Wall clock time and date at job start Sat Apr 11 2020 02:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50696 * 109.46715 * 2 1 4 4 C 1.38675 * 120.42180 * 270.01501 * 3 2 1 5 5 C 1.38634 * 118.41952 * 179.71227 * 4 3 2 6 6 C 1.38229 * 119.15879 * 0.51300 * 5 4 3 7 7 C 1.50699 * 119.61506 * 179.75223 * 6 5 4 8 8 C 1.50696 * 109.47245 * 124.72952 * 7 6 5 9 9 O 1.21282 * 119.99846 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99858 * 180.27791 * 8 7 6 11 11 C 1.46500 * 119.99572 * 179.72582 * 10 8 7 12 12 C 1.53003 * 109.46807 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.46941 * 180.02562 * 12 11 10 14 14 H 1.09003 * 110.64688 * 54.29798 * 13 12 11 15 15 C 1.55156 * 110.71912 * 177.44546 * 13 12 11 16 16 C 1.55118 * 101.48617 * 153.73472 * 15 13 12 17 17 N 1.47425 * 104.94512 * 323.21896 * 16 15 13 18 18 C 1.36938 * 125.65158 * 203.97454 * 17 16 15 19 19 H 1.07998 * 119.99927 * 169.98415 * 18 17 16 20 20 C 1.38810 * 119.99990 * 349.97890 * 18 17 16 21 21 N 1.31621 * 119.99984 * 350.42612 * 20 18 17 22 22 Si 1.86804 * 120.00002 * 170.42474 * 20 18 17 23 23 H 1.48499 * 109.46983 * 94.14045 * 22 20 18 24 24 H 1.48501 * 109.46785 * 214.14338 * 22 20 18 25 25 H 1.48493 * 109.46836 * 334.13886 * 22 20 18 26 26 C 1.47024 * 108.70136 * 24.00487 * 17 16 15 27 27 N 1.31850 * 120.76676 * 359.47806 * 6 5 4 28 28 C 1.31883 * 121.72777 * 0.27770 * 27 6 5 29 29 H 1.09000 * 109.46684 * 59.99736 * 1 2 3 30 30 H 1.09002 * 109.46874 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47203 * 300.00017 * 1 2 3 32 32 H 1.08999 * 109.46960 * 240.00406 * 2 1 3 33 33 H 1.09000 * 109.46684 * 120.00264 * 2 1 3 34 34 H 1.07996 * 120.78806 * 0.02562 * 4 3 2 35 35 H 1.07993 * 120.41438 * 180.28654 * 5 4 3 36 36 H 1.09006 * 109.47061 * 4.72510 * 7 6 5 37 37 H 1.08999 * 109.47189 * 244.73333 * 7 6 5 38 38 H 0.96991 * 120.00041 * 359.72358 * 10 8 7 39 39 H 1.08992 * 109.47187 * 299.99741 * 11 10 8 40 40 H 1.09005 * 109.47285 * 59.99922 * 11 10 8 41 41 H 1.08992 * 109.47360 * 300.00032 * 12 11 10 42 42 H 1.09005 * 109.46938 * 60.00106 * 12 11 10 43 43 H 1.08999 * 110.99977 * 271.93618 * 15 13 12 44 44 H 1.08993 * 111.00449 * 35.78840 * 15 13 12 45 45 H 1.09007 * 110.42399 * 204.29370 * 16 15 13 46 46 H 1.08999 * 110.30604 * 82.08569 * 16 15 13 47 47 H 0.96994 * 119.99863 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.88166 * 239.52466 * 26 17 16 49 49 H 1.08995 * 110.01258 * 118.43339 * 26 17 16 50 50 H 1.07993 * 119.62066 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2660 2.0830 -1.1958 5 6 2.7220 3.3913 -1.1474 6 6 2.9372 3.9844 0.0825 7 6 3.4382 5.4042 0.1471 8 6 2.4960 6.2318 0.9828 9 8 1.5141 5.7192 1.4768 10 7 2.7412 7.5430 1.1760 11 6 1.8220 8.3488 1.9835 12 6 2.3280 9.7914 2.0450 13 6 1.3684 10.6328 2.8887 14 1 1.2240 10.1823 3.8707 15 6 1.8882 12.0885 3.0236 16 6 0.5671 12.8682 3.2537 17 7 -0.4273 12.1913 2.4013 18 6 -1.5747 12.7556 1.9112 19 1 -2.1574 12.2342 1.1664 20 6 -1.9887 13.9979 2.3718 21 7 -1.3912 14.5485 3.4073 22 14 -3.3940 14.8882 1.5220 23 1 -4.6687 14.5795 2.2185 24 1 -3.1492 16.3524 1.5633 25 1 -3.4809 14.4406 0.1089 26 6 0.0167 10.8097 2.1652 27 7 2.7043 3.3241 1.1997 28 6 2.2655 2.0805 1.1917 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0921 1.5928 -2.1423 35 1 2.9101 3.9388 -2.0590 36 1 3.4892 5.8177 -0.8602 37 1 4.4311 5.4191 0.5965 38 1 3.5263 7.9529 0.7806 39 1 0.8301 8.3302 1.5321 40 1 1.7699 7.9391 2.9923 41 1 3.3198 9.8097 2.4966 42 1 2.3804 10.2013 1.0363 43 1 2.5571 12.1867 3.8786 44 1 2.3784 12.4148 2.1065 45 1 0.6816 13.9087 2.9498 46 1 0.2710 12.8101 4.3011 47 1 -1.6808 15.4164 3.7293 48 1 0.1433 10.6386 1.0962 49 1 -0.7142 10.1090 2.5686 50 1 2.0864 1.5716 2.1273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691908148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:49 Heat of formation + Delta-G solvation = 1.647484 kcal Electronic energy + Delta-G solvation = -27019.891861 eV Core-core repulsion = 23239.798713 eV Total energy + Delta-G solvation = -3780.093148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.76618 -39.41807 -37.77208 -35.43587 -34.97618 -33.03822 -32.58044 -31.76090 -30.72359 -29.02736 -28.09422 -26.39042 -24.70561 -24.11517 -23.67858 -22.23986 -21.46952 -20.57715 -20.09892 -19.26176 -17.31946 -16.97710 -16.77239 -16.58297 -15.81840 -15.70603 -15.33169 -14.98675 -14.59810 -14.44942 -14.20386 -14.01204 -13.73528 -13.61951 -13.45663 -13.21064 -12.79769 -12.49507 -12.41371 -12.31909 -12.19369 -11.83185 -11.68177 -11.62576 -11.54857 -11.37595 -11.11618 -10.78260 -10.72907 -10.13585 -10.10257 -10.00608 -9.93530 -9.80295 -9.73062 -9.59510 -9.51444 -9.05573 -8.99327 -8.53253 -6.73589 -5.70108 -3.01898 0.80828 1.06687 2.66591 3.09222 3.42334 3.47736 3.50049 3.60343 3.94767 4.34056 4.40730 4.53848 4.54696 4.63661 4.76906 4.91153 4.94695 4.97095 5.03450 5.09659 5.15029 5.17333 5.32555 5.34215 5.47708 5.50137 5.51493 5.59813 5.64221 5.67873 5.81476 5.82392 5.83016 5.93862 6.00303 6.05455 6.22985 6.26605 6.40894 6.43946 6.48180 6.62293 6.67193 6.81523 7.03027 7.48200 7.56109 7.64309 7.82768 7.83166 8.25085 8.32047 9.25030 9.87169 10.55634 11.43200 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.001787 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.340596 B =15668.656055 C =16542.133088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.076 4.076 5 C -0.163 4.163 6 C 0.138 3.862 7 C -0.092 4.092 8 C 0.515 3.485 9 O -0.521 6.521 10 N -0.732 5.732 11 C 0.119 3.881 12 C -0.115 4.115 13 C -0.097 4.097 14 H 0.073 0.927 15 C -0.140 4.140 16 C 0.173 3.827 17 N -0.604 5.604 18 C -0.227 4.227 19 H 0.075 0.925 20 C -0.009 4.009 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.140 3.860 27 N -0.453 5.453 28 C 0.107 3.893 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.398 0.602 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.025 0.975 47 H 0.252 0.748 48 H 0.022 0.978 49 H 0.020 0.980 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.557 -25.979 -9.056 31.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.141 4.141 4 C -0.102 4.102 5 C -0.183 4.183 6 C -0.001 4.001 7 C -0.133 4.133 8 C 0.300 3.700 9 O -0.396 6.396 10 N -0.385 5.385 11 C -0.004 4.004 12 C -0.153 4.153 13 C -0.116 4.116 14 H 0.091 0.909 15 C -0.179 4.179 16 C 0.048 3.952 17 N -0.330 5.330 18 C -0.355 4.355 19 H 0.093 0.907 20 C -0.206 4.206 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.014 3.986 27 N -0.160 5.160 28 C -0.051 4.051 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.232 0.768 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.040 0.960 49 H 0.038 0.962 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 13.838 -25.732 -7.858 30.255 hybrid contribution -0.598 0.343 -1.366 1.530 sum 13.240 -25.389 -9.223 30.082 Atomic orbital electron populations 1.21770 0.94426 1.01887 1.02540 1.20463 0.96362 0.91792 1.03059 1.20941 1.00865 0.97939 0.94353 1.21404 0.96400 0.94210 0.98137 1.21910 1.01681 0.96089 0.98625 1.20523 0.95909 0.94862 0.88758 1.20605 1.00150 0.90459 1.02069 1.20215 0.86534 0.82032 0.81262 1.90755 1.28618 1.71260 1.48944 1.46047 1.28783 1.09326 1.54327 1.21470 0.93339 0.90188 0.95420 1.21780 0.99247 0.93180 1.01139 1.22081 0.95400 0.95673 0.98494 0.90881 1.23063 0.99582 0.94934 1.00293 1.21419 0.83828 0.96023 0.93976 1.44497 1.22703 1.06544 1.59279 1.19033 0.99279 1.00623 1.16615 0.90720 1.24822 0.99382 0.98711 0.97659 1.69965 1.43736 1.17842 1.25106 0.86135 0.81774 0.79082 0.78982 1.21645 1.21642 1.20648 1.21362 0.92544 0.88293 0.96418 1.67434 1.10186 1.07702 1.30725 1.22627 0.94946 0.90122 0.97425 0.92563 0.92171 0.92278 0.90935 0.90674 0.84965 0.84795 0.87371 0.87109 0.76815 0.91106 0.91572 0.91664 0.91248 0.92313 0.92253 0.91474 0.95703 0.93786 0.96040 0.96240 0.83017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.90 37.16 0.37 -0.53 16 2 C -0.08 -0.45 6.09 -27.88 -0.17 -0.62 16 3 C -0.14 -1.16 5.15 -104.48 -0.54 -1.70 16 4 C -0.08 -0.60 9.86 -39.27 -0.39 -0.98 16 5 C -0.16 -1.39 9.71 -39.44 -0.38 -1.77 16 6 C 0.14 1.48 5.76 -82.59 -0.48 1.00 16 7 C -0.09 -0.78 6.10 -29.04 -0.18 -0.96 16 8 C 0.51 6.44 7.76 -10.98 -0.09 6.35 16 9 O -0.52 -9.10 15.33 5.56 0.09 -9.02 16 10 N -0.73 -7.84 5.56 -60.29 -0.33 -8.18 16 11 C 0.12 1.57 5.54 -4.04 -0.02 1.55 16 12 C -0.12 -1.48 4.72 -26.73 -0.13 -1.60 16 13 C -0.10 -1.65 2.95 -88.78 -0.26 -1.91 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 15 C -0.14 -2.58 6.55 -24.47 -0.16 -2.74 16 16 C 0.17 4.24 5.43 -2.42 -0.01 4.23 16 17 N -0.60 -15.90 3.40 -169.93 -0.58 -16.48 16 18 C -0.23 -6.53 10.24 -15.06 -0.15 -6.68 16 19 H 0.07 2.09 7.85 -52.49 -0.41 1.68 16 20 C -0.01 -0.27 5.40 -17.43 -0.09 -0.37 16 21 N -0.92 -27.55 10.68 55.49 0.59 -26.95 16 22 Si 0.91 22.51 29.56 -169.99 -5.03 17.49 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 C 0.14 2.99 6.11 -3.06 -0.02 2.97 16 27 N -0.45 -5.76 9.22 -9.47 -0.09 -5.85 16 28 C 0.11 1.11 10.86 -17.55 -0.19 0.92 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 33 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.77 7.95 -52.49 -0.42 0.35 16 36 H 0.11 0.57 7.87 -51.93 -0.41 0.16 16 37 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.40 2.90 8.47 -40.82 -0.35 2.55 16 39 H 0.07 1.09 7.59 -51.93 -0.39 0.69 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.88 8.01 -51.93 -0.42 0.47 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 45 H 0.07 1.82 6.94 -51.93 -0.36 1.46 16 46 H 0.02 0.66 8.07 -51.93 -0.42 0.25 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.02 0.45 7.73 -51.93 -0.40 0.05 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 405.60 15.07 6.11 6.11 Total: -1.00 -36.39 405.60 -10.74 -47.13 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.62 Total: -1.41 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -2.89 Total: -2.85 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.41 Total: -57.46 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.39 -10.74 -47.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691908148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.780 kcal (2) G-P(sol) polarization free energy of solvation -36.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds