Wall clock time and date at job start Sat Apr 11 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46975 * 2 1 4 4 C 1.38669 * 120.42030 * 89.99652 * 3 2 1 5 5 C 1.38627 * 118.42394 * 180.02562 * 4 3 2 6 6 C 1.38230 * 119.15624 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.61301 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47072 * 124.99792 * 7 6 5 9 9 O 1.21288 * 120.00042 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00031 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99955 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47329 * 175.54050 * 11 10 8 13 13 N 1.46494 * 110.01617 * 55.25405 * 12 11 10 14 14 C 1.36939 * 119.99822 * 61.55780 * 13 12 11 15 15 H 1.07994 * 120.00123 * 354.36683 * 14 13 12 16 16 C 1.38813 * 119.99946 * 174.37487 * 14 13 12 17 17 N 1.31618 * 120.00081 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99945 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46979 * 59.99365 * 18 16 14 20 20 H 1.48501 * 109.47126 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46692 * 299.99825 * 18 16 14 22 22 C 1.54269 * 110.02774 * 293.81498 * 12 11 10 23 23 C 1.54887 * 104.19613 * 217.10214 * 22 12 11 24 24 C 1.54889 * 102.74714 * 37.94401 * 23 22 12 25 25 C 1.53872 * 110.03408 * 176.65026 * 12 11 10 26 26 N 1.31851 * 120.76928 * 359.97438 * 6 5 4 27 27 C 1.31890 * 121.72186 * 359.71044 * 26 6 5 28 28 H 1.09002 * 109.46540 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47239 * 299.99603 * 1 2 3 30 30 H 1.08992 * 109.47253 * 60.00299 * 1 2 3 31 31 H 1.09000 * 109.47239 * 240.00397 * 2 1 3 32 32 H 1.08998 * 109.47645 * 119.99844 * 2 1 3 33 33 H 1.08005 * 120.78630 * 0.03034 * 4 3 2 34 34 H 1.08001 * 120.42184 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.46992 * 244.99562 * 7 6 5 36 36 H 1.08994 * 109.47382 * 4.99763 * 7 6 5 37 37 H 0.96996 * 120.00231 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47003 * 295.54137 * 11 10 8 39 39 H 1.09009 * 109.47490 * 55.53517 * 11 10 8 40 40 H 0.96998 * 120.00500 * 241.54775 * 13 12 11 41 41 H 0.97005 * 120.00057 * 180.02562 * 17 16 14 42 42 H 1.09002 * 110.48935 * 335.78245 * 22 12 11 43 43 H 1.09004 * 110.48348 * 98.42851 * 22 12 11 44 44 H 1.08997 * 110.75994 * 279.62921 * 23 22 12 45 45 H 1.08997 * 110.75834 * 156.25651 * 23 22 12 46 46 H 1.09002 * 110.48817 * 203.37930 * 24 23 22 47 47 H 1.08997 * 110.48432 * 80.73794 * 24 23 22 48 48 H 1.08997 * 110.03148 * 238.56483 * 25 12 11 49 49 H 1.08999 * 110.03123 * 0.02562 * 25 12 11 50 50 H 1.07999 * 119.61779 * 180.30388 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2663 2.0829 1.1958 5 6 2.7275 3.3893 1.1475 6 6 2.9369 3.9845 -0.0824 7 6 3.4376 5.4044 -0.1469 8 6 4.6903 5.4579 -0.9830 9 8 5.1331 4.4427 -1.4775 10 7 5.3185 6.6337 -1.1814 11 6 6.5365 6.6855 -1.9937 12 6 6.9823 8.1405 -2.1524 13 7 7.1456 8.7613 -0.8356 14 6 8.0672 8.2635 0.0465 15 1 8.6088 7.3599 -0.1910 16 6 8.3050 8.9202 1.2461 17 7 7.6452 10.0216 1.5355 18 14 9.5617 8.2407 2.4497 19 1 10.8949 8.1904 1.7976 20 1 9.6284 9.1198 3.6447 21 1 9.1611 6.8718 2.8634 22 6 5.9439 8.9237 -2.9819 23 6 6.7957 9.8888 -3.8433 24 6 8.0270 9.0236 -4.2096 25 6 8.3067 8.2039 -2.9330 26 7 2.7036 3.3244 -1.1997 27 6 2.2704 2.0788 -1.1917 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0933 1.5923 2.1423 34 1 2.9201 3.9353 2.0592 35 1 2.6737 6.0390 -0.5960 36 1 3.6578 5.7582 0.8603 37 1 4.9642 7.4456 -0.7863 38 1 7.3252 6.1153 -1.5028 39 1 6.3366 6.2575 -2.9762 40 1 6.6011 9.5250 -0.5885 41 1 7.8117 10.4807 2.3737 42 1 5.3743 8.2463 -3.6181 43 1 5.2771 9.4847 -2.3270 44 1 7.0956 10.7617 -3.2635 45 1 6.2529 10.1874 -4.7401 46 1 8.8805 9.6573 -4.4507 47 1 7.7939 8.3623 -5.0441 48 1 9.0708 8.6974 -2.3324 49 1 8.6317 7.1981 -3.1992 50 1 2.0951 1.5686 -2.1273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753668917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:41 Heat of formation + Delta-G solvation = -31.121789 kcal Electronic energy + Delta-G solvation = -28353.280997 eV Core-core repulsion = 24571.766867 eV Total energy + Delta-G solvation = -3781.514130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47967 -40.56882 -39.42242 -35.88495 -35.50562 -35.02941 -33.31294 -32.54753 -32.10790 -29.74365 -29.58968 -28.39013 -26.04797 -24.96728 -24.70819 -24.03657 -22.12468 -21.67663 -21.04450 -20.06975 -19.00004 -18.08662 -17.71102 -17.42339 -16.99560 -16.49999 -16.17540 -16.16665 -15.80789 -15.73544 -15.17100 -14.98001 -14.79534 -14.65890 -14.44956 -14.12241 -13.93664 -13.88681 -13.56919 -13.41172 -13.23164 -13.02510 -12.85172 -12.70673 -12.60044 -12.31853 -12.16269 -12.05070 -11.83378 -11.82590 -11.79395 -11.52949 -11.41399 -11.31621 -10.93993 -10.79418 -10.67149 -10.24042 -9.86251 -9.68049 -8.94437 -7.89588 -5.15290 0.15000 0.42335 1.45981 1.47068 1.52296 1.80107 2.37179 2.57939 2.92095 3.30980 3.40925 3.75787 3.77616 3.85916 3.86321 3.92798 4.02287 4.05001 4.13408 4.18236 4.35283 4.44488 4.47692 4.51720 4.53366 4.59258 4.64371 4.69534 4.78551 4.79312 4.87247 4.94425 4.99366 5.02828 5.06620 5.09256 5.16074 5.20190 5.21778 5.27927 5.37949 5.42041 5.43371 5.46287 5.59477 5.66501 5.72940 5.82798 6.34198 6.74987 7.14227 7.41097 7.42224 8.14686 8.40886 9.32436 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.002902 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.713991 B = 9645.464290 C =11211.026744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 C -0.137 4.137 4 C -0.080 4.080 5 C -0.169 4.169 6 C 0.116 3.884 7 C -0.087 4.087 8 C 0.511 3.489 9 O -0.581 6.581 10 N -0.701 5.701 11 C 0.131 3.869 12 C 0.185 3.815 13 N -0.713 5.713 14 C -0.215 4.215 15 H 0.060 0.940 16 C -0.063 4.063 17 N -0.959 5.959 18 Si 0.950 3.050 19 H -0.286 1.286 20 H -0.295 1.295 21 H -0.288 1.288 22 C -0.115 4.115 23 C -0.115 4.115 24 C -0.114 4.114 25 C -0.131 4.131 26 N -0.490 5.490 27 C 0.082 3.918 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.408 0.592 38 H 0.026 0.974 39 H 0.060 0.940 40 H 0.377 0.623 41 H 0.249 0.751 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.049 0.951 49 H 0.053 0.947 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.812 -12.652 -5.217 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.139 4.139 4 C -0.106 4.106 5 C -0.188 4.188 6 C -0.022 4.022 7 C -0.127 4.127 8 C 0.297 3.703 9 O -0.461 6.461 10 N -0.351 5.351 11 C 0.004 3.996 12 C 0.095 3.905 13 N -0.353 5.353 14 C -0.347 4.347 15 H 0.078 0.922 16 C -0.255 4.255 17 N -0.610 5.610 18 Si 0.782 3.218 19 H -0.213 1.213 20 H -0.222 1.222 21 H -0.214 1.214 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.151 4.151 25 C -0.171 4.171 26 N -0.198 5.198 27 C -0.075 4.075 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.179 0.821 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.244 0.756 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.210 0.790 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.082 0.918 47 H 0.096 0.904 48 H 0.068 0.932 49 H 0.072 0.928 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.197 -13.011 -6.290 20.258 hybrid contribution 0.823 0.069 2.006 2.169 sum -13.374 -12.941 -4.284 19.097 Atomic orbital electron populations 1.21730 0.93727 1.02683 1.01921 1.20520 0.96765 0.90077 1.04079 1.21219 1.00042 0.98936 0.93718 1.21795 0.95652 0.93785 0.99324 1.22234 1.01016 0.96826 0.98741 1.20782 0.96388 0.95701 0.89351 1.20644 0.95329 0.94026 1.02733 1.20803 0.85737 0.82917 0.80805 1.90656 1.68183 1.35344 1.51960 1.45735 1.26951 1.09998 1.52422 1.21695 0.85834 0.98554 0.93499 1.20672 0.94147 0.89872 0.85840 1.42567 1.44379 1.36522 1.11853 1.19165 1.13698 1.04737 0.97105 0.92243 1.25219 1.02055 0.98054 1.00208 1.69749 1.46134 1.20161 1.24978 0.85564 0.80009 0.77086 0.79181 1.21303 1.22167 1.21439 1.22526 0.96818 0.97999 0.97895 1.22401 0.96103 0.97342 0.99393 1.22293 0.98202 0.98097 0.96547 1.22607 0.98091 0.99565 0.96866 1.67367 1.10511 1.09961 1.31991 1.22937 0.95485 0.90278 0.98821 0.90725 0.92682 0.93101 0.90119 0.89642 0.82122 0.82791 0.85333 0.85432 0.75626 0.95590 0.92198 0.78963 0.94237 0.90122 0.91477 0.92902 0.89650 0.91759 0.90426 0.93183 0.92809 0.82075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 71.98 0.71 -0.87 16 2 C -0.08 -1.00 6.09 29.85 0.18 -0.82 16 3 C -0.14 -2.76 5.15 -19.77 -0.10 -2.86 16 4 C -0.08 -1.57 9.86 22.47 0.22 -1.34 16 5 C -0.17 -3.90 9.71 22.36 0.22 -3.68 16 6 C 0.12 3.32 5.76 42.55 0.25 3.57 16 7 C -0.09 -2.35 6.10 29.10 0.18 -2.17 16 8 C 0.51 18.27 7.76 87.66 0.68 18.95 16 9 O -0.58 -25.55 15.33 -3.05 -0.05 -25.59 16 10 N -0.70 -24.44 5.23 -463.04 -2.42 -26.86 16 11 C 0.13 4.92 4.04 86.38 0.35 5.27 16 12 C 0.19 6.71 0.68 4.33 0.00 6.71 16 13 N -0.71 -31.95 4.53 -300.09 -1.36 -33.30 16 14 C -0.21 -11.16 8.52 84.03 0.72 -10.44 16 15 H 0.06 3.17 7.27 -2.91 -0.02 3.15 16 16 C -0.06 -3.42 5.50 84.86 0.47 -2.96 16 17 N -0.96 -55.15 13.07 21.65 0.28 -54.87 16 18 Si 0.95 45.69 29.55 68.60 2.03 47.71 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 C -0.11 -3.34 5.72 31.67 0.18 -3.16 16 23 C -0.11 -3.09 6.91 31.88 0.22 -2.87 16 24 C -0.11 -3.13 6.83 31.67 0.22 -2.91 16 25 C -0.13 -4.62 5.93 31.32 0.19 -4.43 16 26 N -0.49 -15.50 9.23 -183.88 -1.70 -17.20 16 27 C 0.08 2.10 10.86 84.67 0.92 3.02 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 32 H 0.09 0.92 8.10 -2.39 -0.02 0.90 16 33 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 34 H 0.15 2.79 7.95 -2.91 -0.02 2.77 16 35 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.13 2.88 7.87 -2.39 -0.02 2.86 16 37 H 0.41 13.38 7.99 -92.71 -0.74 12.64 16 38 H 0.03 1.14 7.46 -2.39 -0.02 1.12 16 39 H 0.06 2.17 8.04 -2.38 -0.02 2.15 16 40 H 0.38 18.01 7.45 -92.71 -0.69 17.32 16 41 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 42 H 0.08 2.12 7.79 -2.39 -0.02 2.10 16 43 H 0.07 1.97 7.72 -2.38 -0.02 1.95 16 44 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.05 2.08 7.36 -2.39 -0.02 2.06 16 49 H 0.05 1.83 7.67 -2.39 -0.02 1.81 16 50 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -70.38 403.90 1.88 -68.50 By element: Atomic # 1 Polarization: 43.12 SS G_CDS: -0.50 Total: 42.62 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 5.59 Total: -1.00 kcal Atomic # 7 Polarization: -127.04 SS G_CDS: -5.19 Total: -132.23 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -70.38 1.88 -68.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.374 kcal (2) G-P(sol) polarization free energy of solvation -70.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds