Wall clock time and date at job start Sat Apr 11 2020 02:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46675 * 2 1 4 4 C 1.38677 * 120.41271 * 90.00313 * 3 2 1 5 5 C 1.38634 * 118.41836 * 180.02562 * 4 3 2 6 6 C 1.38222 * 119.16228 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.61897 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46906 * 125.00409 * 7 6 5 9 9 O 1.21280 * 120.00058 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99856 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00083 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47062 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46967 * 180.02562 * 12 11 10 14 14 H 1.08999 * 110.78170 * 308.24051 * 13 12 11 15 15 C 1.55158 * 110.72145 * 184.99928 * 13 12 11 16 16 C 1.54909 * 101.61642 * 206.15534 * 15 13 12 17 17 N 1.47423 * 104.83351 * 36.99324 * 16 15 13 18 18 C 1.36936 * 125.64594 * 155.90840 * 17 16 15 19 19 H 1.08007 * 120.00033 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00281 * 359.97114 * 18 17 16 21 21 N 1.31616 * 120.00050 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47317 * 90.00005 * 22 20 18 24 24 H 1.48493 * 109.47218 * 210.00105 * 22 20 18 25 25 H 1.48503 * 109.47133 * 329.99859 * 22 20 18 26 26 C 1.47016 * 108.70440 * 335.86643 * 17 16 15 27 27 N 1.31858 * 120.76134 * 0.26072 * 6 5 4 28 28 C 1.31880 * 121.72668 * 359.46654 * 27 6 5 29 29 H 1.08998 * 109.47145 * 299.99144 * 1 2 3 30 30 H 1.09000 * 109.47481 * 59.99671 * 1 2 3 31 31 H 1.09002 * 109.46597 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47145 * 240.00856 * 2 1 3 33 33 H 1.09000 * 109.47481 * 120.00329 * 2 1 3 34 34 H 1.07998 * 120.79430 * 359.97438 * 4 3 2 35 35 H 1.07997 * 120.41493 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.46913 * 5.00098 * 7 6 5 37 37 H 1.09005 * 109.47036 * 244.99886 * 7 6 5 38 38 H 0.97002 * 120.00212 * 359.97438 * 10 8 7 39 39 H 1.09007 * 109.46821 * 60.00505 * 11 10 8 40 40 H 1.08996 * 109.47722 * 300.00172 * 11 10 8 41 41 H 1.08996 * 109.47404 * 60.00468 * 12 11 10 42 42 H 1.09005 * 109.47092 * 300.00001 * 12 11 10 43 43 H 1.09002 * 111.00366 * 88.06052 * 15 13 12 44 44 H 1.09002 * 111.00429 * 324.25114 * 15 13 12 45 45 H 1.09000 * 110.36449 * 155.82966 * 16 15 13 46 46 H 1.09002 * 110.36579 * 278.03887 * 16 15 13 47 47 H 0.96996 * 120.00056 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.88531 * 120.47268 * 26 17 16 49 49 H 1.08996 * 109.88671 * 241.49081 * 26 17 16 50 50 H 1.08003 * 119.62282 * 180.27241 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2663 2.0827 1.1960 5 6 2.7275 3.3892 1.1477 6 6 2.9378 3.9843 -0.0820 7 6 3.4384 5.4042 -0.1465 8 6 4.6916 5.4575 -0.9818 9 8 5.1348 4.4424 -1.4757 10 7 5.3204 6.6332 -1.1791 11 6 6.5389 6.6850 -1.9907 12 6 7.0479 8.1265 -2.0552 13 6 8.3201 8.1806 -2.9033 14 1 9.0467 7.4451 -2.5580 15 6 8.9315 9.6066 -2.8854 16 6 9.6977 9.6343 -4.2315 17 7 8.8429 8.8821 -5.1679 18 6 8.8422 9.0154 -6.5307 19 1 8.1752 8.4151 -7.1318 20 6 9.6988 9.9221 -7.1399 21 7 10.5120 10.6534 -6.4076 22 14 9.6973 10.1044 -8.9990 23 1 8.7152 11.1461 -9.3935 24 1 11.0522 10.5022 -9.4584 25 1 9.3233 8.8098 -9.6230 26 6 7.9920 7.9645 -4.3963 27 7 2.7001 3.3258 -1.1994 28 6 2.2659 2.0805 -1.1915 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8935 -0.5139 0.8899 34 1 2.0926 1.5924 2.1424 35 1 2.9208 3.9348 2.0595 36 1 3.6578 5.7582 0.8608 37 1 2.6747 6.0387 -0.5963 38 1 4.9661 7.4451 -0.7838 39 1 6.3197 6.3313 -2.9982 40 1 7.3024 6.0503 -1.5409 41 1 7.2672 8.4798 -1.0476 42 1 6.2845 8.7615 -2.5048 43 1 9.6144 9.7283 -2.0446 44 1 8.1503 10.3664 -2.8647 45 1 9.8244 10.6611 -4.5747 46 1 10.6675 9.1480 -4.1261 47 1 11.1102 11.2872 -6.8333 48 1 6.9416 8.1896 -4.5805 49 1 8.2055 6.9340 -4.6800 50 1 2.0864 1.5718 -2.1272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691908149.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:52 Heat of formation + Delta-G solvation = 3.985511 kcal Electronic energy + Delta-G solvation = -26957.455441 eV Core-core repulsion = 23177.463678 eV Total energy + Delta-G solvation = -3779.991763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.76986 -39.42073 -37.75728 -35.44751 -34.98537 -33.04921 -32.58514 -31.77300 -30.70282 -29.03065 -28.09825 -26.36567 -24.71198 -24.12456 -23.69013 -22.23019 -21.47710 -20.57538 -20.04703 -19.25308 -17.31563 -16.99708 -16.82030 -16.58414 -15.80761 -15.64134 -15.37110 -15.08129 -14.60324 -14.42004 -14.25896 -13.95005 -13.75290 -13.61235 -13.35503 -13.23714 -12.87267 -12.51285 -12.45438 -12.25227 -12.19954 -11.79329 -11.71578 -11.62503 -11.53098 -11.39758 -11.02539 -10.87178 -10.71812 -10.12480 -10.09577 -10.01448 -9.92974 -9.81467 -9.70318 -9.53757 -9.41140 -9.05813 -8.99719 -8.59620 -6.76402 -5.59984 -3.01029 0.80611 1.06263 2.66080 3.09242 3.43474 3.48414 3.50672 3.60301 3.94620 4.32706 4.40065 4.53491 4.54144 4.62340 4.76793 4.88465 4.91731 4.96971 5.04326 5.08549 5.14265 5.16799 5.30929 5.35315 5.45734 5.48857 5.53010 5.58147 5.64893 5.68680 5.75253 5.81125 5.85189 5.95776 5.99620 6.06908 6.24301 6.28379 6.43568 6.44045 6.48614 6.65717 6.69396 6.83322 7.03993 7.48090 7.58108 7.69158 7.83350 7.91212 8.24740 8.42336 9.28303 9.89414 10.55009 11.43994 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.021887 B = 0.001726 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.014305 B =16218.507651 C =17197.622801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.139 4.139 4 C -0.076 4.076 5 C -0.164 4.164 6 C 0.138 3.862 7 C -0.092 4.092 8 C 0.515 3.485 9 O -0.522 6.522 10 N -0.732 5.732 11 C 0.119 3.881 12 C -0.115 4.115 13 C -0.098 4.098 14 H 0.072 0.928 15 C -0.138 4.138 16 C 0.151 3.849 17 N -0.605 5.605 18 C -0.220 4.220 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.140 3.860 27 N -0.452 5.452 28 C 0.108 3.892 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.398 0.602 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.010 0.990 47 H 0.251 0.749 48 H 0.022 0.978 49 H 0.019 0.981 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.402 -14.506 20.926 32.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.141 4.141 4 C -0.102 4.102 5 C -0.184 4.184 6 C 0.000 4.000 7 C -0.133 4.133 8 C 0.300 3.700 9 O -0.396 6.396 10 N -0.385 5.385 11 C -0.004 4.004 12 C -0.153 4.153 13 C -0.117 4.117 14 H 0.090 0.910 15 C -0.177 4.177 16 C 0.026 3.974 17 N -0.331 5.331 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.209 4.209 21 N -0.573 5.573 22 Si 0.745 3.255 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.014 3.986 27 N -0.160 5.160 28 C -0.050 4.050 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.232 0.768 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.040 0.960 49 H 0.037 0.963 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.810 -14.722 19.569 30.879 hybrid contribution -0.196 0.039 0.066 0.211 sum -19.006 -14.683 19.636 31.022 Atomic orbital electron populations 1.21759 0.94528 1.01908 1.02247 1.20471 0.96209 0.91878 1.03267 1.20933 1.01045 0.97783 0.94347 1.21398 0.96493 0.94160 0.98113 1.21896 1.01868 0.96074 0.98578 1.20528 0.95591 0.95140 0.88750 1.20606 0.96812 0.93884 1.01995 1.20214 0.84951 0.83591 0.81269 1.90751 1.65997 1.33906 1.48988 1.46049 1.28545 1.09795 1.54073 1.21471 0.85467 0.97805 0.95648 1.21784 0.98246 0.94896 1.00420 1.22102 0.95360 0.98680 0.95597 0.91002 1.23039 0.99670 0.94814 1.00189 1.21915 0.90510 1.00378 0.84588 1.44519 1.42974 1.43374 1.02259 1.19106 1.17381 1.17588 0.80764 0.90546 1.24782 0.98681 0.99270 0.98132 1.69805 1.26693 1.27969 1.32786 0.86075 0.76852 0.77757 0.84862 1.21651 1.21683 1.20756 1.21373 0.94335 0.93590 0.89307 1.67448 1.09161 1.08666 1.30712 1.22638 0.94546 0.90372 0.97460 0.92650 0.92415 0.92174 0.90571 0.90877 0.84990 0.84839 0.87427 0.87033 0.76793 0.91054 0.91706 0.91688 0.91179 0.92541 0.92220 0.87724 0.97178 0.93834 0.95991 0.96289 0.82982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 37.16 0.37 -0.36 16 2 C -0.08 -0.46 6.09 -27.88 -0.17 -0.63 16 3 C -0.14 -1.16 5.15 -104.48 -0.54 -1.70 16 4 C -0.08 -0.58 9.86 -39.27 -0.39 -0.97 16 5 C -0.16 -1.36 9.71 -39.44 -0.38 -1.75 16 6 C 0.14 1.48 5.76 -82.59 -0.48 1.01 16 7 C -0.09 -0.79 6.10 -29.03 -0.18 -0.96 16 8 C 0.52 6.45 7.76 -10.99 -0.09 6.36 16 9 O -0.52 -9.10 15.35 5.56 0.09 -9.01 16 10 N -0.73 -7.89 5.56 -60.29 -0.33 -8.22 16 11 C 0.12 1.58 5.56 -4.04 -0.02 1.56 16 12 C -0.12 -1.50 4.73 -26.73 -0.13 -1.63 16 13 C -0.10 -1.68 2.93 -88.75 -0.26 -1.94 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.14 -2.60 6.53 -24.58 -0.16 -2.76 16 16 C 0.15 3.74 5.89 -2.53 -0.01 3.73 16 17 N -0.61 -16.02 3.39 -170.04 -0.58 -16.60 16 18 C -0.22 -6.33 10.27 -15.06 -0.15 -6.49 16 19 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 20 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 21 N -0.92 -27.45 10.09 55.49 0.56 -26.89 16 22 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.14 3.01 6.24 -3.04 -0.02 2.99 16 27 N -0.45 -5.85 9.24 -9.48 -0.09 -5.94 16 28 C 0.11 1.14 10.86 -17.55 -0.19 0.95 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.72 7.95 -52.49 -0.42 0.30 16 36 H 0.11 0.54 7.87 -51.93 -0.41 0.13 16 37 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.40 2.94 8.47 -40.82 -0.35 2.60 16 39 H 0.07 1.11 7.69 -51.93 -0.40 0.71 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 1.09 8.05 -51.93 -0.42 0.68 16 45 H 0.11 2.90 5.88 -51.93 -0.31 2.60 16 46 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.02 0.47 7.68 -51.93 -0.40 0.07 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 404.71 15.07 6.10 6.10 Total: -1.00 -36.17 404.71 -10.74 -46.91 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.56 Total: -0.85 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.89 Total: -3.07 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.44 Total: -57.65 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.17 -10.74 -46.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691908149.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.892 kcal (2) G-P(sol) polarization free energy of solvation -36.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds