Wall clock time and date at job start Sat Apr 11 2020 02:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36931 * 119.99818 * 2 1 4 4 H 1.08001 * 119.99851 * 202.59599 * 3 2 1 5 5 C 1.38816 * 120.00277 * 22.59774 * 3 2 1 6 6 N 1.31617 * 119.99934 * 11.88432 * 5 3 2 7 7 Si 1.86803 * 119.99913 * 191.88440 * 5 3 2 8 8 H 1.48495 * 109.47294 * 89.99943 * 7 5 3 9 9 H 1.48500 * 109.46833 * 209.99866 * 7 5 3 10 10 H 1.48496 * 109.47035 * 329.99544 * 7 5 3 11 11 C 1.46500 * 120.00049 * 179.97438 * 2 1 3 12 12 C 1.53008 * 109.46923 * 89.99911 * 11 2 1 13 13 H 1.09003 * 110.88408 * 302.57695 * 12 11 2 14 14 C 1.55157 * 111.00038 * 66.45345 * 12 11 2 15 15 C 1.54322 * 102.94331 * 153.57573 * 14 12 11 16 16 N 1.47023 * 107.26857 * 337.80882 * 15 14 12 17 17 C 1.34780 * 125.65230 * 178.91726 * 16 15 14 18 18 O 1.21279 * 120.00517 * 175.42120 * 17 16 15 19 19 C 1.50706 * 119.99511 * 355.42153 * 17 16 15 20 20 C 1.53000 * 109.47156 * 62.51886 * 19 17 16 21 21 C 1.53001 * 109.47101 * 182.52119 * 19 17 16 22 22 C 1.50703 * 109.47102 * 302.52095 * 19 17 16 23 23 C 1.38666 * 120.41952 * 172.82395 * 22 19 17 24 24 C 1.38632 * 118.42370 * 179.97438 * 23 22 19 25 25 C 1.38229 * 119.15763 * 0.02562 * 24 23 22 26 26 N 1.31851 * 120.76413 * 359.97438 * 25 24 23 27 27 C 1.31890 * 121.72784 * 359.70949 * 26 25 24 28 28 C 1.47429 * 108.70533 * 358.94076 * 16 15 14 29 29 H 1.09004 * 109.47059 * 269.04472 * 1 2 3 30 30 H 1.09002 * 109.47053 * 29.04147 * 1 2 3 31 31 H 1.08999 * 109.47341 * 149.04417 * 1 2 3 32 32 H 0.96994 * 120.00027 * 180.02562 * 6 5 3 33 33 H 1.08990 * 109.47267 * 209.99905 * 11 2 1 34 34 H 1.08999 * 109.46964 * 330.00722 * 11 2 1 35 35 H 1.08998 * 110.72117 * 271.93928 * 14 12 11 36 36 H 1.09000 * 110.72101 * 35.03430 * 14 12 11 37 37 H 1.08993 * 109.88287 * 97.22137 * 15 14 12 38 38 H 1.08992 * 109.88501 * 218.24149 * 15 14 12 39 39 H 1.09003 * 109.47018 * 51.84160 * 20 19 17 40 40 H 1.09001 * 109.46905 * 171.83837 * 20 19 17 41 41 H 1.08995 * 109.47287 * 291.83971 * 20 19 17 42 42 H 1.09001 * 109.46866 * 64.08469 * 21 19 17 43 43 H 1.09001 * 109.47058 * 184.08076 * 21 19 17 44 44 H 1.08997 * 109.46730 * 304.08584 * 21 19 17 45 45 H 1.08006 * 120.78826 * 359.97438 * 23 22 19 46 46 H 1.08002 * 120.41903 * 179.97438 * 24 23 22 47 47 H 1.08001 * 119.61639 * 180.02562 * 25 24 23 48 48 H 1.07989 * 119.61882 * 180.30531 * 27 26 25 49 49 H 1.09004 * 110.36294 * 265.28967 * 28 16 15 50 50 H 1.09000 * 110.36563 * 142.96433 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1675 1.2218 -0.3594 5 6 1.5355 2.3419 0.4619 6 7 0.3936 2.2658 1.1120 7 14 2.3298 4.0057 0.1610 8 1 1.8443 4.5601 -1.1282 9 1 1.9712 4.9322 1.2647 10 1 3.8054 3.8473 0.1074 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4418 13 1 1.5156 -1.8048 -1.9909 14 6 3.4224 -0.7354 -2.1594 15 6 4.0765 -1.6274 -3.2355 16 7 3.9384 -3.0216 -2.7897 17 6 4.3644 -4.1079 -3.4642 18 8 4.2719 -5.2082 -2.9625 19 6 4.9559 -3.9553 -4.8419 20 6 6.2275 -3.1084 -4.7601 21 6 5.2979 -5.3358 -5.4059 22 6 3.9579 -3.2770 -5.7447 23 6 4.3201 -2.8892 -7.0258 24 6 3.3690 -2.2690 -7.8212 25 6 2.1004 -2.0588 -7.3142 26 7 1.7912 -2.4410 -6.0908 27 6 2.6684 -3.0392 -5.3084 28 6 3.2561 -3.0347 -1.4828 29 1 -0.3633 -0.0171 1.0276 30 1 -0.3633 0.8985 -0.4989 31 1 -0.3634 -0.8813 -0.5286 32 1 -0.0357 3.0735 1.4344 33 1 3.1499 -1.1382 0.5143 34 1 1.6084 -2.0281 0.5146 35 1 2.8727 0.0851 -2.6206 36 1 4.1702 -0.3540 -1.4641 37 1 3.5673 -1.4912 -4.1895 38 1 5.1309 -1.3715 -3.3383 39 1 6.8901 -3.5205 -3.9989 40 1 6.7331 -3.1180 -5.7257 41 1 5.9653 -2.0836 -4.4974 42 1 4.3823 -5.9137 -5.5322 43 1 5.7917 -5.2219 -6.3709 44 1 5.9632 -5.8553 -4.7163 45 1 5.3195 -3.0661 -7.3952 46 1 3.6165 -1.9533 -8.8240 47 1 1.3536 -1.5767 -7.9276 48 1 2.3771 -3.3424 -4.3138 49 1 3.9863 -3.0605 -0.6740 50 1 2.5830 -3.8893 -1.4149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267586708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:11 Heat of formation + Delta-G solvation = 35.120786 kcal Electronic energy + Delta-G solvation = -29908.137282 eV Core-core repulsion = 26129.495645 eV Total energy + Delta-G solvation = -3778.641636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.41435 -39.57600 -37.82786 -35.78654 -35.35583 -32.49716 -32.01185 -30.54632 -30.41686 -29.16827 -27.49866 -26.22053 -25.70458 -24.49248 -23.60174 -23.23726 -21.46287 -21.11466 -19.65566 -18.89116 -17.89604 -16.90217 -16.82664 -16.40173 -15.88602 -15.57476 -14.94066 -14.86065 -14.49176 -14.29718 -13.93551 -13.50535 -13.41156 -13.36715 -13.24143 -13.12748 -12.89368 -12.69002 -12.54805 -12.46241 -12.15177 -12.05664 -11.82377 -11.51238 -11.45594 -11.19573 -11.04238 -10.82469 -10.63474 -10.38013 -10.29117 -10.11346 -9.99966 -9.81635 -9.78612 -9.76450 -9.54763 -9.11317 -8.55307 -8.49174 -6.72193 -5.72006 -3.16629 0.86738 1.06173 2.52533 2.96725 3.37353 3.43296 3.45079 3.58851 4.12129 4.17105 4.46225 4.48967 4.61771 4.68868 4.71202 4.76010 4.91854 4.94077 5.04976 5.16320 5.27473 5.31098 5.39553 5.43538 5.46893 5.50027 5.54182 5.58464 5.66746 5.76773 5.83847 5.88140 5.91137 5.95819 5.98079 6.00540 6.16028 6.26984 6.34238 6.46686 6.54476 6.57528 6.71846 6.82920 6.94535 7.43631 7.53896 7.72840 7.81432 7.82940 8.10418 8.42035 9.25619 9.89334 10.38900 11.34347 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.003437 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.437119 B = 8145.658990 C = 8797.263305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.599 5.599 3 C -0.250 4.250 4 H 0.070 0.930 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.901 3.099 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.162 3.838 12 C -0.116 4.116 13 H 0.076 0.924 14 C -0.109 4.109 15 C 0.085 3.915 16 N -0.611 5.611 17 C 0.535 3.465 18 O -0.538 6.538 19 C -0.033 4.033 20 C -0.148 4.148 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.065 4.065 24 C -0.174 4.174 25 C 0.097 3.903 26 N -0.476 5.476 27 C 0.110 3.890 28 C 0.108 3.892 29 H 0.020 0.980 30 H 0.053 0.947 31 H -0.006 1.006 32 H 0.252 0.748 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.156 0.844 48 H 0.157 0.843 49 H 0.068 0.932 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.009 -10.927 -17.308 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.321 5.321 3 C -0.380 4.380 4 H 0.088 0.912 5 C -0.198 4.198 6 N -0.554 5.554 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.034 3.966 12 C -0.139 4.139 13 H 0.095 0.905 14 C -0.147 4.147 15 C -0.038 4.038 16 N -0.344 5.344 17 C 0.323 3.677 18 O -0.415 6.415 19 C -0.036 4.036 20 C -0.205 4.205 21 C -0.180 4.180 22 C -0.131 4.131 23 C -0.091 4.091 24 C -0.194 4.194 25 C -0.060 4.060 26 N -0.184 5.184 27 C -0.047 4.047 28 C -0.014 4.014 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.012 0.988 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.173 0.827 48 H 0.174 0.826 49 H 0.087 0.913 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.011 -11.271 -16.665 22.044 hybrid contribution 1.192 1.001 -0.534 1.646 sum 10.203 -10.270 -17.199 22.481 Atomic orbital electron populations 1.20775 0.82631 0.96548 0.98167 1.43846 1.01800 1.00518 1.85958 1.19212 0.97918 0.85455 1.35418 0.91229 1.25014 0.97814 0.98451 0.98479 1.70071 1.18479 1.27023 1.39792 0.86305 0.78748 0.84434 0.77360 1.21576 1.21817 1.20547 1.20601 0.96324 0.88692 0.90971 1.23168 0.97370 0.91801 1.01514 0.90518 1.22556 0.98497 0.97347 0.96278 1.22625 1.00733 0.80942 0.99459 1.48651 1.57931 1.06317 1.21528 1.19965 0.77913 0.83320 0.86517 1.90700 1.56026 1.25109 1.69709 1.19665 0.94982 0.97834 0.91166 1.22092 0.95018 1.00338 1.03101 1.21679 1.02525 0.93371 1.00442 1.20558 0.95877 1.01017 0.95670 1.21339 0.99826 0.95336 0.92618 1.22125 0.94811 1.01125 1.01305 1.22872 0.95306 0.95846 0.91982 1.67813 1.35868 1.09746 1.04983 1.22994 0.88805 0.93496 0.99402 1.22399 0.95572 0.99388 0.84063 0.96196 0.92863 0.98772 0.93803 0.93249 0.94295 0.89544 0.90568 0.91402 0.91316 0.91424 0.91195 0.90790 0.91878 0.91885 0.91075 0.84763 0.84677 0.82699 0.82614 0.91332 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 8.98 59.85 0.54 4.53 16 2 N -0.60 -14.42 2.87 -181.11 -0.52 -14.94 16 3 C -0.25 -6.52 8.99 -15.06 -0.14 -6.66 16 4 H 0.07 1.74 6.68 -52.49 -0.35 1.39 16 5 C 0.00 0.01 5.08 -17.43 -0.09 -0.08 16 6 N -0.91 -26.20 10.66 55.49 0.59 -25.61 16 7 Si 0.90 21.39 29.57 -169.99 -5.03 16.37 16 8 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 11 C 0.16 3.15 5.21 -4.04 -0.02 3.13 16 12 C -0.12 -1.91 3.29 -88.47 -0.29 -2.20 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 14 C -0.11 -1.70 5.14 -24.90 -0.13 -1.83 16 15 C 0.08 1.10 5.06 -3.06 -0.02 1.08 16 16 N -0.61 -8.40 2.19 -170.52 -0.37 -8.77 16 17 C 0.54 7.46 5.33 -10.98 -0.06 7.40 16 18 O -0.54 -9.18 16.21 5.56 0.09 -9.09 16 19 C -0.03 -0.34 0.60 -156.81 -0.09 -0.44 16 20 C -0.15 -1.26 7.75 37.16 0.29 -0.97 16 21 C -0.12 -1.18 7.66 37.16 0.28 -0.89 16 22 C -0.13 -1.38 3.72 -104.48 -0.39 -1.77 16 23 C -0.07 -0.56 9.07 -39.28 -0.36 -0.91 16 24 C -0.17 -1.43 10.11 -39.44 -0.40 -1.83 16 25 C 0.10 0.99 11.18 -17.55 -0.20 0.80 16 26 N -0.48 -6.41 10.36 -13.25 -0.14 -6.55 16 27 C 0.11 1.44 7.57 -17.55 -0.13 1.31 16 28 C 0.11 1.59 6.36 -2.53 -0.02 1.57 16 29 H 0.02 0.52 7.70 -51.93 -0.40 0.12 16 30 H 0.05 1.41 6.86 -51.93 -0.36 1.06 16 31 H -0.01 -0.14 8.08 -51.93 -0.42 -0.55 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.05 0.96 8.00 -51.93 -0.42 0.54 16 34 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 35 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.24 7.38 -51.93 -0.38 0.85 16 37 H 0.07 0.90 4.83 -51.93 -0.25 0.65 16 38 H 0.07 0.79 5.80 -51.93 -0.30 0.48 16 39 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 40 H 0.07 0.44 7.41 -51.93 -0.38 0.05 16 41 H 0.07 0.65 4.89 -51.93 -0.25 0.40 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.45 8.03 -51.93 -0.42 0.03 16 44 H 0.07 0.71 7.95 -51.93 -0.41 0.30 16 45 H 0.13 0.79 7.39 -52.48 -0.39 0.41 16 46 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 47 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 48 H 0.16 2.29 5.66 -52.49 -0.30 1.99 16 49 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 50 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 LS Contribution 382.15 15.07 5.76 5.76 Total: -1.00 -31.43 382.15 -8.79 -40.21 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.96 Total: 0.37 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.21 Total: 2.25 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.44 Total: -55.87 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.43 -8.79 -40.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267586708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.334 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds