Wall clock time and date at job start Sat Apr 11 2020 02:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00191 * 2 1 4 4 N 1.46494 * 109.46956 * 124.99978 * 3 2 1 5 5 C 1.35538 * 125.68158 * 261.21329 * 4 3 2 6 6 C 1.35451 * 108.87011 * 180.26797 * 5 4 3 7 7 C 1.39830 * 107.86690 * 359.77023 * 6 5 4 8 8 C 1.37649 * 125.67550 * 81.08880 * 4 3 2 9 9 C 1.46672 * 126.23516 * 359.97438 * 8 4 3 10 10 O 1.21696 * 119.99911 * 4.85905 * 9 8 4 11 11 N 1.34781 * 120.00336 * 184.85825 * 9 8 4 12 12 C 1.46502 * 120.00021 * 174.92441 * 11 9 8 13 13 C 1.53000 * 109.46914 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.43160 * 64.93280 * 13 12 11 15 15 C 1.54868 * 109.44979 * 184.86826 * 13 12 11 16 16 C 1.47098 * 110.32372 * 191.28955 * 15 13 12 17 17 C 1.52567 * 114.32748 * 297.19305 * 16 15 13 18 18 C 1.50880 * 109.35055 * 85.02378 * 17 16 15 19 19 C 1.53949 * 110.09442 * 268.10944 * 18 17 16 20 20 N 1.44582 * 109.44797 * 304.99629 * 13 12 11 21 21 C 1.36939 * 118.64449 * 329.27053 * 20 13 12 22 22 H 1.08004 * 119.99741 * 331.96674 * 21 20 13 23 23 C 1.38809 * 120.00539 * 151.96579 * 21 20 13 24 24 N 1.31619 * 119.99563 * 343.35297 * 23 21 20 25 25 Si 1.86795 * 120.00294 * 163.35377 * 23 21 20 26 26 H 1.48501 * 109.46869 * 94.98753 * 25 23 21 27 27 H 1.48496 * 109.47336 * 214.98684 * 25 23 21 28 28 H 1.48502 * 109.47320 * 334.98846 * 25 23 21 29 29 H 1.07999 * 119.99790 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99746 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99746 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46753 * 5.00259 * 3 2 1 33 33 H 1.09000 * 109.47387 * 245.00564 * 3 2 1 34 34 H 1.07994 * 125.55959 * 0.02562 * 5 4 3 35 35 H 1.07998 * 126.06095 * 179.79019 * 6 5 4 36 36 H 1.08001 * 126.45763 * 179.97438 * 7 6 5 37 37 H 0.97001 * 119.99628 * 354.92944 * 11 9 8 38 38 H 1.08991 * 109.47315 * 60.00191 * 12 11 9 39 39 H 1.09003 * 109.47148 * 299.99806 * 12 11 9 40 40 H 1.08998 * 109.32517 * 311.54963 * 15 13 12 41 41 H 1.09003 * 109.32861 * 71.02821 * 15 13 12 42 42 H 1.08994 * 108.50937 * 175.93781 * 16 15 13 43 43 H 1.09002 * 108.38567 * 58.35175 * 16 15 13 44 44 H 1.09001 * 109.49366 * 325.06157 * 17 16 15 45 45 H 1.08999 * 109.51017 * 205.00326 * 17 16 15 46 46 H 1.09001 * 109.36328 * 147.92282 * 18 17 16 47 47 H 1.09001 * 109.26484 * 28.23969 * 18 17 16 48 48 H 1.08998 * 108.94377 * 279.87846 * 19 18 17 49 49 H 1.09003 * 108.87391 * 161.20104 * 19 18 17 50 50 H 0.97001 * 119.99874 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.7754 1.9452 2.3201 6 6 3.8575 1.7608 3.1136 7 6 4.7881 0.9993 2.3999 8 6 4.2342 0.7360 1.1651 9 6 4.8558 -0.0339 0.0825 10 8 4.3035 -0.1190 -0.9986 11 7 6.0389 -0.6472 0.2848 12 6 6.6061 -1.5068 -0.7572 13 6 7.9428 -2.0758 -0.2772 14 1 7.7722 -2.7305 0.5774 15 6 8.6004 -2.8840 -1.4229 16 6 9.7421 -3.6581 -0.9120 17 6 10.8773 -2.8075 -0.3504 18 6 10.5827 -2.4689 1.0901 19 6 9.8316 -1.1277 1.1753 20 7 8.8151 -0.9911 0.1138 21 6 8.6929 0.2131 -0.5267 22 1 8.3317 0.2494 -1.5439 23 6 9.0331 1.3870 0.1313 24 7 9.1551 1.3952 1.4418 25 14 9.3177 2.9551 -0.8430 26 1 8.0654 3.7527 -0.8740 27 1 10.3946 3.7494 -0.1992 28 1 9.7192 2.6099 -2.2305 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.8856 2.4950 2.5890 35 1 3.9796 2.1351 4.1193 36 1 5.7581 0.6784 2.7497 37 1 6.5146 -0.5195 1.1204 38 1 6.7640 -0.9228 -1.6638 39 1 5.9177 -2.3253 -0.9675 40 1 7.8655 -3.5653 -1.8516 41 1 8.9466 -2.1979 -2.1959 42 1 10.1366 -4.2694 -1.7236 43 1 9.3835 -4.3204 -0.1241 44 1 10.9639 -1.8882 -0.9296 45 1 11.8127 -3.3639 -0.4093 46 1 11.5193 -2.3943 1.6427 47 1 9.9675 -3.2561 1.5261 48 1 10.5502 -0.3133 1.0842 49 1 9.3409 -1.0594 2.1462 50 1 9.3932 2.2154 1.9016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968890577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:52 Heat of formation + Delta-G solvation = 51.467815 kcal Electronic energy + Delta-G solvation = -29973.895994 eV Core-core repulsion = 26195.963218 eV Total energy + Delta-G solvation = -3777.932776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.02604 -38.77295 -37.73485 -35.22986 -34.37884 -33.42915 -31.85331 -31.05851 -30.66781 -29.07851 -26.78902 -25.89806 -25.53921 -23.45855 -22.72101 -21.36308 -20.29386 -20.06027 -19.82659 -19.17243 -18.76118 -17.61977 -16.18317 -15.60980 -15.51871 -15.30581 -14.90845 -14.57340 -14.45522 -14.10378 -13.94104 -13.56457 -13.54325 -13.26532 -13.00360 -12.85376 -12.65458 -12.37724 -12.07304 -11.97204 -11.94197 -11.61918 -11.46320 -11.27636 -11.18961 -11.06852 -10.80032 -10.57303 -10.18931 -10.01631 -9.97311 -9.70638 -9.67096 -9.55604 -9.51774 -9.25275 -8.41850 -8.38964 -8.25307 -7.76137 -6.66960 -5.79721 -3.22697 1.91260 2.04151 3.11603 3.14428 3.38737 3.46925 3.49089 3.98788 4.11499 4.51402 4.71231 4.84222 5.20182 5.22157 5.24844 5.36436 5.41817 5.47457 5.51376 5.60244 5.66224 5.71626 5.79373 5.87855 5.91459 6.02899 6.10127 6.15990 6.30723 6.39141 6.45265 6.47717 6.50574 6.58172 6.60141 6.63923 6.66449 6.72433 6.77301 6.85691 7.00955 7.10253 7.12350 7.31921 7.34837 7.41807 7.53380 7.66756 7.86215 8.38406 8.45682 8.95761 9.23412 9.87972 10.33228 11.27432 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.004219 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.721921 B = 6635.399100 C = 7635.768970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.151 4.151 3 C 0.130 3.870 4 N -0.410 5.410 5 C 0.003 3.997 6 C -0.208 4.208 7 C -0.131 4.131 8 C -0.039 4.039 9 C 0.583 3.417 10 O -0.574 6.574 11 N -0.676 5.676 12 C 0.133 3.867 13 C 0.173 3.827 14 H 0.044 0.956 15 C -0.136 4.136 16 C -0.101 4.101 17 C -0.106 4.106 18 C -0.143 4.143 19 C 0.181 3.819 20 N -0.583 5.583 21 C -0.252 4.252 22 H 0.062 0.938 23 C 0.016 3.984 24 N -0.898 5.898 25 Si 0.889 3.111 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.161 0.839 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.414 0.586 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.049 0.951 47 H 0.043 0.957 48 H 0.072 0.928 49 H 0.024 0.976 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 -4.624 1.595 10.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.170 4.170 3 C 0.009 3.991 4 N -0.084 5.084 5 C -0.132 4.132 6 C -0.233 4.233 7 C -0.157 4.157 8 C -0.152 4.152 9 C 0.370 3.630 10 O -0.457 6.457 11 N -0.325 5.325 12 C 0.008 3.992 13 C 0.064 3.936 14 H 0.062 0.938 15 C -0.177 4.177 16 C -0.138 4.138 17 C -0.144 4.144 18 C -0.182 4.182 19 C 0.056 3.944 20 N -0.305 5.305 21 C -0.381 4.381 22 H 0.079 0.921 23 C -0.183 4.183 24 N -0.542 5.542 25 Si 0.719 3.281 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.106 0.894 33 H 0.131 0.869 34 H 0.178 0.822 35 H 0.155 0.845 36 H 0.166 0.834 37 H 0.251 0.749 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.090 0.910 49 H 0.043 0.957 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.069 -4.599 0.666 11.090 hybrid contribution 0.490 1.091 -0.081 1.198 sum -9.579 -3.509 0.585 10.218 Atomic orbital electron populations 1.23820 0.95483 1.01987 1.01092 1.23144 0.95843 0.98786 0.99184 1.21054 0.91767 0.96202 0.90032 1.43864 1.13095 1.39337 1.12106 1.21852 1.01424 1.03915 0.85980 1.20772 0.94950 1.06845 1.00723 1.21501 1.00056 1.01487 0.92637 1.20236 0.88621 1.08484 0.97851 1.16912 0.81543 0.78811 0.85772 1.90707 1.64973 1.64000 1.26014 1.45356 1.19347 1.46840 1.20917 1.21481 0.93768 0.92339 0.91627 1.20507 0.88298 0.90307 0.94452 0.93766 1.21372 0.97298 0.98911 1.00096 1.20287 0.96284 0.97885 0.99360 1.20946 0.96015 1.00133 0.97319 1.22070 0.99656 1.00575 0.95896 1.20983 0.90635 0.92572 0.90193 1.43706 1.36068 1.08131 1.42558 1.18980 1.41070 0.83169 0.94930 0.92056 1.24865 1.01413 0.97082 0.94936 1.70018 1.51539 1.26809 1.05823 0.86491 0.77596 0.84253 0.79730 1.21657 1.21708 1.20642 0.88062 0.88539 0.86645 0.89394 0.86937 0.82152 0.84457 0.83402 0.74870 0.91283 0.93292 0.93371 0.91822 0.94121 0.93537 0.90765 0.94237 0.93264 0.93793 0.90997 0.95741 0.93738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 14.32 29.01 0.42 -1.46 16 2 C -0.15 -1.94 9.68 -36.03 -0.35 -2.29 16 3 C 0.13 1.78 5.83 -5.20 -0.03 1.75 16 4 N -0.41 -6.52 2.75 -114.16 -0.31 -6.84 16 5 C 0.00 0.04 11.36 -16.91 -0.19 -0.16 16 6 C -0.21 -3.16 10.81 -39.98 -0.43 -3.60 16 7 C -0.13 -2.33 10.35 -39.12 -0.41 -2.73 16 8 C -0.04 -0.73 6.88 -81.98 -0.56 -1.29 16 9 C 0.58 11.87 7.77 -12.85 -0.10 11.77 16 10 O -0.57 -12.48 14.72 5.19 0.08 -12.41 16 11 N -0.68 -13.52 4.70 -61.62 -0.29 -13.81 16 12 C 0.13 2.54 4.53 -4.04 -0.02 2.52 16 13 C 0.17 3.23 2.19 -67.97 -0.15 3.08 16 14 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 15 C -0.14 -2.27 5.06 -28.58 -0.14 -2.41 16 16 C -0.10 -1.56 5.16 -29.79 -0.15 -1.72 16 17 C -0.11 -1.79 5.51 -28.02 -0.15 -1.94 16 18 C -0.14 -2.51 5.71 -27.30 -0.16 -2.66 16 19 C 0.18 3.87 4.67 -2.94 -0.01 3.85 16 20 N -0.58 -12.54 1.77 -164.46 -0.29 -12.83 16 21 C -0.25 -6.18 7.62 -15.06 -0.11 -6.30 16 22 H 0.06 1.59 6.74 -52.48 -0.35 1.23 16 23 C 0.02 0.41 4.83 -17.43 -0.08 0.33 16 24 N -0.90 -23.52 11.19 55.49 0.62 -22.90 16 25 Si 0.89 21.50 29.59 -169.99 -5.03 16.47 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.10 0.80 7.84 -52.49 -0.41 0.39 16 31 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.09 0.92 7.76 -51.93 -0.40 0.52 16 33 H 0.11 1.78 6.74 -51.93 -0.35 1.43 16 34 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.15 2.70 7.45 -52.49 -0.39 2.31 16 37 H 0.41 8.61 6.98 -40.82 -0.28 8.33 16 38 H 0.07 1.48 6.83 -51.93 -0.35 1.12 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.72 8.11 -51.93 -0.42 0.29 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.69 7.35 -51.93 -0.38 0.31 16 44 H 0.07 1.44 7.48 -51.93 -0.39 1.05 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.04 0.73 7.31 -51.93 -0.38 0.35 16 48 H 0.07 1.75 6.48 -51.93 -0.34 1.41 16 49 H 0.02 0.56 8.02 -51.93 -0.42 0.15 16 50 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -27.60 392.74 -10.19 -37.78 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -8.23 Total: 11.85 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -2.65 Total: -3.24 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.27 Total: -56.37 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -27.60 -10.19 -37.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.249 kcal (2) G-P(sol) polarization free energy of solvation -27.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds