Wall clock time and date at job start Sat Apr 11 2020 02:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46975 * 2 1 4 4 C 1.38669 * 120.42030 * 89.99652 * 3 2 1 5 5 C 1.38627 * 118.42394 * 180.02562 * 4 3 2 6 6 C 1.38230 * 119.15624 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.61301 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47072 * 124.99792 * 7 6 5 9 9 O 1.21288 * 120.00042 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00031 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99955 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47329 * 175.54050 * 11 10 8 13 13 N 1.46494 * 110.01617 * 55.25405 * 12 11 10 14 14 C 1.36939 * 119.99822 * 61.55780 * 13 12 11 15 15 H 1.07994 * 120.00123 * 354.36683 * 14 13 12 16 16 C 1.38813 * 119.99946 * 174.37487 * 14 13 12 17 17 N 1.31618 * 120.00081 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99945 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46979 * 59.99365 * 18 16 14 20 20 H 1.48501 * 109.47126 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46692 * 299.99825 * 18 16 14 22 22 C 1.54269 * 110.02774 * 293.81498 * 12 11 10 23 23 C 1.54887 * 104.19613 * 217.10214 * 22 12 11 24 24 C 1.54889 * 102.74714 * 37.94401 * 23 22 12 25 25 C 1.53872 * 110.03408 * 176.65026 * 12 11 10 26 26 N 1.31851 * 120.76928 * 359.97438 * 6 5 4 27 27 C 1.31890 * 121.72186 * 359.71044 * 26 6 5 28 28 H 1.09002 * 109.46540 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47239 * 299.99603 * 1 2 3 30 30 H 1.08992 * 109.47253 * 60.00299 * 1 2 3 31 31 H 1.09000 * 109.47239 * 240.00397 * 2 1 3 32 32 H 1.08998 * 109.47645 * 119.99844 * 2 1 3 33 33 H 1.08005 * 120.78630 * 0.03034 * 4 3 2 34 34 H 1.08001 * 120.42184 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.46992 * 244.99562 * 7 6 5 36 36 H 1.08994 * 109.47382 * 4.99763 * 7 6 5 37 37 H 0.96996 * 120.00231 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47003 * 295.54137 * 11 10 8 39 39 H 1.09009 * 109.47490 * 55.53517 * 11 10 8 40 40 H 0.96998 * 120.00500 * 241.54775 * 13 12 11 41 41 H 0.97005 * 120.00057 * 180.02562 * 17 16 14 42 42 H 1.09002 * 110.48935 * 335.78245 * 22 12 11 43 43 H 1.09004 * 110.48348 * 98.42851 * 22 12 11 44 44 H 1.08997 * 110.75994 * 279.62921 * 23 22 12 45 45 H 1.08997 * 110.75834 * 156.25651 * 23 22 12 46 46 H 1.09002 * 110.48817 * 203.37930 * 24 23 22 47 47 H 1.08997 * 110.48432 * 80.73794 * 24 23 22 48 48 H 1.08997 * 110.03148 * 238.56483 * 25 12 11 49 49 H 1.08999 * 110.03123 * 0.02562 * 25 12 11 50 50 H 1.07999 * 119.61779 * 180.30388 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2663 2.0829 1.1958 5 6 2.7275 3.3893 1.1475 6 6 2.9369 3.9845 -0.0824 7 6 3.4376 5.4044 -0.1469 8 6 4.6903 5.4579 -0.9830 9 8 5.1331 4.4427 -1.4775 10 7 5.3185 6.6337 -1.1814 11 6 6.5365 6.6855 -1.9937 12 6 6.9823 8.1405 -2.1524 13 7 7.1456 8.7613 -0.8356 14 6 8.0672 8.2635 0.0465 15 1 8.6088 7.3599 -0.1910 16 6 8.3050 8.9202 1.2461 17 7 7.6452 10.0216 1.5355 18 14 9.5617 8.2407 2.4497 19 1 10.8949 8.1904 1.7976 20 1 9.6284 9.1198 3.6447 21 1 9.1611 6.8718 2.8634 22 6 5.9439 8.9237 -2.9819 23 6 6.7957 9.8888 -3.8433 24 6 8.0270 9.0236 -4.2096 25 6 8.3067 8.2039 -2.9330 26 7 2.7036 3.3244 -1.1997 27 6 2.2704 2.0788 -1.1917 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0933 1.5923 2.1423 34 1 2.9201 3.9353 2.0592 35 1 2.6737 6.0390 -0.5960 36 1 3.6578 5.7582 0.8603 37 1 4.9642 7.4456 -0.7863 38 1 7.3252 6.1153 -1.5028 39 1 6.3366 6.2575 -2.9762 40 1 6.6011 9.5250 -0.5885 41 1 7.8117 10.4807 2.3737 42 1 5.3743 8.2463 -3.6181 43 1 5.2771 9.4847 -2.3270 44 1 7.0956 10.7617 -3.2635 45 1 6.2529 10.1874 -4.7401 46 1 8.8805 9.6573 -4.4507 47 1 7.7939 8.3623 -5.0441 48 1 9.0708 8.6974 -2.3324 49 1 8.6317 7.1981 -3.1992 50 1 2.0951 1.5686 -2.1273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753668917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:42 Heat of formation + Delta-G solvation = -11.915472 kcal Electronic energy + Delta-G solvation = -28352.448149 eV Core-core repulsion = 24571.766867 eV Total energy + Delta-G solvation = -3780.681282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.46807 -39.18855 -38.00090 -35.07452 -33.97956 -33.24693 -32.32094 -31.47152 -30.55943 -28.39016 -28.26107 -27.18634 -24.49346 -23.86046 -23.45301 -22.91995 -21.24056 -20.41691 -19.67556 -18.54972 -17.14382 -16.90318 -16.54379 -16.21938 -15.66800 -15.39974 -14.98073 -14.75890 -14.43450 -14.21115 -14.05690 -13.99491 -13.56731 -13.27539 -13.22190 -13.03164 -12.91674 -12.60373 -12.45633 -12.21747 -12.09348 -11.57436 -11.54013 -11.48176 -11.20839 -10.98841 -10.80372 -10.65868 -10.55184 -10.50031 -10.34842 -10.04477 -9.83394 -9.76637 -9.64177 -9.44702 -9.23136 -8.92363 -8.75573 -8.32732 -7.01570 -5.81249 -3.10168 1.07417 1.32008 3.19795 3.41711 3.46522 3.48103 3.61339 3.97845 4.25633 4.56244 4.58324 4.62614 4.79437 4.87873 5.06611 5.11350 5.13975 5.16750 5.20559 5.26976 5.38192 5.45783 5.48845 5.57500 5.58663 5.59743 5.70988 5.76129 5.79390 5.82428 5.90706 5.99845 6.02857 6.10733 6.13042 6.19620 6.22277 6.28736 6.37405 6.47063 6.60843 6.66881 6.70280 6.76825 6.87293 7.06636 7.20141 7.71776 8.08931 8.17282 8.37821 8.82762 9.49299 10.03812 10.39710 11.40667 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.002902 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.713991 B = 9645.464290 C =11211.026744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.144 4.144 4 C -0.076 4.076 5 C -0.164 4.164 6 C 0.146 3.854 7 C -0.095 4.095 8 C 0.515 3.485 9 O -0.541 6.541 10 N -0.704 5.704 11 C 0.122 3.878 12 C 0.189 3.811 13 N -0.712 5.712 14 C -0.231 4.231 15 H 0.068 0.932 16 C -0.009 4.009 17 N -0.932 5.932 18 Si 0.901 3.099 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.130 4.130 26 N -0.452 5.452 27 C 0.105 3.895 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.402 0.598 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.082 0.918 49 H 0.050 0.950 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.466 -11.656 -4.894 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.184 4.184 6 C 0.008 3.992 7 C -0.136 4.136 8 C 0.300 3.700 9 O -0.418 6.418 10 N -0.354 5.354 11 C -0.004 4.004 12 C 0.096 3.904 13 N -0.353 5.353 14 C -0.363 4.363 15 H 0.086 0.914 16 C -0.205 4.205 17 N -0.580 5.580 18 Si 0.732 3.268 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.158 4.158 25 C -0.170 4.170 26 N -0.160 5.160 27 C -0.053 4.053 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.238 0.762 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.100 0.900 49 H 0.069 0.931 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.846 -12.007 -5.941 18.560 hybrid contribution 0.419 -0.122 1.980 2.027 sum -12.427 -12.129 -3.961 17.811 Atomic orbital electron populations 1.21755 0.94685 1.01715 1.02240 1.20444 0.96086 0.92048 1.03078 1.20881 1.01652 0.97673 0.94415 1.21378 0.96600 0.94194 0.98023 1.21958 1.01512 0.96027 0.98864 1.20597 0.94738 0.95267 0.88571 1.20622 0.97104 0.93248 1.02576 1.20072 0.84954 0.83784 0.81224 1.90684 1.66825 1.34051 1.50236 1.45732 1.27471 1.09600 1.52636 1.21882 0.86159 0.98971 0.93434 1.20453 0.92689 0.90076 0.87136 1.42529 1.45291 1.36821 1.10678 1.19051 1.14452 1.05752 0.96997 0.91372 1.24691 1.00017 0.97260 0.98545 1.69641 1.44543 1.18976 1.24829 0.86363 0.81632 0.77913 0.80864 1.21327 1.21802 1.21365 1.22572 0.97471 0.97909 0.98045 1.22414 0.96249 0.98360 0.98661 1.22308 0.97702 0.98114 0.97711 1.22663 0.99527 0.99105 0.95714 1.67452 1.09221 1.08480 1.30827 1.22594 0.94914 0.90581 0.97243 0.92330 0.92643 0.92471 0.90747 0.90987 0.85119 0.84723 0.87379 0.87310 0.76246 0.92219 0.92855 0.78172 0.93540 0.91787 0.91576 0.91293 0.92646 0.92495 0.92609 0.89966 0.93073 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.08 -0.60 6.09 -27.88 -0.17 -0.77 16 3 C -0.14 -1.56 5.15 -104.48 -0.54 -2.09 16 4 C -0.08 -0.82 9.86 -39.28 -0.39 -1.21 16 5 C -0.16 -2.00 9.71 -39.44 -0.38 -2.38 16 6 C 0.15 2.14 5.76 -82.59 -0.48 1.66 16 7 C -0.09 -1.31 6.10 -29.03 -0.18 -1.48 16 8 C 0.52 9.18 7.76 -10.98 -0.09 9.10 16 9 O -0.54 -11.64 15.33 5.55 0.09 -11.56 16 10 N -0.70 -12.30 5.23 -60.29 -0.32 -12.61 16 11 C 0.12 2.28 4.04 -4.04 -0.02 2.26 16 12 C 0.19 3.44 0.68 -130.71 -0.09 3.35 16 13 N -0.71 -15.81 4.53 -46.20 -0.21 -16.02 16 14 C -0.23 -5.92 8.52 -15.06 -0.13 -6.05 16 15 H 0.07 1.77 7.27 -52.49 -0.38 1.39 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -26.44 13.07 55.49 0.73 -25.72 16 18 Si 0.90 21.93 29.55 -169.99 -5.02 16.90 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 C -0.12 -1.89 5.72 -25.07 -0.14 -2.03 16 23 C -0.12 -1.74 6.91 -24.74 -0.17 -1.91 16 24 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 25 C -0.13 -2.31 5.93 -25.61 -0.15 -2.46 16 26 N -0.45 -7.11 9.23 -9.47 -0.09 -7.20 16 27 C 0.10 1.34 10.86 -17.55 -0.19 1.15 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.13 1.35 7.95 -52.49 -0.42 0.93 16 35 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.11 1.29 7.87 -51.93 -0.41 0.88 16 37 H 0.40 6.68 7.99 -40.82 -0.33 6.36 16 38 H 0.06 1.28 7.46 -51.93 -0.39 0.89 16 39 H 0.05 0.97 8.04 -51.92 -0.42 0.56 16 40 H 0.38 9.10 7.45 -40.82 -0.30 8.80 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.06 0.93 7.79 -51.93 -0.40 0.52 16 43 H 0.07 1.02 7.72 -51.93 -0.40 0.62 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.08 1.68 7.36 -51.93 -0.38 1.30 16 49 H 0.05 0.87 7.67 -51.93 -0.40 0.47 16 50 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 403.90 15.07 6.09 6.09 Total: -1.00 -31.87 403.90 -10.18 -42.05 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -8.43 Total: 13.85 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -3.01 Total: -5.78 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 0.11 Total: -61.55 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.87 -10.18 -42.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.130 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds