Wall clock time and date at job start Sat Apr 11 2020 02:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46944 * 2 1 4 4 C 1.50698 * 109.47378 * 119.99163 * 2 1 3 5 5 N 1.34665 * 125.80555 * 299.70176 * 4 2 1 6 6 H 0.96996 * 124.84385 * 0.23238 * 5 4 2 7 7 C 1.36442 * 110.29898 * 180.26090 * 5 4 2 8 8 C 1.34487 * 108.85726 * 359.97438 * 7 5 4 9 9 C 1.36775 * 125.80129 * 120.00017 * 4 2 1 10 10 C 1.47262 * 126.94086 * 359.74143 * 9 4 2 11 11 O 1.21636 * 119.99988 * 0.02562 * 10 9 4 12 12 N 1.34774 * 120.00164 * 179.97438 * 10 9 4 13 13 C 1.46500 * 119.99981 * 179.97438 * 12 10 9 14 14 H 1.09006 * 112.88568 * 25.33464 * 13 12 10 15 15 C 1.53944 * 113.66780 * 253.98753 * 13 12 10 16 16 C 1.54135 * 87.23024 * 220.83052 * 15 13 12 17 17 H 1.09001 * 113.72718 * 139.15281 * 16 15 13 18 18 N 1.46507 * 113.66147 * 270.17004 * 16 15 13 19 19 C 1.36940 * 119.99742 * 252.22352 * 18 16 15 20 20 H 1.08001 * 120.00156 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99678 * 179.97438 * 19 18 16 22 22 N 1.31623 * 120.00030 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99886 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47313 * 90.00072 * 23 21 19 25 25 H 1.48503 * 109.47219 * 210.00204 * 23 21 19 26 26 H 1.48498 * 109.47155 * 330.00234 * 23 21 19 27 27 C 1.52909 * 86.81636 * 24.65589 * 16 15 13 28 28 C 1.52902 * 121.13902 * 100.90017 * 27 16 15 29 29 C 1.53952 * 86.78428 * 100.81988 * 28 27 16 30 30 C 1.52913 * 121.13771 * 209.46346 * 27 16 15 31 31 H 1.09002 * 109.46514 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46868 * 300.00023 * 1 2 3 33 33 H 1.08997 * 109.47012 * 60.00575 * 1 2 3 34 34 H 1.08995 * 109.47476 * 239.99971 * 2 1 3 35 35 H 1.08997 * 109.47483 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.47014 * 299.99950 * 3 2 1 37 37 H 1.09001 * 109.47728 * 59.99606 * 3 2 1 38 38 H 1.08005 * 125.57144 * 180.02562 * 7 5 4 39 39 H 1.08007 * 126.83002 * 180.02562 * 8 7 5 40 40 H 0.96996 * 119.99892 * 0.02562 * 12 10 9 41 41 H 1.09009 * 113.57411 * 335.40426 * 15 13 12 42 42 H 1.08997 * 113.58193 * 106.18662 * 15 13 12 43 43 H 0.96998 * 119.99742 * 72.21941 * 18 16 15 44 44 H 0.97003 * 119.99902 * 180.02562 * 22 21 19 45 45 H 1.08997 * 113.66733 * 215.29318 * 28 27 16 46 46 H 1.09004 * 113.65963 * 346.35186 * 28 27 16 47 47 H 1.09000 * 113.58424 * 270.13015 * 29 28 27 48 48 H 1.09000 * 113.57751 * 139.33619 * 29 28 27 49 49 H 1.08998 * 113.66033 * 13.65048 * 30 27 16 50 50 H 1.09004 * 113.66205 * 144.70455 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7102 1.2305 5 7 1.7849 -0.3501 2.5043 6 1 1.2476 0.4125 2.7702 7 6 2.3983 -1.2106 3.3673 8 6 3.0544 -2.1449 2.6564 9 6 2.8221 -1.8269 1.2435 10 6 3.3350 -2.5617 0.0749 11 8 3.0622 -2.1841 -1.0487 12 7 4.1076 -3.6520 0.2504 13 6 4.6174 -4.3833 -0.9121 14 1 4.6973 -3.7605 -1.8031 15 6 3.9054 -5.7258 -1.1586 16 6 5.2913 -6.3151 -1.4870 17 1 5.4504 -7.3142 -1.0813 18 7 5.6543 -6.2106 -2.9025 19 6 5.6659 -7.3303 -3.6908 20 1 5.4070 -8.2903 -3.2692 21 6 6.0093 -7.2311 -5.0321 22 7 6.3243 -6.0610 -5.5460 23 14 6.0244 -8.7583 -6.1077 24 1 4.6848 -8.9454 -6.7206 25 1 7.0410 -8.5996 -7.1785 26 1 6.3594 -9.9441 -5.2789 27 6 5.8765 -5.2002 -0.6194 28 6 6.3279 -5.4699 0.8163 29 6 7.7642 -5.5165 0.2640 30 6 7.2693 -4.6323 -0.8950 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9565 0.8899 38 1 2.3622 -1.1516 4.4451 39 1 3.6367 -2.9660 3.0481 40 1 4.3254 -3.9529 1.1464 41 1 3.4524 -6.1500 -0.2625 42 1 3.2249 -5.7086 -2.0099 43 1 5.8864 -5.3483 -3.2812 44 1 6.5639 -5.9917 -6.4835 45 1 6.1473 -4.6368 1.4956 46 1 5.9804 -6.4242 1.2122 47 1 8.0785 -6.5117 -0.0503 48 1 8.4946 -5.0246 0.9065 49 1 7.6736 -4.9174 -1.8663 50 1 7.3531 -3.5637 -0.6968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078705321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:35 Heat of formation + Delta-G solvation = 51.075674 kcal Electronic energy + Delta-G solvation = -28950.478996 eV Core-core repulsion = 25172.529216 eV Total energy + Delta-G solvation = -3777.949781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47589 -40.33530 -38.27959 -35.40584 -34.90294 -33.84456 -32.33072 -31.00160 -29.48423 -28.65515 -27.37150 -25.44117 -24.84374 -24.08167 -23.28767 -22.08505 -21.61698 -20.50944 -20.19849 -19.44583 -17.68327 -17.56694 -16.94938 -16.12047 -15.70669 -15.08311 -14.93926 -14.74062 -14.65248 -14.36057 -14.10039 -13.92698 -13.76419 -13.31862 -13.08382 -12.96124 -12.71683 -12.50297 -12.44461 -12.37916 -12.06612 -11.82710 -11.55151 -11.37583 -11.30913 -11.25783 -10.99223 -10.83847 -10.78101 -10.63622 -10.12390 -9.97103 -9.70490 -9.62883 -9.43539 -9.29589 -8.97952 -8.80359 -8.47342 -8.23849 -6.93702 -5.74106 -3.03412 1.77469 2.30728 2.97312 3.46431 3.51347 3.53039 3.72160 3.76264 4.47356 4.57242 4.72034 4.83992 4.87409 4.97390 5.00458 5.06069 5.16442 5.26806 5.28878 5.30149 5.32920 5.43616 5.55453 5.57218 5.60466 5.69995 5.74268 5.83350 5.89479 5.95057 6.01425 6.04446 6.05669 6.10029 6.15492 6.19829 6.22663 6.38664 6.55170 6.62306 6.65909 6.79363 6.82543 6.85112 6.92218 6.98938 7.21374 7.27919 7.74066 7.97954 8.44185 8.68377 9.55196 10.12270 10.46980 11.47971 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.002927 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.090987 B = 9563.527827 C =10674.315555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.143 4.143 4 C 0.115 3.885 5 N -0.552 5.552 6 H 0.413 0.587 7 C -0.020 4.020 8 C -0.169 4.169 9 C -0.229 4.229 10 C 0.586 3.414 11 O -0.550 6.550 12 N -0.710 5.710 13 C 0.142 3.858 14 H 0.112 0.888 15 C -0.182 4.182 16 C 0.197 3.803 17 H 0.067 0.933 18 N -0.700 5.700 19 C -0.242 4.242 20 H 0.072 0.928 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.124 4.124 28 C -0.115 4.115 29 C -0.133 4.133 30 C -0.125 4.125 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.129 0.871 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.167 0.833 39 H 0.143 0.857 40 H 0.394 0.606 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.082 0.918 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.598 12.627 21.122 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.003 4.003 5 N -0.147 5.147 6 H 0.249 0.751 7 C -0.148 4.148 8 C -0.193 4.193 9 C -0.239 4.239 10 C 0.374 3.626 11 O -0.429 6.429 12 N -0.359 5.359 13 C 0.038 3.962 14 H 0.130 0.870 15 C -0.224 4.224 16 C 0.084 3.916 17 H 0.085 0.915 18 N -0.338 5.338 19 C -0.373 4.373 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.127 4.127 28 C -0.153 4.153 29 C -0.171 4.171 30 C -0.163 4.163 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.184 0.816 39 H 0.161 0.839 40 H 0.229 0.771 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.222 0.778 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.076 0.924 49 H 0.101 0.899 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.819 12.791 20.253 25.198 hybrid contribution -0.124 -0.283 0.071 0.317 sum -7.942 12.507 20.324 25.151 Atomic orbital electron populations 1.21822 0.94372 1.02316 1.01533 1.20274 0.95655 0.95843 0.95534 1.21823 1.01747 0.94925 1.01549 1.20277 0.98686 0.95911 0.85380 1.41515 1.42114 1.25586 1.05463 0.75125 1.21664 1.02785 0.94632 0.95669 1.22018 1.04554 1.01189 0.91553 1.20257 1.09545 1.00921 0.93201 1.17394 0.77840 0.79746 0.87582 1.90703 1.59254 1.67934 1.25027 1.45819 1.51585 1.28551 1.09909 1.22343 0.93770 0.91324 0.88754 0.86983 1.24314 1.00655 0.96546 1.00918 1.20673 0.90938 0.94385 0.85650 0.91506 1.42110 1.79989 1.08755 1.02954 1.19253 1.39106 0.88041 0.90938 0.91028 1.24753 1.02147 0.96743 0.97050 1.69672 1.52414 1.22264 1.13330 0.86190 0.77263 0.82319 0.80391 1.21706 1.21819 1.20757 1.23595 0.93326 0.98991 0.96767 1.22522 0.96866 1.00968 0.94950 1.22738 0.95584 1.00752 0.98008 1.22625 0.95693 0.98156 0.99800 0.92133 0.93598 0.91684 0.85312 0.92155 0.91683 0.93591 0.81577 0.83916 0.77089 0.91348 0.91013 0.77838 0.93435 0.90714 0.91501 0.90110 0.92365 0.89948 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.18 37.16 0.34 -0.95 16 2 C -0.05 -0.60 3.24 -91.77 -0.30 -0.89 16 3 C -0.14 -1.28 9.17 37.16 0.34 -0.94 16 4 C 0.12 1.31 5.68 -81.88 -0.47 0.85 16 5 N -0.55 -4.46 5.90 -9.10 -0.05 -4.51 16 6 H 0.41 2.11 8.96 -40.82 -0.37 1.74 16 7 C -0.02 -0.16 11.89 -16.83 -0.20 -0.36 16 8 C -0.17 -1.72 10.56 -37.50 -0.40 -2.12 16 9 C -0.23 -3.05 6.29 -103.35 -0.65 -3.70 16 10 C 0.59 9.62 7.81 -12.59 -0.10 9.52 16 11 O -0.55 -10.91 14.09 5.25 0.07 -10.84 16 12 N -0.71 -10.59 5.27 -54.49 -0.29 -10.88 16 13 C 0.14 2.51 4.01 -67.48 -0.27 2.24 16 14 H 0.11 2.37 7.50 -51.93 -0.39 1.98 16 15 C -0.18 -3.38 7.70 -25.65 -0.20 -3.58 16 16 C 0.20 3.93 4.36 -67.38 -0.29 3.64 16 17 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 18 N -0.70 -17.50 4.85 -52.89 -0.26 -17.75 16 19 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 23 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C -0.12 -2.05 0.92 -154.71 -0.14 -2.19 16 28 C -0.12 -1.51 7.15 -26.29 -0.19 -1.69 16 29 C -0.13 -1.87 8.08 -25.75 -0.21 -2.08 16 30 C -0.13 -2.09 7.62 -26.28 -0.20 -2.29 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.13 1.87 5.50 -51.93 -0.29 1.58 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.14 1.18 7.70 -52.48 -0.40 0.78 16 40 H 0.39 4.83 6.10 -40.82 -0.25 4.59 16 41 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 42 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.39 10.41 7.61 -40.82 -0.31 10.10 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.07 0.84 6.99 -51.93 -0.36 0.48 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 50 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 401.13 15.07 6.04 6.04 Total: -1.00 -32.86 401.13 -10.17 -43.04 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -8.22 Total: 16.70 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -3.17 Total: -11.80 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.13 Total: -60.62 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.07 Total: -10.84 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.86 -10.17 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078705321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.111 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds