Wall clock time and date at job start Sat Apr 11 2020 02:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50693 * 109.47755 * 2 1 4 4 C 1.38599 * 119.55399 * 125.02010 * 3 2 1 5 5 C 1.38585 * 119.35761 * 179.97438 * 4 3 2 6 6 C 1.38635 * 118.48300 * 359.73265 * 5 4 3 7 7 C 1.39263 * 119.06136 * 0.53166 * 6 5 4 8 8 C 1.48173 * 119.72355 * 179.72812 * 7 6 5 9 9 O 1.21518 * 119.99717 * 11.70469 * 8 7 6 10 10 N 1.34773 * 120.00113 * 191.69765 * 8 7 6 11 11 C 1.46927 * 120.63148 * 7.46881 * 10 8 7 12 12 C 1.53188 * 108.77588 * 126.36929 * 11 10 8 13 13 C 1.53043 * 109.31324 * 54.63549 * 12 11 10 14 14 C 1.53043 * 109.53643 * 298.63407 * 13 12 11 15 15 C 1.46923 * 120.62987 * 187.44688 * 10 8 7 16 16 H 1.09002 * 109.59048 * 113.84694 * 15 10 8 17 17 C 1.53000 * 109.70509 * 353.48442 * 15 10 8 18 18 H 1.09007 * 109.46860 * 53.29891 * 17 15 10 19 19 C 1.53008 * 109.47250 * 173.29170 * 17 15 10 20 20 N 1.46497 * 109.47214 * 293.29457 * 17 15 10 21 21 C 1.36939 * 119.99755 * 155.00060 * 20 17 15 22 22 H 1.07999 * 120.00097 * 359.97438 * 21 20 17 23 23 C 1.38818 * 120.00019 * 180.02562 * 21 20 17 24 24 N 1.31615 * 119.99842 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99447 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47198 * 90.00910 * 25 23 21 27 27 H 1.48506 * 109.46873 * 210.00228 * 25 23 21 28 28 H 1.48492 * 109.47669 * 330.00141 * 25 23 21 29 29 N 1.31497 * 119.54707 * 305.00541 * 3 2 1 30 30 H 1.08997 * 109.47509 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46896 * 299.99850 * 1 2 3 32 32 H 1.09005 * 109.47101 * 59.99483 * 1 2 3 33 33 H 1.09003 * 109.46896 * 240.00150 * 2 1 3 34 34 H 1.08997 * 109.47342 * 120.00727 * 2 1 3 35 35 H 1.08002 * 120.31864 * 0.02562 * 4 3 2 36 36 H 1.07994 * 120.75705 * 179.97438 * 5 4 3 37 37 H 1.08004 * 120.46672 * 180.27869 * 6 5 4 38 38 H 1.09007 * 109.58581 * 246.15806 * 11 10 8 39 39 H 1.08993 * 109.58869 * 6.57862 * 11 10 8 40 40 H 1.09003 * 109.50064 * 174.58322 * 12 11 10 41 41 H 1.09000 * 109.49612 * 294.64949 * 12 11 10 42 42 H 1.09000 * 109.46145 * 178.61711 * 13 12 11 43 43 H 1.08998 * 109.45976 * 58.65765 * 13 12 11 44 44 H 1.08995 * 109.49944 * 301.41366 * 14 13 12 45 45 H 1.08998 * 109.49472 * 181.31725 * 14 13 12 46 46 H 1.08994 * 109.46920 * 186.43322 * 19 17 15 47 47 H 1.08999 * 109.47007 * 306.43054 * 19 17 15 48 48 H 1.08999 * 109.46397 * 66.42996 * 19 17 15 49 49 H 0.96993 * 120.00502 * 334.99855 * 20 17 15 50 50 H 0.97001 * 119.99603 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9126 1.8345 0.9874 5 6 3.3726 3.1418 0.9832 6 6 2.9359 3.9931 -0.0202 7 6 2.0465 3.5107 -0.9771 8 6 1.5657 4.4095 -2.0524 9 8 2.0997 5.4869 -2.2278 10 7 0.5362 4.0322 -2.8360 11 6 -0.2243 2.8113 -2.5365 12 6 -1.7127 3.1648 -2.4561 13 6 -2.1364 3.8681 -3.7476 14 6 -1.3400 5.1650 -3.9090 15 6 0.1527 4.8342 -4.0058 16 1 0.3426 4.2661 -4.9165 17 6 0.9647 6.1306 -4.0311 18 1 2.0272 5.8951 -3.9685 19 6 0.6850 6.8823 -5.3342 20 7 0.5822 6.9688 -2.8921 21 6 1.4630 7.8920 -2.3951 22 1 2.4398 8.0020 -2.8426 23 6 1.1008 8.6859 -1.3155 24 7 1.9475 9.5729 -0.8375 25 14 -0.5885 8.4951 -0.5412 26 1 -0.5244 7.4825 0.5432 27 1 -1.0243 9.7978 0.0231 28 1 -1.5595 8.0535 -1.5741 29 7 1.6299 2.2509 -0.9370 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.2376 1.1446 1.7521 36 1 4.0585 3.4884 1.7419 37 1 3.2776 5.0170 -0.0567 38 1 -0.0650 2.0782 -3.3273 39 1 0.1056 2.4001 -1.5825 40 1 -2.2969 2.2532 -2.3299 41 1 -1.8840 3.8270 -1.6075 42 1 -3.2008 4.0988 -3.7031 43 1 -1.9420 3.2143 -4.5977 44 1 -1.5147 5.8089 -3.0471 45 1 -1.6588 5.6771 -4.8168 46 1 1.3466 7.7456 -5.4048 47 1 0.8614 6.2192 -6.1811 48 1 -0.3521 7.2174 -5.3448 49 1 -0.2949 6.8698 -2.4900 50 1 1.6945 10.1273 -0.0829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566528521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:10 Heat of formation + Delta-G solvation = 63.769314 kcal Electronic energy + Delta-G solvation = -30972.851281 eV Core-core repulsion = 27195.451938 eV Total energy + Delta-G solvation = -3777.399343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.84325 -39.53223 -36.92037 -35.33064 -34.23077 -33.01421 -32.15879 -31.76140 -29.98403 -29.80099 -28.39915 -25.74557 -24.57316 -23.85053 -23.68599 -22.72882 -21.49109 -20.80837 -19.95135 -18.89197 -17.45436 -16.73805 -16.46857 -15.86327 -15.36972 -15.18104 -14.88535 -14.56218 -14.40930 -14.32962 -13.84921 -13.69907 -13.50381 -13.40466 -13.26804 -12.87130 -12.60585 -12.38574 -12.25481 -12.07590 -12.01964 -11.90336 -11.56269 -11.47550 -11.28264 -11.21415 -10.86104 -10.75092 -10.65124 -10.55758 -10.46574 -10.11340 -9.86689 -9.85350 -9.26056 -9.00875 -8.94643 -8.64374 -8.34367 -7.90129 -6.84725 -5.46989 -2.74859 0.83698 1.22504 3.19024 3.37702 3.48556 3.51722 3.56868 4.01679 4.13755 4.51045 4.77344 4.82384 4.93923 5.02267 5.06411 5.09293 5.12349 5.17375 5.20849 5.30444 5.35808 5.45324 5.59002 5.63362 5.64613 5.68671 5.75643 5.80118 5.82966 5.85346 5.97506 6.04851 6.07647 6.13856 6.15643 6.21447 6.23817 6.29629 6.39332 6.41061 6.47157 6.51246 6.71996 6.76660 7.02336 7.04905 7.38076 7.77203 8.01102 8.32678 8.70594 8.90006 9.51791 10.24283 10.46015 11.73769 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.005546 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.052027 B = 5047.070427 C = 6259.512727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.070 4.070 3 C 0.113 3.887 4 C -0.159 4.159 5 C -0.077 4.077 6 C -0.115 4.115 7 C 0.097 3.903 8 C 0.536 3.464 9 O -0.432 6.432 10 N -0.595 5.595 11 C 0.080 3.920 12 C -0.138 4.138 13 C -0.118 4.118 14 C -0.133 4.133 15 C 0.142 3.858 16 H 0.067 0.933 17 C 0.177 3.823 18 H 0.086 0.914 19 C -0.168 4.168 20 N -0.729 5.729 21 C -0.175 4.175 22 H 0.088 0.912 23 C -0.012 4.012 24 N -0.948 5.948 25 Si 0.872 3.128 26 H -0.293 1.293 27 H -0.296 1.296 28 H -0.283 1.283 29 N -0.451 5.451 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.154 0.846 38 H 0.054 0.946 39 H 0.141 0.859 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.035 0.965 48 H 0.044 0.956 49 H 0.354 0.646 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.258 -22.325 -0.356 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.026 4.026 4 C -0.179 4.179 5 C -0.103 4.103 6 C -0.135 4.135 7 C -0.041 4.041 8 C 0.320 3.680 9 O -0.300 6.300 10 N -0.331 5.331 11 C -0.042 4.042 12 C -0.177 4.177 13 C -0.155 4.155 14 C -0.172 4.172 15 C 0.038 3.962 16 H 0.085 0.915 17 C 0.067 3.933 18 H 0.104 0.896 19 C -0.229 4.229 20 N -0.372 5.372 21 C -0.306 4.306 22 H 0.106 0.894 23 C -0.204 4.204 24 N -0.600 5.600 25 Si 0.704 3.296 26 H -0.221 1.221 27 H -0.223 1.223 28 H -0.210 1.210 29 N -0.165 5.165 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.172 0.828 38 H 0.072 0.928 39 H 0.158 0.842 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.054 0.946 48 H 0.063 0.937 49 H 0.189 0.811 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.308 -21.823 -1.059 22.098 hybrid contribution -0.905 0.232 1.447 1.723 sum -4.213 -21.591 0.389 22.002 Atomic orbital electron populations 1.21739 0.94224 1.01758 1.02877 1.20447 0.96947 0.90317 1.03034 1.21407 0.93917 0.96077 0.91177 1.22084 0.98956 0.96938 0.99950 1.21636 0.97982 0.93119 0.97585 1.22280 0.95697 1.02332 0.93196 1.21660 0.95498 0.90665 0.96265 1.18043 0.82406 0.85540 0.82007 1.91212 1.55714 1.17279 1.65820 1.47666 1.31884 1.25702 1.27812 1.22775 0.89796 0.86140 1.05531 1.21990 0.97125 1.00288 0.98261 1.21525 0.99283 0.97057 0.97678 1.21996 0.95037 0.97299 1.02854 1.21657 0.94450 0.93210 0.86840 0.91466 1.20631 0.98584 0.87060 0.87009 0.89644 1.22534 1.01338 1.00869 0.98146 1.42805 1.15335 1.43440 1.35654 1.18959 0.96086 1.06697 1.08858 0.89447 1.24500 0.96756 0.99937 0.99213 1.69676 1.34667 1.27181 1.28501 0.86722 0.86885 0.76511 0.79444 1.22064 1.22298 1.20983 1.67425 1.22090 1.03346 1.23593 0.92335 0.92829 0.91365 0.90009 0.90468 0.84851 0.84273 0.82794 0.92765 0.84229 0.91597 0.92126 0.92435 0.92191 0.91242 0.90890 0.92412 0.94573 0.93661 0.81135 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.77 37.15 0.36 -0.82 16 2 C -0.07 -0.56 6.33 -27.89 -0.18 -0.74 16 3 C 0.11 1.30 6.18 -82.61 -0.51 0.79 16 4 C -0.16 -1.69 9.72 -39.32 -0.38 -2.07 16 5 C -0.08 -0.95 10.17 -39.31 -0.40 -1.35 16 6 C -0.11 -1.84 9.63 -39.05 -0.38 -2.22 16 7 C 0.10 1.64 6.54 -83.01 -0.54 1.09 16 8 C 0.54 10.47 7.38 -12.18 -0.09 10.38 16 9 O -0.43 -10.09 9.10 5.35 0.05 -10.04 16 10 N -0.60 -10.15 2.97 -166.21 -0.49 -10.64 16 11 C 0.08 1.11 5.84 -3.71 -0.02 1.09 16 12 C -0.14 -1.77 6.08 -26.61 -0.16 -1.94 16 13 C -0.12 -1.49 5.88 -26.69 -0.16 -1.65 16 14 C -0.13 -2.09 4.88 -26.61 -0.13 -2.22 16 15 C 0.14 2.39 2.71 -67.60 -0.18 2.21 16 16 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 17 C 0.18 3.60 1.88 -67.93 -0.13 3.48 16 18 H 0.09 1.94 5.94 -52.03 -0.31 1.63 16 19 C -0.17 -3.09 9.15 37.16 0.34 -2.75 16 20 N -0.73 -17.87 3.43 -53.42 -0.18 -18.05 16 21 C -0.18 -5.11 8.44 -15.06 -0.13 -5.24 16 22 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.95 -31.14 13.97 55.49 0.78 -30.36 16 25 Si 0.87 23.64 27.73 -169.99 -4.71 18.92 16 26 H -0.29 -8.00 7.11 56.52 0.40 -7.60 16 27 H -0.30 -8.15 7.11 56.52 0.40 -7.74 16 28 H -0.28 -7.28 6.52 56.52 0.37 -6.92 16 29 N -0.45 -6.35 5.79 -6.06 -0.04 -6.38 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.62 6.74 -51.93 -0.35 0.27 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.47 7.87 -51.93 -0.41 0.06 16 35 H 0.13 0.98 7.95 -52.49 -0.42 0.57 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.15 2.78 7.69 -52.48 -0.40 2.37 16 38 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 39 H 0.14 1.95 2.87 -79.67 -0.23 1.72 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 1.31 6.01 -51.93 -0.31 0.99 16 45 H 0.07 1.07 7.07 -51.93 -0.37 0.70 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.04 0.55 8.13 -51.93 -0.42 0.13 16 48 H 0.04 0.81 7.09 -51.93 -0.37 0.44 16 49 H 0.35 8.78 3.43 -40.82 -0.14 8.64 16 50 H 0.25 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -34.42 376.43 -9.68 -44.10 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -7.97 Total: 9.18 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.78 Total: -2.41 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: 0.06 Total: -65.43 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.05 Total: -10.04 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.71 Total: 18.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.42 -9.68 -44.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566528521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.870 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds