Wall clock time and date at job start Sat Apr 11 2020 02:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 119.99566 * 2 1 4 4 N 1.46497 * 109.47098 * 125.00795 * 3 2 1 5 5 C 1.35540 * 125.67754 * 263.92126 * 4 3 2 6 6 C 1.35449 * 108.87354 * 180.26301 * 5 4 3 7 7 C 1.39842 * 107.86339 * 359.76507 * 6 5 4 8 8 C 1.37652 * 125.68030 * 83.78539 * 4 3 2 9 9 C 1.46675 * 126.23310 * 0.02562 * 8 4 3 10 10 O 1.21694 * 119.99925 * 354.37877 * 9 8 4 11 11 N 1.34772 * 119.99824 * 174.37703 * 9 8 4 12 12 C 1.46503 * 120.00106 * 184.93080 * 11 9 8 13 13 C 1.52991 * 109.47324 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.45003 * 294.99869 * 13 12 11 15 15 C 1.54867 * 109.42697 * 175.06832 * 13 12 11 16 16 C 1.47156 * 110.31984 * 168.74741 * 15 13 12 17 17 C 1.52564 * 114.34371 * 62.77030 * 16 15 13 18 18 C 1.50886 * 109.34842 * 274.99775 * 17 16 15 19 19 C 1.53941 * 110.09132 * 91.89018 * 18 17 16 20 20 N 1.44573 * 109.45257 * 54.94697 * 13 12 11 21 21 C 1.36941 * 118.64041 * 30.72792 * 20 13 12 22 22 H 1.07998 * 119.99936 * 30.89251 * 21 20 13 23 23 C 1.38806 * 120.00185 * 210.89023 * 21 20 13 24 24 N 1.31626 * 119.99722 * 9.98891 * 23 21 20 25 25 Si 1.86802 * 120.00452 * 189.98268 * 23 21 20 26 26 H 1.48502 * 109.46631 * 90.00173 * 25 23 21 27 27 H 1.48497 * 109.47619 * 210.00256 * 25 23 21 28 28 H 1.48500 * 109.46962 * 330.00618 * 25 23 21 29 29 H 1.08005 * 119.99924 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00142 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.00142 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47616 * 5.00577 * 3 2 1 33 33 H 1.09006 * 109.46981 * 245.00254 * 3 2 1 34 34 H 1.08001 * 125.56151 * 359.97438 * 5 4 3 35 35 H 1.07997 * 126.06702 * 179.74797 * 6 5 4 36 36 H 1.07996 * 126.45183 * 180.02562 * 7 6 5 37 37 H 0.97003 * 120.00597 * 4.92599 * 11 9 8 38 38 H 1.09000 * 109.46992 * 59.99621 * 12 11 9 39 39 H 1.08999 * 109.47053 * 300.00573 * 12 11 9 40 40 H 1.09002 * 109.32993 * 288.98192 * 15 13 12 41 41 H 1.09002 * 109.33536 * 48.46026 * 15 13 12 42 42 H 1.09009 * 108.48273 * 301.52756 * 16 15 13 43 43 H 1.08994 * 108.40472 * 183.95742 * 16 15 13 44 44 H 1.09002 * 109.48837 * 155.03948 * 17 16 15 45 45 H 1.08999 * 109.49524 * 34.96180 * 17 16 15 46 46 H 1.08999 * 109.36834 * 331.69469 * 18 17 16 47 47 H 1.09006 * 109.26318 * 212.01249 * 18 17 16 48 48 H 1.08997 * 108.94614 * 198.74712 * 19 18 17 49 49 H 1.09002 * 108.94917 * 80.12273 * 19 18 17 50 50 H 0.97002 * 119.99730 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.7548 1.9010 2.3380 6 6 3.8441 1.7325 3.1253 7 6 4.8009 1.0272 2.3886 8 6 4.2552 0.7810 1.1467 9 6 4.9033 0.0679 0.0409 10 8 4.2809 -0.1703 -0.9774 11 7 6.1881 -0.3236 0.1525 12 6 6.8683 -0.9389 -0.9898 13 6 8.3064 -1.2865 -0.6003 14 1 8.8587 -0.3694 -0.3954 15 6 8.9857 -2.0482 -1.7651 16 6 10.4341 -2.1571 -1.5286 17 6 10.8098 -2.9560 -0.2843 18 6 10.7757 -2.0492 0.9212 19 6 9.3853 -2.0975 1.5800 20 7 8.2973 -2.1175 0.5827 21 6 7.2352 -2.9575 0.7866 22 1 6.7100 -3.3787 -0.0578 23 6 6.8337 -3.2677 2.0787 24 7 7.3385 -2.6093 3.1006 25 14 5.5769 -4.6192 2.3672 26 1 6.2770 -5.9175 2.5390 27 1 4.7934 -4.3135 3.5911 28 1 4.6614 -4.7010 1.2009 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0897 33 1 2.6212 1.4027 -0.9315 34 1 1.8461 2.4102 2.6234 35 1 3.9542 2.0812 4.1415 36 1 5.7821 0.7309 2.7287 37 1 6.6625 -0.1979 0.9892 38 1 6.8776 -0.2403 -1.8265 39 1 6.3406 -1.8471 -1.2808 40 1 8.5569 -3.0474 -1.8415 41 1 8.8115 -1.5114 -2.6976 42 1 10.8449 -1.1521 -1.4317 43 1 10.8896 -2.6337 -2.3965 44 1 11.8133 -3.3646 -0.4038 45 1 10.0989 -3.7708 -0.1468 46 1 10.9935 -1.0272 0.6110 47 1 11.5275 -2.3771 1.6392 48 1 9.2650 -1.2215 2.2174 49 1 9.3167 -2.9938 2.1966 50 1 7.0577 -2.8258 4.0034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968890576.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:47 Heat of formation + Delta-G solvation = 37.633450 kcal Electronic energy + Delta-G solvation = -30056.854155 eV Core-core repulsion = 26278.321475 eV Total energy + Delta-G solvation = -3778.532679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.28683 -40.33139 -39.28689 -36.33727 -35.84009 -35.18077 -33.33967 -32.46929 -32.19072 -30.44063 -28.41670 -27.15647 -26.96201 -25.19344 -24.19715 -22.82342 -21.46631 -21.27485 -21.16838 -20.75629 -20.17064 -18.97367 -17.91392 -17.26252 -16.99580 -16.59908 -16.28675 -16.18681 -15.82862 -15.73993 -15.19823 -15.14543 -15.00821 -14.67246 -14.36673 -14.25117 -13.93876 -13.64860 -13.55934 -13.37881 -13.17936 -13.15641 -12.89349 -12.84735 -12.79051 -12.72501 -12.39061 -12.21175 -12.02105 -11.55001 -11.38700 -11.31301 -11.19811 -11.08581 -10.83630 -10.52609 -10.36169 -9.86349 -9.65893 -9.07076 -8.48868 -7.78516 -5.25156 0.56719 1.07930 1.36562 1.41921 1.45422 1.89050 1.94203 2.47821 2.51623 2.68976 3.37607 3.61668 3.76567 3.88217 3.96568 4.05520 4.10063 4.21341 4.28275 4.28730 4.44356 4.51362 4.52020 4.56770 4.62525 4.62716 4.67911 4.81352 4.91699 5.02460 5.09131 5.14984 5.21010 5.27035 5.28068 5.32841 5.39585 5.44180 5.52912 5.56913 5.62108 5.67098 5.69965 5.77382 5.81059 5.90477 5.94321 6.03664 6.42389 6.50169 6.76415 7.29262 7.35854 8.01813 8.40709 9.24387 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.004223 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.236522 B = 6628.114297 C = 7197.299622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.191 4.191 3 C 0.136 3.864 4 N -0.412 5.412 5 C 0.028 3.972 6 C -0.222 4.222 7 C -0.142 4.142 8 C -0.078 4.078 9 C 0.575 3.425 10 O -0.596 6.596 11 N -0.680 5.680 12 C 0.137 3.863 13 C 0.173 3.827 14 H 0.057 0.943 15 C -0.127 4.127 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.133 4.133 19 C 0.191 3.809 20 N -0.587 5.587 21 C -0.232 4.232 22 H 0.043 0.957 23 C -0.019 4.019 24 N -0.914 5.914 25 Si 0.926 3.074 26 H -0.287 1.287 27 H -0.298 1.298 28 H -0.292 1.292 29 H 0.107 0.893 30 H 0.132 0.868 31 H 0.071 0.929 32 H 0.134 0.866 33 H 0.087 0.913 34 H 0.210 0.790 35 H 0.161 0.839 36 H 0.130 0.870 37 H 0.409 0.591 38 H 0.067 0.933 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.041 0.959 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.002 0.998 49 H 0.038 0.962 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 10.445 -4.370 12.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.210 4.210 3 C 0.016 3.984 4 N -0.085 5.085 5 C -0.107 4.107 6 C -0.246 4.246 7 C -0.169 4.169 8 C -0.191 4.191 9 C 0.364 3.636 10 O -0.480 6.480 11 N -0.327 5.327 12 C 0.012 3.988 13 C 0.066 3.934 14 H 0.075 0.925 15 C -0.168 4.168 16 C -0.137 4.137 17 C -0.141 4.141 18 C -0.172 4.172 19 C 0.066 3.934 20 N -0.310 5.310 21 C -0.363 4.363 22 H 0.061 0.939 23 C -0.216 4.216 24 N -0.560 5.560 25 Si 0.758 3.242 26 H -0.214 1.214 27 H -0.225 1.225 28 H -0.218 1.218 29 H 0.125 0.875 30 H 0.150 0.850 31 H 0.090 0.910 32 H 0.151 0.849 33 H 0.105 0.895 34 H 0.227 0.773 35 H 0.179 0.821 36 H 0.148 0.852 37 H 0.245 0.755 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.021 0.979 49 H 0.056 0.944 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.001 10.265 -5.245 12.566 hybrid contribution -0.393 -1.523 0.913 1.818 sum -5.393 8.743 -4.332 11.148 Atomic orbital electron populations 1.24107 0.94177 1.03912 0.96416 1.22938 0.96928 0.97538 1.03554 1.21144 0.91640 0.97450 0.88192 1.44154 1.11034 1.40678 1.12656 1.22628 1.01870 1.02330 0.83850 1.21102 0.94320 1.07605 1.01565 1.21542 1.00671 1.01948 0.92759 1.20068 0.89652 1.11692 0.97694 1.17292 0.82047 0.78656 0.85651 1.90682 1.64565 1.60092 1.32709 1.45410 1.11258 1.59212 1.16830 1.21467 0.93646 0.96254 0.87390 1.20683 0.92038 0.92899 0.87816 0.92530 1.21292 0.96731 1.00373 0.98383 1.20283 0.95625 1.00273 0.97563 1.20906 1.00018 0.98332 0.94820 1.21952 0.97741 0.99507 0.97965 1.20773 0.84694 0.98666 0.89233 1.43727 1.19606 1.44867 1.22759 1.18875 1.07133 1.19911 0.90350 0.93910 1.25285 0.99328 1.00290 0.96723 1.70066 1.46413 1.41747 0.97768 0.85909 0.80445 0.81430 0.76393 1.21440 1.22496 1.21796 0.87509 0.84958 0.91041 0.84858 0.89470 0.77297 0.82133 0.85163 0.75506 0.91482 0.94162 0.94053 0.90857 0.91961 0.91922 0.91809 0.94019 0.92200 0.92107 0.97941 0.94355 0.94458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 14.32 67.78 0.97 -1.95 16 2 C -0.19 -5.32 9.60 25.64 0.25 -5.07 16 3 C 0.14 3.51 5.81 85.63 0.50 4.01 16 4 N -0.41 -12.67 2.74 -515.08 -1.41 -14.09 16 5 C 0.03 0.71 11.37 83.48 0.95 1.66 16 6 C -0.22 -6.42 10.81 22.01 0.24 -6.18 16 7 C -0.14 -5.20 10.35 22.57 0.23 -4.96 16 8 C -0.08 -3.01 6.88 40.35 0.28 -2.73 16 9 C 0.57 24.68 7.77 86.45 0.67 25.36 16 10 O -0.60 -27.36 14.69 -4.33 -0.06 -27.42 16 11 N -0.68 -28.59 4.70 -467.10 -2.20 -30.79 16 12 C 0.14 5.43 4.53 86.38 0.39 5.82 16 13 C 0.17 6.48 2.19 45.99 0.10 6.58 16 14 H 0.06 2.01 8.07 -2.39 -0.02 2.00 16 15 C -0.13 -4.09 5.07 29.41 0.15 -3.94 16 16 C -0.10 -2.84 5.16 28.63 0.15 -2.69 16 17 C -0.10 -3.29 5.51 29.76 0.16 -3.13 16 18 C -0.13 -4.51 5.71 30.22 0.17 -4.34 16 19 C 0.19 8.39 4.64 86.49 0.40 8.79 16 20 N -0.59 -26.02 1.77 -674.29 -1.19 -27.21 16 21 C -0.23 -11.88 7.55 84.03 0.63 -11.25 16 22 H 0.04 2.35 6.83 -2.91 -0.02 2.33 16 23 C -0.02 -1.04 4.99 84.86 0.42 -0.62 16 24 N -0.91 -50.01 10.97 21.65 0.24 -49.77 16 25 Si 0.93 46.23 29.57 68.60 2.03 48.26 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 28 H -0.29 -14.92 7.11 99.48 0.71 -14.22 16 29 H 0.11 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.13 1.67 7.84 -2.91 -0.02 1.65 16 31 H 0.07 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.13 2.15 7.77 -2.39 -0.02 2.13 16 33 H 0.09 2.64 6.82 -2.38 -0.02 2.62 16 34 H 0.21 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 36 H 0.13 5.09 7.45 -2.91 -0.02 5.07 16 37 H 0.41 17.97 6.98 -92.71 -0.65 17.33 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.04 1.82 6.90 -2.39 -0.02 1.80 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 2.01 8.11 -2.39 -0.02 1.99 16 42 H 0.06 1.62 7.36 -2.38 -0.02 1.60 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.04 1.60 7.48 -2.39 -0.02 1.59 16 46 H 0.06 1.86 7.32 -2.39 -0.02 1.84 16 47 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 48 H 0.00 0.12 7.99 -2.39 -0.02 0.10 16 49 H 0.04 1.94 6.49 -2.39 -0.02 1.93 16 50 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 Total: -1.00 -64.98 392.66 4.34 -60.64 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.27 Total: 35.02 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 6.67 Total: 5.35 kcal Atomic # 7 Polarization: -117.29 SS G_CDS: -4.56 Total: -121.86 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.06 Total: -27.42 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -64.98 4.34 -60.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890576.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.278 kcal (2) G-P(sol) polarization free energy of solvation -64.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds