2.3757 9.7876 2.0538 13 1 2.4360 10.2003 1.0467 14 6 1.4226 10.6368 2.9006 15 6 2.0142 12.0371 3.0780 16 6 3.3537 11.9376 3.8114 17 6 4.3287 11.1031 2.9749 18 7 3.7074 9.8058 2.6741 19 6 4.3555 8.6361 2.9693 20 1 3.7878 7.7551 3.2297 21 6 5.7421 8.5830 2.9338 22 7 6.4235 9.5526 2.3611 23 14 6.6411 7.1353 3.6989 24 1 6.2167 5.8793 3.0298 25 1 8.1054 7.3165 3.5299 26 1 6.3161 7.0595 5.1460 27 7 2.7108 3.3218 1.1995 28 6 2.2661 2.0802 1.1915 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8899 34 1 2.0985 1.5904 -2.1424 35 1 2.9365 3.9293 -2.0593 36 1 4.4498 5.4074 0.5979 37 1 3.5123 5.8099 -0.8607 38 1 3.5602 7.9449 0.7825 39 1 0.8674 8.3383 1.5378 40 1 1.8058 7.9363 2.9959 41 1 0.4577 10.7105 2.3990 42 1 1.2908 10.1713 3.8773 43 1 2.1688 12.4925 2.0998 44 1 1.3266 12.6509 3.6598 45 1 3.7633 12.9370 3.9580 46 1 3.2038 11.4597 4.7795 47 1 4.5501 11.6246 2.0437 48 1 5.2508 10.9481 3.5349 49 1 7.3924 9.5152 2.3360 50 1 2.0825 1.5731 2.1272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266856413.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:41 Heat of formation + Delta-G solvation = -13.771665 kcal Electronic energy + Delta-G solvation = -28855.638604 eV Core-core repulsion = 25074.876832 eV Total energy + Delta-G solvation = -3780.761772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.46859 -40.43778 -39.21074 -35.94122 -35.53657 -34.88016 -33.36333 -32.60852 -31.95064 -31.60919 -28.93393 -27.49808 -26.26859 -24.74191 -24.26052 -23.78388 -22.35307 -21.98918 -21.20715 -20.63361 -18.61104 -17.86350 -17.59535 -17.39287 -17.16059 -16.45540 -16.13048 -16.06749 -15.78957 -15.42831 -15.07345 -14.86234 -14.71296 -14.59372 -14.42977 -14.26482 -14.04957 -13.87325 -13.57170 -13.56875 -13.35005 -12.97472 -12.91079 -12.82145 -12.65694 -12.55540 -12.30953 -12.16665 -12.03488 -11.83103 -11.78896 -11.53033 -11.14505 -11.08566 -10.76421 -10.66082 -10.50237 -10.20905 -9.78066 -9.67530 -8.53892 -7.82176 -5.28022 0.15344 0.44081 1.41354 1.45132 1.51008 1.82603 2.42520 2.50721 2.93588 3.32534 3.33754 3.59602 3.77673 3.85868 4.01264 4.03092 4.05374 4.14028 4.22651 4.28163 4.35160 4.44036 4.47126 4.50282 4.52506 4.57141 4.65926 4.67278 4.77786 4.79941 4.88225 4.96903 5.00592 5.05594 5.07663 5.15377 5.20787 5.21953 5.28802 5.36800 5.39682 5.43095 5.47231 5.64793 5.69968 5.78144 5.83902 5.85519 6.46070 6.80596 7.17844 7.21709 7.46158 7.90426 8.43349 9.22240 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.003119 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.172228 B = 8975.548571 C =10097.502875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C -0.137 4.137 4 C -0.077 4.077 5 C -0.162 4.162 6 C 0.115 3.885 7 C -0.091 4.091 8 C 0.512 3.488 9 O -0.583 6.583 10 N -0.697 5.697 11 C 0.143 3.857 12 C 0.161 3.839 13 H 0.036 0.964 14 C -0.123 4.123 15 C -0.102 4.102 16 C -0.136 4.136 17 C 0.178 3.822 18 N -0.600 5.600 19 C -0.234 4.234 20 H 0.057 0.943 21 C -0.028 4.028 22 N -0.923 5.923 23 Si 0.934 3.066 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.294 1.294 27 N -0.501 5.501 28 C 0.079 3.921 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.168 0.832 35 H 0.164 0.836 36 H 0.101 0.899 37 H 0.141 0.859 38 H 0.412 0.588 39 H 0.069 0.931 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.043 0.957 47 H 0.004 0.996 48 H 0.049 0.951 49 H 0.248 0.752 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.384 -10.580 -9.508 17.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.139 4.139 4 C -0.102 4.102 5 C -0.181 4.181 6 C -0.023 4.023 7 C -0.131 4.131 8 C 0.298 3.702 9 O -0.464 6.464 10 N -0.347 5.347 11 C 0.019 3.981 12 C 0.055 3.945 13 H 0.054 0.946 14 C -0.163 4.163 15 C -0.139 4.139 16 C -0.175 4.175 17 C 0.052 3.948 18 N -0.325 5.325 19 C -0.365 4.365 20 H 0.075 0.925 21 C -0.224 4.224 22 N -0.569 5.569 23 Si 0.765 3.235 24 H -0.208 1.208 25 H -0.218 1.218 26 H -0.221 1.221 27 N -0.210 5.210 28 C -0.078 4.078 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.186 0.814 35 H 0.181 0.819 36 H 0.119 0.881 37 H 0.159 0.841 38 H 0.248 0.752 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.022 0.978 48 H 0.067 0.933 49 H 0.058 0.942 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.749 -10.479 -8.383 16.587 hybrid contribution 1.267 -0.691 0.101 1.447 sum -8.482 -11.170 -8.281 16.288 Atomic orbital electron populations 1.21745 0.94303 1.02653 1.01613 1.20514 0.96304 0.89998 1.04367 1.21233 0.99889 0.99110 0.93658 1.21831 0.95372 0.93770 0.99245 1.22236 1.00645 0.96860 0.98404 1.20790 0.96776 0.95141 0.89568 1.20650 0.99047 0.90187 1.03194 1.20638 0.86093 0.82327 0.81101 1.90629 1.31024 1.72399 1.52312 1.45987 1.28180 1.08948 1.51618 1.21166 0.92132 0.90613 0.94228 1.20871 0.86117 0.92452 0.95029 0.94624 1.21904 0.98334 0.96104 0.99913 1.21343 0.96077 0.96181 1.00337 1.22057 0.97202 0.99396 0.98856 1.20586 0.94450 0.84524 0.95221 1.44236 1.15927 1.02087 1.70240 1.19134 0.88679 0.90365 1.38307 0.92499 1.25395 0.97802 0.98834 1.00398 1.70091 1.05892 1.34471 1.46418 0.85869 0.77836 0.81171 0.78648 1.20826 1.21752 1.22081 1.67358 1.11532 1.09319 1.32741 1.22889 0.96066 0.89939 0.98951 0.92714 0.90426 0.93952 0.88844 0.90113 0.81419 0.81851 0.88059 0.84080 0.75156 0.91283 0.94550 0.90005 0.93173 0.92195 0.90800 0.91630 0.93858 0.97822 0.93298 0.94206 0.82743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.89 71.98 0.71 -1.31 16 2 C -0.07 -1.05 6.09 29.85 0.18 -0.87 16 3 C -0.14 -2.99 5.15 -19.77 -0.10 -3.09 16 4 C -0.08 -1.51 9.86 22.47 0.22 -1.29 16 5 C -0.16 -3.79 9.71 22.36 0.22 -3.58 16 6 C 0.11 3.70 5.76 42.55 0.25 3.94 16 7 C -0.09 -2.90 6.10 29.10 0.18 -2.72 16 8 C 0.51 20.24 7.76 87.66 0.68 20.92 16 9 O -0.58 -27.02 15.33 -3.03 -0.05 -27.06 16 10 N -0.70 -27.21 3.85 -463.05 -1.78 -28.99 16 11 C 0.14 5.54 4.43 86.38 0.38 5.92 16 12 C 0.16 6.14 3.00 44.97 0.13 6.28 16 13 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 14 C -0.12 -3.93 5.37 30.67 0.16 -3.76 16 15 C -0.10 -3.07 5.88 30.62 0.18 -2.89 16 16 C -0.14 -4.90 6.08 30.67 0.19 -4.71 16 17 C 0.18 8.09 5.26 86.36 0.45 8.54 16 18 N -0.60 -27.71 2.98 -675.19 -2.01 -29.72 16 19 C -0.23 -12.01 7.00 84.03 0.59 -11.42 16 20 H 0.06 3.08 5.85 -2.91 -0.02 3.06 16 21 C -0.03 -1.47 4.97 84.86 0.42 -1.05 16 22 N -0.92 -51.05 11.23 21.65 0.24 -50.81 16 23 Si 0.93 45.10 29.58 68.60 2.03 47.13 16 24 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 27 N -0.50 -18.47 9.22 -183.90 -1.70 -20.16 16 28 C 0.08 2.31 10.86 84.67 0.92 3.23 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.96 8.09 -2.39 -0.02 0.94 16 33 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 34 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.16 2.67 7.95 -2.91 -0.02 2.65 16 36 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 37 H 0.14 3.26 7.87 -2.38 -0.02 3.24 16 38 H 0.41 16.41 7.43 -92.71 -0.69 15.73 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.04 1.61 7.40 -2.38 -0.02 1.59 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.05 2.56 6.20 -2.39 -0.01 2.55 16 49 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 50 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -69.99 395.86 2.73 -67.26 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.23 Total: 30.21 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.77 Total: 12.14 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -5.25 Total: -129.69 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.06 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.99 2.73 -67.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266856413.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.489 kcal (2) G-P(sol) polarization free energy of solvation -69.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds