Wall clock time and date at job start Sat Apr 11 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 119.99566 * 2 1 4 4 N 1.46497 * 109.47098 * 125.00795 * 3 2 1 5 5 C 1.35540 * 125.67754 * 263.92126 * 4 3 2 6 6 C 1.35449 * 108.87354 * 180.26301 * 5 4 3 7 7 C 1.39842 * 107.86339 * 359.76507 * 6 5 4 8 8 C 1.37652 * 125.68030 * 83.78539 * 4 3 2 9 9 C 1.46675 * 126.23310 * 0.02562 * 8 4 3 10 10 O 1.21694 * 119.99925 * 354.37877 * 9 8 4 11 11 N 1.34772 * 119.99824 * 174.37703 * 9 8 4 12 12 C 1.46503 * 120.00106 * 184.93080 * 11 9 8 13 13 C 1.52991 * 109.47324 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.45003 * 294.99869 * 13 12 11 15 15 C 1.54867 * 109.42697 * 175.06832 * 13 12 11 16 16 C 1.47156 * 110.31984 * 168.74741 * 15 13 12 17 17 C 1.52564 * 114.34371 * 62.77030 * 16 15 13 18 18 C 1.50886 * 109.34842 * 274.99775 * 17 16 15 19 19 C 1.53941 * 110.09132 * 91.89018 * 18 17 16 20 20 N 1.44573 * 109.45257 * 54.94697 * 13 12 11 21 21 C 1.36941 * 118.64041 * 30.72792 * 20 13 12 22 22 H 1.07998 * 119.99936 * 30.89251 * 21 20 13 23 23 C 1.38806 * 120.00185 * 210.89023 * 21 20 13 24 24 N 1.31626 * 119.99722 * 9.98891 * 23 21 20 25 25 Si 1.86802 * 120.00452 * 189.98268 * 23 21 20 26 26 H 1.48502 * 109.46631 * 90.00173 * 25 23 21 27 27 H 1.48497 * 109.47619 * 210.00256 * 25 23 21 28 28 H 1.48500 * 109.46962 * 330.00618 * 25 23 21 29 29 H 1.08005 * 119.99924 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00142 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.00142 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47616 * 5.00577 * 3 2 1 33 33 H 1.09006 * 109.46981 * 245.00254 * 3 2 1 34 34 H 1.08001 * 125.56151 * 359.97438 * 5 4 3 35 35 H 1.07997 * 126.06702 * 179.74797 * 6 5 4 36 36 H 1.07996 * 126.45183 * 180.02562 * 7 6 5 37 37 H 0.97003 * 120.00597 * 4.92599 * 11 9 8 38 38 H 1.09000 * 109.46992 * 59.99621 * 12 11 9 39 39 H 1.08999 * 109.47053 * 300.00573 * 12 11 9 40 40 H 1.09002 * 109.32993 * 288.98192 * 15 13 12 41 41 H 1.09002 * 109.33536 * 48.46026 * 15 13 12 42 42 H 1.09009 * 108.48273 * 301.52756 * 16 15 13 43 43 H 1.08994 * 108.40472 * 183.95742 * 16 15 13 44 44 H 1.09002 * 109.48837 * 155.03948 * 17 16 15 45 45 H 1.08999 * 109.49524 * 34.96180 * 17 16 15 46 46 H 1.08999 * 109.36834 * 331.69469 * 18 17 16 47 47 H 1.09006 * 109.26318 * 212.01249 * 18 17 16 48 48 H 1.08997 * 108.94614 * 198.74712 * 19 18 17 49 49 H 1.09002 * 108.94917 * 80.12273 * 19 18 17 50 50 H 0.97002 * 119.99730 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.7548 1.9010 2.3380 6 6 3.8441 1.7325 3.1253 7 6 4.8009 1.0272 2.3886 8 6 4.2552 0.7810 1.1467 9 6 4.9033 0.0679 0.0409 10 8 4.2809 -0.1703 -0.9774 11 7 6.1881 -0.3236 0.1525 12 6 6.8683 -0.9389 -0.9898 13 6 8.3064 -1.2865 -0.6003 14 1 8.8587 -0.3694 -0.3954 15 6 8.9857 -2.0482 -1.7651 16 6 10.4341 -2.1571 -1.5286 17 6 10.8098 -2.9560 -0.2843 18 6 10.7757 -2.0492 0.9212 19 6 9.3853 -2.0975 1.5800 20 7 8.2973 -2.1175 0.5827 21 6 7.2352 -2.9575 0.7866 22 1 6.7100 -3.3787 -0.0578 23 6 6.8337 -3.2677 2.0787 24 7 7.3385 -2.6093 3.1006 25 14 5.5769 -4.6192 2.3672 26 1 6.2770 -5.9175 2.5390 27 1 4.7934 -4.3135 3.5911 28 1 4.6614 -4.7010 1.2009 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0897 33 1 2.6212 1.4027 -0.9315 34 1 1.8461 2.4102 2.6234 35 1 3.9542 2.0812 4.1415 36 1 5.7821 0.7309 2.7287 37 1 6.6625 -0.1979 0.9892 38 1 6.8776 -0.2403 -1.8265 39 1 6.3406 -1.8471 -1.2808 40 1 8.5569 -3.0474 -1.8415 41 1 8.8115 -1.5114 -2.6976 42 1 10.8449 -1.1521 -1.4317 43 1 10.8896 -2.6337 -2.3965 44 1 11.8133 -3.3646 -0.4038 45 1 10.0989 -3.7708 -0.1468 46 1 10.9935 -1.0272 0.6110 47 1 11.5275 -2.3771 1.6392 48 1 9.2650 -1.2215 2.2174 49 1 9.3167 -2.9938 2.1966 50 1 7.0577 -2.8258 4.0034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968890576.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:48 Heat of formation + Delta-G solvation = 50.778721 kcal Electronic energy + Delta-G solvation = -30056.284133 eV Core-core repulsion = 26278.321475 eV Total energy + Delta-G solvation = -3777.962657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.03133 -38.76732 -37.72859 -35.19657 -34.36978 -33.42013 -31.84018 -31.04508 -30.65809 -29.08179 -26.78458 -25.88707 -25.53315 -23.44561 -22.72095 -21.35297 -20.24682 -20.07519 -19.82422 -19.15323 -18.74377 -17.62838 -16.18085 -15.59351 -15.54304 -15.27088 -14.83879 -14.66375 -14.41374 -14.12221 -13.83904 -13.70087 -13.51705 -13.21284 -12.92147 -12.88431 -12.63586 -12.37491 -12.06010 -11.96016 -11.93332 -11.62950 -11.45747 -11.23227 -11.18059 -11.02909 -10.83597 -10.56738 -10.17571 -10.01792 -9.96420 -9.67382 -9.63211 -9.56505 -9.50245 -9.25417 -8.42866 -8.39567 -8.25582 -7.76887 -6.62618 -5.78699 -3.27193 1.89987 2.10820 3.10813 3.14712 3.37928 3.46103 3.48150 3.98219 4.11056 4.50290 4.74780 4.87248 5.19599 5.23683 5.30344 5.36868 5.42350 5.47947 5.51970 5.56595 5.66562 5.72219 5.83592 5.89366 5.92395 6.03935 6.11113 6.17241 6.31684 6.39898 6.46864 6.53042 6.56240 6.59188 6.62885 6.65004 6.67251 6.73586 6.78043 6.87128 7.01911 7.09665 7.12766 7.32021 7.34035 7.45002 7.52688 7.71797 7.85499 8.38255 8.48176 8.95487 9.24895 9.87376 10.33723 11.27752 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.004223 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.236522 B = 6628.114297 C = 7197.299622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.152 4.152 3 C 0.134 3.866 4 N -0.411 5.411 5 C 0.003 3.997 6 C -0.208 4.208 7 C -0.132 4.132 8 C -0.039 4.039 9 C 0.582 3.418 10 O -0.573 6.573 11 N -0.676 5.676 12 C 0.133 3.867 13 C 0.174 3.826 14 H 0.045 0.955 15 C -0.136 4.136 16 C -0.101 4.101 17 C -0.106 4.106 18 C -0.144 4.144 19 C 0.181 3.819 20 N -0.583 5.583 21 C -0.250 4.250 22 H 0.060 0.940 23 C 0.018 3.982 24 N -0.901 5.901 25 Si 0.891 3.109 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.161 0.839 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.414 0.586 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.046 0.954 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.073 0.927 46 H 0.043 0.957 47 H 0.048 0.952 48 H 0.025 0.975 49 H 0.073 0.927 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.659 8.408 -3.782 9.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.170 4.170 3 C 0.013 3.987 4 N -0.085 5.085 5 C -0.131 4.131 6 C -0.233 4.233 7 C -0.158 4.158 8 C -0.152 4.152 9 C 0.369 3.631 10 O -0.456 6.456 11 N -0.324 5.324 12 C 0.008 3.992 13 C 0.064 3.936 14 H 0.063 0.937 15 C -0.177 4.177 16 C -0.138 4.138 17 C -0.144 4.144 18 C -0.183 4.183 19 C 0.057 3.943 20 N -0.305 5.305 21 C -0.380 4.380 22 H 0.078 0.922 23 C -0.181 4.181 24 N -0.545 5.545 25 Si 0.722 3.278 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.105 0.895 33 H 0.128 0.872 34 H 0.179 0.821 35 H 0.155 0.845 36 H 0.166 0.834 37 H 0.251 0.749 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.043 0.957 49 H 0.092 0.908 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.294 8.237 -4.625 10.376 hybrid contribution -0.511 -0.906 0.758 1.287 sum -4.805 7.330 -3.867 9.580 Atomic orbital electron populations 1.23814 0.95486 1.01931 1.01233 1.23193 0.95879 0.98983 0.98992 1.21015 0.91713 0.96246 0.89750 1.43882 1.11793 1.41413 1.11372 1.21849 1.01046 1.04810 0.85434 1.20777 0.94576 1.07568 1.00357 1.21504 1.00613 1.01346 0.92295 1.20251 0.87678 1.09375 0.97895 1.16916 0.82124 0.78849 0.85244 1.90714 1.64206 1.59033 1.31667 1.45355 1.11051 1.59057 1.16971 1.21473 0.93717 0.97081 0.86899 1.20510 0.92119 0.92667 0.88259 0.93744 1.21386 0.96071 1.01764 0.98467 1.20298 0.96691 0.99404 0.97422 1.20945 0.99482 0.99363 0.94593 1.22085 1.00520 0.98169 0.97492 1.21005 0.82414 1.01491 0.89408 1.43688 1.20146 1.44758 1.21920 1.18982 1.07234 1.20537 0.91255 0.92185 1.24971 0.97959 0.98837 0.96382 1.69978 1.45520 1.40881 0.98141 0.86460 0.81632 0.82251 0.77489 1.21642 1.21754 1.20642 0.88055 0.88616 0.86336 0.89470 0.87201 0.82148 0.84452 0.83410 0.74895 0.93291 0.91295 0.91874 0.93372 0.93526 0.94162 0.94268 0.90800 0.93838 0.93326 0.95722 0.90818 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 14.32 29.01 0.42 -1.68 16 2 C -0.15 -2.15 9.60 -36.03 -0.35 -2.50 16 3 C 0.13 1.82 5.81 -5.20 -0.03 1.79 16 4 N -0.41 -6.50 2.74 -114.16 -0.31 -6.82 16 5 C 0.00 0.04 11.37 -16.91 -0.19 -0.15 16 6 C -0.21 -3.15 10.81 -39.98 -0.43 -3.59 16 7 C -0.13 -2.33 10.35 -39.12 -0.41 -2.74 16 8 C -0.04 -0.73 6.88 -81.98 -0.56 -1.29 16 9 C 0.58 11.83 7.77 -12.86 -0.10 11.73 16 10 O -0.57 -12.45 14.69 5.19 0.08 -12.38 16 11 N -0.68 -13.50 4.70 -61.62 -0.29 -13.79 16 12 C 0.13 2.55 4.53 -4.04 -0.02 2.53 16 13 C 0.17 3.24 2.19 -67.98 -0.15 3.09 16 14 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 15 C -0.14 -2.27 5.07 -28.55 -0.14 -2.42 16 16 C -0.10 -1.57 5.16 -29.76 -0.15 -1.72 16 17 C -0.11 -1.79 5.51 -28.02 -0.15 -1.94 16 18 C -0.14 -2.53 5.71 -27.30 -0.16 -2.69 16 19 C 0.18 3.89 4.64 -2.95 -0.01 3.88 16 20 N -0.58 -12.55 1.77 -164.48 -0.29 -12.84 16 21 C -0.25 -6.14 7.55 -15.06 -0.11 -6.25 16 22 H 0.06 1.56 6.83 -52.49 -0.36 1.20 16 23 C 0.02 0.45 4.99 -17.43 -0.09 0.37 16 24 N -0.90 -23.57 10.97 55.49 0.61 -22.97 16 25 Si 0.89 21.62 29.57 -169.99 -5.03 16.59 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 29 H 0.10 1.06 8.06 -52.48 -0.42 0.64 16 30 H 0.10 0.86 7.84 -52.49 -0.41 0.45 16 31 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.09 0.89 7.77 -51.93 -0.40 0.48 16 33 H 0.11 1.64 6.82 -51.93 -0.35 1.29 16 34 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.15 2.70 7.45 -52.49 -0.39 2.30 16 37 H 0.41 8.59 6.98 -40.82 -0.28 8.31 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.48 6.90 -51.93 -0.36 1.12 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 42 H 0.05 0.70 7.36 -51.92 -0.38 0.31 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.44 7.48 -51.93 -0.39 1.05 16 46 H 0.04 0.73 7.32 -51.93 -0.38 0.35 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.02 0.57 7.99 -51.93 -0.41 0.15 16 49 H 0.07 1.81 6.49 -51.93 -0.34 1.47 16 50 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 392.66 15.07 5.92 5.92 Total: -1.00 -27.53 392.66 -10.21 -37.73 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -8.24 Total: 12.14 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.64 Total: -3.58 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.28 Total: -56.42 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.38 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -27.53 -10.21 -37.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890576.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.511 kcal (2) G-P(sol) polarization free energy of solvation -27.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds