Wall clock time and date at job start Sat Apr 11 2020 02:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00191 * 2 1 4 4 N 1.46494 * 109.46956 * 124.99978 * 3 2 1 5 5 C 1.35538 * 125.68158 * 261.21329 * 4 3 2 6 6 C 1.35451 * 108.87011 * 180.26797 * 5 4 3 7 7 C 1.39830 * 107.86690 * 359.77023 * 6 5 4 8 8 C 1.37649 * 125.67550 * 81.08880 * 4 3 2 9 9 C 1.46672 * 126.23516 * 359.97438 * 8 4 3 10 10 O 1.21696 * 119.99911 * 4.85905 * 9 8 4 11 11 N 1.34781 * 120.00336 * 184.85825 * 9 8 4 12 12 C 1.46502 * 120.00021 * 174.92441 * 11 9 8 13 13 C 1.53000 * 109.46914 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.43160 * 64.93280 * 13 12 11 15 15 C 1.54868 * 109.44979 * 184.86826 * 13 12 11 16 16 C 1.47098 * 110.32372 * 191.28955 * 15 13 12 17 17 C 1.52567 * 114.32748 * 297.19305 * 16 15 13 18 18 C 1.50880 * 109.35055 * 85.02378 * 17 16 15 19 19 C 1.53949 * 110.09442 * 268.10944 * 18 17 16 20 20 N 1.44582 * 109.44797 * 304.99629 * 13 12 11 21 21 C 1.36939 * 118.64449 * 329.27053 * 20 13 12 22 22 H 1.08004 * 119.99741 * 331.96674 * 21 20 13 23 23 C 1.38809 * 120.00539 * 151.96579 * 21 20 13 24 24 N 1.31619 * 119.99563 * 343.35297 * 23 21 20 25 25 Si 1.86795 * 120.00294 * 163.35377 * 23 21 20 26 26 H 1.48501 * 109.46869 * 94.98753 * 25 23 21 27 27 H 1.48496 * 109.47336 * 214.98684 * 25 23 21 28 28 H 1.48502 * 109.47320 * 334.98846 * 25 23 21 29 29 H 1.07999 * 119.99790 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99746 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99746 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46753 * 5.00259 * 3 2 1 33 33 H 1.09000 * 109.47387 * 245.00564 * 3 2 1 34 34 H 1.07994 * 125.55959 * 0.02562 * 5 4 3 35 35 H 1.07998 * 126.06095 * 179.79019 * 6 5 4 36 36 H 1.08001 * 126.45763 * 179.97438 * 7 6 5 37 37 H 0.97001 * 119.99628 * 354.92944 * 11 9 8 38 38 H 1.08991 * 109.47315 * 60.00191 * 12 11 9 39 39 H 1.09003 * 109.47148 * 299.99806 * 12 11 9 40 40 H 1.08998 * 109.32517 * 311.54963 * 15 13 12 41 41 H 1.09003 * 109.32861 * 71.02821 * 15 13 12 42 42 H 1.08994 * 108.50937 * 175.93781 * 16 15 13 43 43 H 1.09002 * 108.38567 * 58.35175 * 16 15 13 44 44 H 1.09001 * 109.49366 * 325.06157 * 17 16 15 45 45 H 1.08999 * 109.51017 * 205.00326 * 17 16 15 46 46 H 1.09001 * 109.36328 * 147.92282 * 18 17 16 47 47 H 1.09001 * 109.26484 * 28.23969 * 18 17 16 48 48 H 1.08998 * 108.94377 * 279.87846 * 19 18 17 49 49 H 1.09003 * 108.87391 * 161.20104 * 19 18 17 50 50 H 0.97001 * 119.99874 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.7754 1.9452 2.3201 6 6 3.8575 1.7608 3.1136 7 6 4.7881 0.9993 2.3999 8 6 4.2342 0.7360 1.1651 9 6 4.8558 -0.0339 0.0825 10 8 4.3035 -0.1190 -0.9986 11 7 6.0389 -0.6472 0.2848 12 6 6.6061 -1.5068 -0.7572 13 6 7.9428 -2.0758 -0.2772 14 1 7.7722 -2.7305 0.5774 15 6 8.6004 -2.8840 -1.4229 16 6 9.7421 -3.6581 -0.9120 17 6 10.8773 -2.8075 -0.3504 18 6 10.5827 -2.4689 1.0901 19 6 9.8316 -1.1277 1.1753 20 7 8.8151 -0.9911 0.1138 21 6 8.6929 0.2131 -0.5267 22 1 8.3317 0.2494 -1.5439 23 6 9.0331 1.3870 0.1313 24 7 9.1551 1.3952 1.4418 25 14 9.3177 2.9551 -0.8430 26 1 8.0654 3.7527 -0.8740 27 1 10.3946 3.7494 -0.1992 28 1 9.7192 2.6099 -2.2305 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.8856 2.4950 2.5890 35 1 3.9796 2.1351 4.1193 36 1 5.7581 0.6784 2.7497 37 1 6.5146 -0.5195 1.1204 38 1 6.7640 -0.9228 -1.6638 39 1 5.9177 -2.3253 -0.9675 40 1 7.8655 -3.5653 -1.8516 41 1 8.9466 -2.1979 -2.1959 42 1 10.1366 -4.2694 -1.7236 43 1 9.3835 -4.3204 -0.1241 44 1 10.9639 -1.8882 -0.9296 45 1 11.8127 -3.3639 -0.4093 46 1 11.5193 -2.3943 1.6427 47 1 9.9675 -3.2561 1.5261 48 1 10.5502 -0.3133 1.0842 49 1 9.3409 -1.0594 2.1462 50 1 9.3932 2.2154 1.9016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968890577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:50 Heat of formation + Delta-G solvation = 38.344062 kcal Electronic energy + Delta-G solvation = -29974.465083 eV Core-core repulsion = 26195.963218 eV Total energy + Delta-G solvation = -3778.501865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.28634 -40.33611 -39.29151 -36.32806 -35.83629 -35.18202 -33.34481 -32.47446 -32.17770 -30.44074 -28.41614 -27.15741 -26.95740 -25.20189 -24.19705 -22.82686 -21.46805 -21.27460 -21.12361 -20.77296 -20.18514 -18.95666 -17.90968 -17.25083 -16.97858 -16.54395 -16.42642 -16.07556 -15.93258 -15.63335 -15.24003 -15.20095 -14.88068 -14.69164 -14.36772 -14.29146 -13.94640 -13.68963 -13.53570 -13.38458 -13.17804 -13.14131 -12.90968 -12.82706 -12.78353 -12.70316 -12.37773 -12.18891 -12.00699 -11.54292 -11.39079 -11.31047 -11.19203 -11.09579 -10.84620 -10.49397 -10.34236 -9.86562 -9.65195 -9.06913 -8.52954 -7.78598 -5.20012 0.57774 1.09762 1.38456 1.44567 1.48786 1.88602 1.95284 2.49186 2.53781 2.68670 3.36737 3.61108 3.75392 3.89642 3.96379 4.04981 4.09488 4.21514 4.28529 4.29778 4.43736 4.50663 4.53091 4.58066 4.61808 4.63243 4.66985 4.80599 4.94409 5.02006 5.08261 5.14294 5.21288 5.26310 5.27405 5.33149 5.39211 5.43818 5.56374 5.56738 5.62349 5.66950 5.70304 5.77136 5.80670 5.90376 5.91491 6.03909 6.42392 6.48837 6.76292 7.28660 7.35832 8.02429 8.40875 9.25162 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.004219 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.721921 B = 6635.399100 C = 7635.768970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.186 4.186 3 C 0.130 3.870 4 N -0.412 5.412 5 C 0.027 3.973 6 C -0.222 4.222 7 C -0.142 4.142 8 C -0.078 4.078 9 C 0.576 3.424 10 O -0.596 6.596 11 N -0.680 5.680 12 C 0.137 3.863 13 C 0.173 3.827 14 H 0.056 0.944 15 C -0.127 4.127 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.132 4.132 19 C 0.190 3.810 20 N -0.587 5.587 21 C -0.234 4.234 22 H 0.045 0.955 23 C -0.022 4.022 24 N -0.912 5.912 25 Si 0.926 3.074 26 H -0.304 1.304 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.210 0.790 35 H 0.161 0.839 36 H 0.131 0.869 37 H 0.409 0.591 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.037 0.963 49 H 0.002 0.998 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.465 -5.553 2.084 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.205 4.205 3 C 0.010 3.990 4 N -0.085 5.085 5 C -0.108 4.108 6 C -0.246 4.246 7 C -0.169 4.169 8 C -0.191 4.191 9 C 0.365 3.635 10 O -0.481 6.481 11 N -0.327 5.327 12 C 0.012 3.988 13 C 0.065 3.935 14 H 0.074 0.926 15 C -0.167 4.167 16 C -0.138 4.138 17 C -0.141 4.141 18 C -0.171 4.171 19 C 0.065 3.935 20 N -0.309 5.309 21 C -0.365 4.365 22 H 0.063 0.937 23 C -0.219 4.219 24 N -0.558 5.558 25 Si 0.757 3.243 26 H -0.232 1.232 27 H -0.218 1.218 28 H -0.206 1.206 29 H 0.132 0.868 30 H 0.143 0.857 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.099 0.901 34 H 0.226 0.774 35 H 0.179 0.821 36 H 0.149 0.851 37 H 0.245 0.755 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.055 0.945 49 H 0.020 0.980 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.980 -5.561 1.129 13.256 hybrid contribution 0.956 1.365 -0.240 1.684 sum -11.024 -4.196 0.889 11.829 Atomic orbital electron populations 1.24113 0.94209 1.03937 0.96305 1.22876 0.96790 0.97182 1.03635 1.21168 0.91584 0.98144 0.88074 1.44143 1.12391 1.38624 1.13319 1.22627 1.02141 1.01645 0.84389 1.21097 0.94715 1.06776 1.01969 1.21540 1.00052 1.02205 0.93072 1.20063 0.90622 1.10671 0.97759 1.17280 0.81425 0.78708 0.86121 1.90674 1.65482 1.64953 1.26983 1.45411 1.19444 1.47165 1.20709 1.21474 0.94609 0.92281 0.90434 1.20682 0.87527 0.89621 0.95631 0.92627 1.21276 0.98337 0.98683 0.98453 1.20274 0.95221 0.97700 1.00564 1.20907 0.97901 0.99299 0.95993 1.21940 0.99831 0.98253 0.97075 1.20766 0.89837 0.93919 0.88949 1.43749 1.36935 1.07977 1.42243 1.18895 1.39089 0.84357 0.94120 0.93696 1.25200 1.02794 0.98453 0.95449 1.70103 1.53045 1.26466 1.06207 0.85913 0.76611 0.82694 0.79051 1.23186 1.21752 1.20633 0.86762 0.85710 0.89865 0.85412 0.90102 0.77355 0.82107 0.85128 0.75504 0.93996 0.91590 0.90888 0.93971 0.91874 0.92012 0.93953 0.91766 0.92007 0.92200 0.94452 0.97982 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 14.32 67.78 0.97 -1.54 16 2 C -0.19 -4.63 9.68 25.64 0.25 -4.38 16 3 C 0.13 3.44 5.83 85.63 0.50 3.94 16 4 N -0.41 -12.81 2.75 -515.09 -1.42 -14.22 16 5 C 0.03 0.69 11.36 83.48 0.95 1.63 16 6 C -0.22 -6.46 10.81 22.01 0.24 -6.22 16 7 C -0.14 -5.21 10.35 22.57 0.23 -4.97 16 8 C -0.08 -3.03 6.88 40.35 0.28 -2.75 16 9 C 0.58 24.78 7.77 86.44 0.67 25.45 16 10 O -0.60 -27.38 14.72 -4.33 -0.06 -27.44 16 11 N -0.68 -28.64 4.70 -467.08 -2.20 -30.84 16 12 C 0.14 5.41 4.53 86.38 0.39 5.80 16 13 C 0.17 6.46 2.19 45.99 0.10 6.56 16 14 H 0.06 1.98 8.06 -2.39 -0.02 1.96 16 15 C -0.13 -4.07 5.06 29.40 0.15 -3.92 16 16 C -0.10 -2.83 5.16 28.62 0.15 -2.69 16 17 C -0.10 -3.28 5.51 29.76 0.16 -3.12 16 18 C -0.13 -4.47 5.71 30.23 0.17 -4.29 16 19 C 0.19 8.31 4.67 86.49 0.40 8.72 16 20 N -0.59 -25.94 1.77 -674.22 -1.20 -27.14 16 21 C -0.23 -11.95 7.62 84.03 0.64 -11.31 16 22 H 0.05 2.45 6.74 -2.91 -0.02 2.43 16 23 C -0.02 -1.18 4.83 84.86 0.41 -0.77 16 24 N -0.91 -49.88 11.19 21.65 0.24 -49.64 16 25 Si 0.93 45.75 29.59 68.60 2.03 47.78 16 26 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 27 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 28 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 29 H 0.11 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.12 1.45 7.84 -2.91 -0.02 1.42 16 31 H 0.08 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.13 2.25 7.76 -2.38 -0.02 2.23 16 33 H 0.08 2.64 6.74 -2.39 -0.02 2.62 16 34 H 0.21 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.13 5.12 7.45 -2.91 -0.02 5.10 16 37 H 0.41 18.03 6.98 -92.71 -0.65 17.38 16 38 H 0.04 1.88 6.83 -2.39 -0.02 1.86 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.07 2.00 8.11 -2.39 -0.02 1.98 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.06 1.60 7.35 -2.39 -0.02 1.59 16 44 H 0.04 1.62 7.48 -2.39 -0.02 1.60 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.06 1.85 7.31 -2.39 -0.02 1.83 16 48 H 0.04 1.88 6.48 -2.39 -0.02 1.86 16 49 H 0.00 0.10 8.02 -2.39 -0.02 0.08 16 50 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -64.47 392.74 4.34 -60.13 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.27 Total: 35.23 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 6.67 Total: 6.14 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -4.57 Total: -121.84 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.06 Total: -27.44 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -64.47 4.34 -60.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.472 kcal (2) G-P(sol) polarization free energy of solvation -64.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds