Wall clock time and date at job start Sat Apr 11 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50696 * 109.46715 * 2 1 4 4 C 1.38675 * 120.42180 * 270.01501 * 3 2 1 5 5 C 1.38634 * 118.41952 * 179.71227 * 4 3 2 6 6 C 1.38229 * 119.15879 * 0.51300 * 5 4 3 7 7 C 1.50699 * 119.61506 * 179.75223 * 6 5 4 8 8 C 1.50696 * 109.47245 * 124.72952 * 7 6 5 9 9 O 1.21282 * 119.99846 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99858 * 180.27791 * 8 7 6 11 11 C 1.46500 * 119.99572 * 179.72582 * 10 8 7 12 12 C 1.53003 * 109.46807 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.46941 * 180.02562 * 12 11 10 14 14 H 1.09003 * 110.64688 * 54.29798 * 13 12 11 15 15 C 1.55156 * 110.71912 * 177.44546 * 13 12 11 16 16 C 1.55118 * 101.48617 * 153.73472 * 15 13 12 17 17 N 1.47425 * 104.94512 * 323.21896 * 16 15 13 18 18 C 1.36938 * 125.65158 * 203.97454 * 17 16 15 19 19 H 1.07998 * 119.99927 * 169.98415 * 18 17 16 20 20 C 1.38810 * 119.99990 * 349.97890 * 18 17 16 21 21 N 1.31621 * 119.99984 * 350.42612 * 20 18 17 22 22 Si 1.86804 * 120.00002 * 170.42474 * 20 18 17 23 23 H 1.48499 * 109.46983 * 94.14045 * 22 20 18 24 24 H 1.48501 * 109.46785 * 214.14338 * 22 20 18 25 25 H 1.48493 * 109.46836 * 334.13886 * 22 20 18 26 26 C 1.47024 * 108.70136 * 24.00487 * 17 16 15 27 27 N 1.31850 * 120.76676 * 359.47806 * 6 5 4 28 28 C 1.31883 * 121.72777 * 0.27770 * 27 6 5 29 29 H 1.09000 * 109.46684 * 59.99736 * 1 2 3 30 30 H 1.09002 * 109.46874 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47203 * 300.00017 * 1 2 3 32 32 H 1.08999 * 109.46960 * 240.00406 * 2 1 3 33 33 H 1.09000 * 109.46684 * 120.00264 * 2 1 3 34 34 H 1.07996 * 120.78806 * 0.02562 * 4 3 2 35 35 H 1.07993 * 120.41438 * 180.28654 * 5 4 3 36 36 H 1.09006 * 109.47061 * 4.72510 * 7 6 5 37 37 H 1.08999 * 109.47189 * 244.73333 * 7 6 5 38 38 H 0.96991 * 120.00041 * 359.72358 * 10 8 7 39 39 H 1.08992 * 109.47187 * 299.99741 * 11 10 8 40 40 H 1.09005 * 109.47285 * 59.99922 * 11 10 8 41 41 H 1.08992 * 109.47360 * 300.00032 * 12 11 10 42 42 H 1.09005 * 109.46938 * 60.00106 * 12 11 10 43 43 H 1.08999 * 110.99977 * 271.93618 * 15 13 12 44 44 H 1.08993 * 111.00449 * 35.78840 * 15 13 12 45 45 H 1.09007 * 110.42399 * 204.29370 * 16 15 13 46 46 H 1.08999 * 110.30604 * 82.08569 * 16 15 13 47 47 H 0.96994 * 119.99863 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.88166 * 239.52466 * 26 17 16 49 49 H 1.08995 * 110.01258 * 118.43339 * 26 17 16 50 50 H 1.07993 * 119.62066 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2660 2.0830 -1.1958 5 6 2.7220 3.3913 -1.1474 6 6 2.9372 3.9844 0.0825 7 6 3.4382 5.4042 0.1471 8 6 2.4960 6.2318 0.9828 9 8 1.5141 5.7192 1.4768 10 7 2.7412 7.5430 1.1760 11 6 1.8220 8.3488 1.9835 12 6 2.3280 9.7914 2.0450 13 6 1.3684 10.6328 2.8887 14 1 1.2240 10.1823 3.8707 15 6 1.8882 12.0885 3.0236 16 6 0.5671 12.8682 3.2537 17 7 -0.4273 12.1913 2.4013 18 6 -1.5747 12.7556 1.9112 19 1 -2.1574 12.2342 1.1664 20 6 -1.9887 13.9979 2.3718 21 7 -1.3912 14.5485 3.4073 22 14 -3.3940 14.8882 1.5220 23 1 -4.6687 14.5795 2.2185 24 1 -3.1492 16.3524 1.5633 25 1 -3.4809 14.4406 0.1089 26 6 0.0167 10.8097 2.1652 27 7 2.7043 3.3241 1.1997 28 6 2.2655 2.0805 1.1917 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0921 1.5928 -2.1423 35 1 2.9101 3.9388 -2.0590 36 1 3.4892 5.8177 -0.8602 37 1 4.4311 5.4191 0.5965 38 1 3.5263 7.9529 0.7806 39 1 0.8301 8.3302 1.5321 40 1 1.7699 7.9391 2.9923 41 1 3.3198 9.8097 2.4966 42 1 2.3804 10.2013 1.0363 43 1 2.5571 12.1867 3.8786 44 1 2.3784 12.4148 2.1065 45 1 0.6816 13.9087 2.9498 46 1 0.2710 12.8101 4.3011 47 1 -1.6808 15.4164 3.7293 48 1 0.1433 10.6386 1.0962 49 1 -0.7142 10.1090 2.5686 50 1 2.0864 1.5716 2.1273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691908148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:48 Heat of formation + Delta-G solvation = -22.074767 kcal Electronic energy + Delta-G solvation = -27020.920535 eV Core-core repulsion = 23239.798713 eV Total energy + Delta-G solvation = -3781.121822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.47187 -40.36613 -39.37379 -36.46620 -35.80127 -34.73511 -33.34612 -32.67698 -32.05607 -30.68748 -29.00667 -27.85267 -26.44753 -24.76814 -24.46637 -23.46092 -22.19909 -21.92440 -21.50165 -20.65413 -18.85639 -18.14257 -17.65299 -17.38684 -17.01870 -16.68509 -16.50749 -16.16348 -16.09413 -15.59631 -15.23036 -14.94709 -14.72471 -14.43631 -14.30411 -14.27667 -13.90695 -13.81043 -13.59078 -13.43462 -13.31181 -13.06581 -12.94284 -12.87364 -12.76520 -12.68227 -12.23187 -12.17959 -11.97773 -11.84707 -11.81308 -11.56747 -11.42430 -11.35696 -10.89214 -10.67762 -10.65320 -10.24091 -10.03015 -9.68335 -8.85997 -7.89667 -5.24122 0.15791 0.43265 1.43733 1.45438 1.55406 1.74727 2.23324 2.48399 2.90903 3.28702 3.32016 3.72686 3.75986 3.78079 3.86417 3.95127 3.97099 4.04692 4.12912 4.17652 4.31845 4.35245 4.40745 4.47484 4.48489 4.56544 4.64607 4.66438 4.70780 4.76009 4.78403 4.89161 4.95344 5.04752 5.04832 5.07235 5.12444 5.19537 5.21596 5.27358 5.34758 5.43762 5.43921 5.50403 5.52340 5.63747 5.76116 5.83786 6.20743 6.66464 7.08088 7.14956 7.38428 7.76592 8.43267 9.22359 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.001787 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.340596 B =15668.656055 C =16542.133088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.075 4.075 3 C -0.139 4.139 4 C -0.082 4.082 5 C -0.163 4.163 6 C 0.109 3.891 7 C -0.084 4.084 8 C 0.509 3.491 9 O -0.580 6.580 10 N -0.717 5.717 11 C 0.125 3.875 12 C -0.097 4.097 13 C -0.085 4.085 14 H 0.073 0.927 15 C -0.121 4.121 16 C 0.173 3.827 17 N -0.628 5.628 18 C -0.247 4.247 19 H 0.075 0.925 20 C -0.066 4.066 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.269 1.269 26 C 0.134 3.866 27 N -0.494 5.494 28 C 0.079 3.921 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.147 0.853 37 H 0.133 0.867 38 H 0.419 0.581 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.033 0.967 46 H -0.008 1.008 47 H 0.249 0.751 48 H 0.029 0.971 49 H 0.004 0.996 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.561 -27.126 -11.473 33.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.141 4.141 4 C -0.108 4.108 5 C -0.183 4.183 6 C -0.029 4.029 7 C -0.123 4.123 8 C 0.296 3.704 9 O -0.458 6.458 10 N -0.370 5.370 11 C 0.001 3.999 12 C -0.135 4.135 13 C -0.105 4.105 14 H 0.092 0.908 15 C -0.159 4.159 16 C 0.048 3.952 17 N -0.354 5.354 18 C -0.376 4.376 19 H 0.093 0.907 20 C -0.259 4.259 21 N -0.597 5.597 22 Si 0.806 3.194 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.193 1.193 26 C 0.009 3.991 27 N -0.203 5.203 28 C -0.078 4.078 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.164 0.836 37 H 0.151 0.849 38 H 0.256 0.744 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.118 0.882 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.051 0.949 46 H 0.010 0.990 47 H 0.058 0.942 48 H 0.047 0.953 49 H 0.022 0.978 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 15.894 -26.891 -10.301 32.892 hybrid contribution -1.267 0.644 -0.600 1.542 sum 14.628 -26.247 -10.901 31.964 Atomic orbital electron populations 1.21760 0.94684 1.02572 1.01502 1.20509 0.95968 0.90483 1.04357 1.21207 0.99917 0.98996 0.93937 1.21832 0.95616 0.94281 0.99045 1.22282 1.00508 0.96511 0.98956 1.20983 0.96865 0.95908 0.89179 1.20704 0.99584 0.88683 1.03366 1.20996 0.86277 0.82373 0.80729 1.90734 1.31310 1.72417 1.51377 1.45858 1.28853 1.08797 1.53517 1.21200 0.92837 0.90964 0.94890 1.21617 0.99321 0.91521 1.01052 1.22008 0.93746 0.95807 0.98908 0.90813 1.22913 0.96555 0.94188 1.02247 1.21282 0.86864 0.95323 0.91745 1.44856 1.22579 1.08753 1.59194 1.19405 1.00317 1.01149 1.16745 0.90732 1.25695 1.02254 0.99507 0.98467 1.70170 1.45229 1.17877 1.26405 0.85070 0.78429 0.77494 0.78358 1.21448 1.21537 1.19339 1.21556 0.94640 0.85556 0.97301 1.67368 1.11605 1.08833 1.32459 1.22851 0.96097 0.90184 0.98663 0.92982 0.90619 0.93924 0.89068 0.89936 0.82165 0.81775 0.83560 0.84911 0.74350 0.93851 0.92928 0.88249 0.90232 0.89367 0.90747 0.94878 0.99042 0.94232 0.95260 0.97797 0.82770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.90 71.98 0.71 -0.94 16 2 C -0.08 -0.76 6.09 29.85 0.18 -0.58 16 3 C -0.14 -2.21 5.15 -19.77 -0.10 -2.31 16 4 C -0.08 -1.13 9.86 22.47 0.22 -0.91 16 5 C -0.16 -2.42 9.71 22.36 0.22 -2.20 16 6 C 0.11 2.22 5.76 42.55 0.25 2.46 16 7 C -0.08 -1.21 6.10 29.10 0.18 -1.04 16 8 C 0.51 12.16 7.76 87.65 0.68 12.84 16 9 O -0.58 -20.70 15.33 -3.04 -0.05 -20.74 16 10 N -0.72 -13.73 5.56 -463.05 -2.57 -16.30 16 11 C 0.13 3.16 5.54 86.38 0.48 3.63 16 12 C -0.10 -2.18 4.72 30.59 0.14 -2.04 16 13 C -0.09 -2.77 2.95 -9.60 -0.03 -2.80 16 14 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 15 C -0.12 -4.21 6.55 32.06 0.21 -4.00 16 16 C 0.17 8.70 5.43 86.93 0.47 9.17 16 17 N -0.63 -33.78 3.40 -691.55 -2.35 -36.13 16 18 C -0.25 -14.53 10.24 84.03 0.86 -13.67 16 19 H 0.07 4.25 7.85 -2.91 -0.02 4.23 16 20 C -0.07 -3.89 5.40 84.86 0.46 -3.43 16 21 N -0.95 -58.65 10.68 21.65 0.23 -58.42 16 22 Si 0.98 47.04 29.56 68.60 2.03 49.07 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 26 C 0.13 5.78 6.11 86.73 0.53 6.31 16 27 N -0.49 -12.80 9.22 -183.89 -1.70 -14.49 16 28 C 0.08 1.70 10.86 84.67 0.92 2.62 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 0.60 8.10 -2.39 -0.02 0.58 16 33 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 34 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 35 H 0.16 1.28 7.95 -2.91 -0.02 1.25 16 36 H 0.15 0.93 7.87 -2.38 -0.02 0.91 16 37 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.42 4.49 8.47 -92.71 -0.79 3.70 16 39 H 0.04 1.34 7.59 -2.39 -0.02 1.32 16 40 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.08 1.70 8.01 -2.38 -0.02 1.68 16 43 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 45 H 0.03 1.85 6.94 -2.38 -0.02 1.84 16 46 H -0.01 -0.47 8.07 -2.39 -0.02 -0.49 16 47 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 48 H 0.03 1.22 7.73 -2.38 -0.02 1.20 16 49 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 50 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -84.86 405.60 2.10 -82.76 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.13 Total: 11.15 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 6.38 Total: 3.12 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -6.39 Total: -125.35 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -84.86 2.10 -82.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691908148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.685 kcal (2) G-P(sol) polarization free energy of solvation -84.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds