Wall clock time and date at job start Sat Apr 11 2020 02:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47172 * 2 1 4 4 C 1.50695 * 109.47090 * 119.99858 * 2 1 3 5 5 N 1.34654 * 125.80671 * 299.97433 * 4 2 1 6 6 H 0.97008 * 124.84755 * 0.02562 * 5 4 2 7 7 C 1.36445 * 110.30467 * 180.02562 * 5 4 2 8 8 C 1.34491 * 108.85130 * 359.71510 * 7 5 4 9 9 C 1.36772 * 125.80090 * 120.00421 * 4 2 1 10 10 C 1.47260 * 126.94015 * 359.97438 * 9 4 2 11 11 O 1.21629 * 120.00344 * 0.02562 * 10 9 4 12 12 N 1.34783 * 120.00089 * 180.02562 * 10 9 4 13 13 C 1.46498 * 120.00137 * 180.02562 * 12 10 9 14 14 C 1.54357 * 112.32704 * 299.33737 * 13 12 10 15 15 C 1.55059 * 103.91999 * 262.35087 * 14 13 12 16 16 C 1.55057 * 102.14033 * 319.99071 * 15 14 13 17 17 C 1.54316 * 103.93566 * 40.03914 * 16 15 14 18 18 H 1.08999 * 111.69220 * 98.07771 * 17 16 15 19 19 C 1.53784 * 109.06273 * 222.03459 * 17 16 15 20 20 N 1.47206 * 106.38211 * 94.89161 * 19 17 16 21 21 C 1.36931 * 126.70268 * 211.27912 * 20 19 17 22 22 H 1.08007 * 120.00089 * 180.02562 * 21 20 19 23 23 C 1.38810 * 120.00455 * 0.03075 * 21 20 19 24 24 N 1.31623 * 119.99560 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00499 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46831 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47205 * 119.99547 * 25 23 21 28 28 H 1.48496 * 109.46994 * 240.00006 * 25 23 21 29 29 C 1.47219 * 106.59417 * 31.28205 * 20 19 17 30 30 H 1.08997 * 109.46990 * 59.99980 * 1 2 3 31 31 H 1.09001 * 109.46785 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47325 * 300.00098 * 1 2 3 33 33 H 1.09004 * 109.47367 * 240.00672 * 2 1 3 34 34 H 1.08995 * 109.47325 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47179 * 299.99904 * 3 2 1 36 36 H 1.09001 * 109.47075 * 59.99749 * 3 2 1 37 37 H 1.08001 * 125.57763 * 180.02562 * 7 5 4 38 38 H 1.07997 * 126.83079 * 180.26845 * 8 7 5 39 39 H 0.97001 * 119.99969 * 0.02562 * 12 10 9 40 40 H 1.08995 * 110.51616 * 143.75679 * 14 13 12 41 41 H 1.09002 * 110.56650 * 20.96803 * 14 13 12 42 42 H 1.09002 * 110.90474 * 201.76877 * 15 14 13 43 43 H 1.09003 * 110.90440 * 78.21099 * 15 14 13 44 44 H 1.08998 * 110.53091 * 158.65723 * 16 15 14 45 45 H 1.09006 * 110.52871 * 281.42660 * 16 15 14 46 46 H 1.08998 * 110.07087 * 214.12430 * 19 17 16 47 47 H 1.09003 * 110.07470 * 335.65961 * 19 17 16 48 48 H 0.97001 * 120.00138 * 180.02562 * 24 23 21 49 49 H 1.09006 * 110.06829 * 87.94662 * 29 20 19 50 50 H 1.09001 * 110.07247 * 209.42821 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7805 -0.3534 2.5042 6 1 1.2419 0.4084 2.7702 7 6 2.3910 -1.2161 3.3672 8 6 3.0447 -2.1520 2.6562 9 6 2.8219 -1.8270 1.2433 10 6 3.3389 -2.5588 0.0746 11 8 3.0699 -2.1785 -1.0489 12 7 4.1101 -3.6502 0.2500 13 6 4.6249 -4.3779 -0.9126 14 6 3.4941 -4.9342 -1.8039 15 6 3.3558 -6.4112 -1.3527 16 6 4.8350 -6.8307 -1.1516 17 6 5.4853 -5.5957 -0.4934 18 1 5.5536 -5.7051 0.5889 19 6 6.8649 -5.3558 -1.1291 20 7 6.6622 -4.3665 -2.2002 21 6 7.3672 -4.2710 -3.3701 22 1 7.1259 -3.4977 -4.0845 23 6 8.3921 -5.1680 -3.6382 24 7 8.6865 -6.1102 -2.7675 25 14 9.3544 -5.0373 -5.2339 26 1 8.8318 -3.9017 -6.0354 27 1 10.7898 -4.8095 -4.9291 28 1 9.2061 -6.2971 -6.0060 29 6 5.5534 -3.4999 -1.7678 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 3.1299 1.4426 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.3512 -1.1598 4.4450 38 1 3.6213 -2.9769 3.0477 39 1 4.3244 -3.9538 1.1461 40 1 3.7753 -4.8804 -2.8556 41 1 2.5653 -4.3918 -1.6272 42 1 2.8831 -7.0125 -2.1293 43 1 2.8009 -6.4817 -0.4171 44 1 4.9007 -7.6952 -0.4911 45 1 5.3054 -7.0447 -2.1114 46 1 7.5571 -4.9639 -0.3839 47 1 7.2512 -6.2856 -1.5467 48 1 9.4028 -6.7369 -2.9546 49 1 5.9368 -2.6707 -1.1730 50 1 5.0153 -3.1197 -2.6361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098988721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:20 Heat of formation + Delta-G solvation = 22.661479 kcal Electronic energy + Delta-G solvation = -29818.328597 eV Core-core repulsion = 26039.146684 eV Total energy + Delta-G solvation = -3779.181912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40689 -39.78565 -37.67628 -35.32939 -34.27909 -33.14945 -31.42688 -30.94115 -29.27700 -28.61828 -27.52380 -27.33671 -24.50666 -24.49641 -22.95445 -21.82603 -20.64809 -20.44907 -20.28500 -18.68197 -18.58047 -17.50761 -16.97304 -15.71248 -15.42925 -14.90120 -14.74464 -14.61214 -14.37612 -14.26156 -13.83656 -13.64173 -13.40082 -13.26530 -13.22787 -13.03880 -12.95162 -12.57166 -12.44880 -12.39369 -11.75232 -11.33754 -11.28878 -11.14737 -10.95543 -10.92189 -10.85046 -10.53113 -10.43927 -10.18523 -10.08778 -9.94917 -9.82216 -9.79754 -9.58326 -9.16411 -8.89665 -8.63416 -8.44312 -8.19587 -6.76375 -5.56882 -3.00560 1.85320 2.38667 3.03811 3.44635 3.50459 3.52943 3.77611 3.87380 4.52572 4.56123 4.76526 4.90628 5.01457 5.02265 5.25842 5.28442 5.33078 5.36355 5.37414 5.49147 5.57352 5.60160 5.66519 5.76449 5.77939 5.86838 5.96068 6.00708 6.04569 6.08423 6.13918 6.23878 6.26273 6.28742 6.40424 6.48431 6.58447 6.69748 6.72429 6.75625 6.88980 6.94520 6.99984 7.07360 7.31093 7.36211 7.52455 7.71129 7.90980 8.09675 8.48300 8.79867 9.29535 9.89997 10.58062 11.44485 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.016278 B = 0.003290 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.680342 B = 8509.545298 C = 9123.870309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C -0.143 4.143 4 C 0.113 3.887 5 N -0.552 5.552 6 H 0.412 0.588 7 C -0.021 4.021 8 C -0.168 4.168 9 C -0.227 4.227 10 C 0.589 3.411 11 O -0.545 6.545 12 N -0.705 5.705 13 C 0.162 3.838 14 C -0.109 4.109 15 C -0.125 4.125 16 C -0.108 4.108 17 C -0.115 4.115 18 H 0.068 0.932 19 C 0.139 3.861 20 N -0.594 5.594 21 C -0.211 4.211 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.141 3.859 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.130 0.870 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.166 0.834 38 H 0.144 0.856 39 H 0.394 0.606 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.080 0.920 46 H 0.002 0.998 47 H 0.129 0.871 48 H 0.251 0.749 49 H 0.014 0.986 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.520 8.481 13.268 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.004 4.004 5 N -0.147 5.147 6 H 0.248 0.752 7 C -0.149 4.149 8 C -0.192 4.192 9 C -0.237 4.237 10 C 0.377 3.623 11 O -0.425 6.425 12 N -0.354 5.354 13 C 0.075 3.925 14 C -0.148 4.148 15 C -0.163 4.163 16 C -0.146 4.146 17 C -0.135 4.135 18 H 0.087 0.913 19 C 0.014 3.986 20 N -0.318 5.318 21 C -0.339 4.339 22 H 0.096 0.904 23 C -0.209 4.209 24 N -0.572 5.572 25 Si 0.745 3.255 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 C 0.014 3.986 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.147 0.853 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.184 0.816 38 H 0.161 0.839 39 H 0.228 0.772 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.020 0.980 47 H 0.146 0.854 48 H 0.062 0.938 49 H 0.031 0.969 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.561 8.742 12.378 22.448 hybrid contribution 0.464 0.318 0.237 0.611 sum -16.097 9.061 12.616 22.369 Atomic orbital electron populations 1.21818 0.94507 1.02185 1.01471 1.20261 0.95473 0.95855 0.95596 1.21824 1.01884 0.94933 1.01444 1.20248 0.98833 0.96000 0.85350 1.41505 1.42146 1.25609 1.05476 0.75196 1.21657 1.03039 0.94522 0.95641 1.22044 1.04437 1.01134 0.91612 1.20272 1.09367 1.00844 0.93244 1.17295 0.77744 0.79667 0.87587 1.90676 1.59569 1.67410 1.24835 1.45814 1.51756 1.28520 1.09319 1.21742 0.93403 0.92005 0.85372 1.22621 0.97836 0.94648 0.99692 1.22602 0.97123 0.96599 0.99949 1.22440 0.94388 0.96303 1.01448 1.23017 0.98803 0.93078 0.98620 0.91323 1.22027 0.89436 0.98163 0.89012 1.44469 1.36234 1.32627 1.18435 1.19164 1.09895 1.11351 0.93504 0.90350 1.24743 0.99242 0.98248 0.98642 1.69608 1.32908 1.20011 1.34707 0.85988 0.79609 0.77236 0.82674 1.20551 1.21870 1.21811 1.21543 0.88875 0.92224 0.95986 0.91785 0.92217 0.93630 0.85266 0.92059 0.91762 0.93646 0.81627 0.83871 0.77166 0.90504 0.91713 0.92296 0.92573 0.92698 0.90179 0.98006 0.85398 0.93835 0.96878 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.17 37.16 0.34 -0.93 16 2 C -0.05 -0.59 3.24 -91.77 -0.30 -0.89 16 3 C -0.14 -1.36 9.18 37.16 0.34 -1.02 16 4 C 0.11 1.34 5.68 -81.89 -0.47 0.88 16 5 N -0.55 -4.78 5.90 -9.11 -0.05 -4.84 16 6 H 0.41 2.32 8.96 -40.82 -0.37 1.95 16 7 C -0.02 -0.19 11.89 -16.82 -0.20 -0.39 16 8 C -0.17 -1.87 10.56 -37.50 -0.40 -2.26 16 9 C -0.23 -3.18 6.29 -103.35 -0.65 -3.83 16 10 C 0.59 9.98 7.13 -12.59 -0.09 9.89 16 11 O -0.55 -10.63 12.45 5.25 0.07 -10.57 16 12 N -0.70 -11.57 5.20 -46.77 -0.24 -11.82 16 13 C 0.16 3.10 0.92 -129.72 -0.12 2.98 16 14 C -0.11 -2.03 5.53 -24.93 -0.14 -2.17 16 15 C -0.13 -2.03 6.92 -24.56 -0.17 -2.20 16 16 C -0.11 -1.94 6.23 -24.95 -0.16 -2.10 16 17 C -0.11 -2.21 3.66 -88.53 -0.32 -2.54 16 18 H 0.07 1.16 7.75 -51.93 -0.40 0.76 16 19 C 0.14 3.41 5.56 -3.25 -0.02 3.39 16 20 N -0.59 -15.67 3.39 -171.13 -0.58 -16.25 16 21 C -0.21 -6.01 10.34 -15.06 -0.16 -6.16 16 22 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 23 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 24 N -0.92 -26.79 10.08 55.49 0.56 -26.23 16 25 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 C 0.14 3.29 5.27 -3.25 -0.02 3.28 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.13 1.87 5.50 -51.93 -0.29 1.58 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.14 1.35 7.70 -52.49 -0.40 0.94 16 39 H 0.39 5.50 7.44 -40.82 -0.30 5.20 16 40 H 0.08 1.58 7.56 -51.93 -0.39 1.19 16 41 H 0.06 1.20 6.69 -51.93 -0.35 0.85 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.08 1.68 7.56 -51.93 -0.39 1.29 16 46 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 47 H 0.13 3.46 4.88 -51.93 -0.25 3.21 16 48 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 49 H 0.01 0.33 8.06 -51.93 -0.42 -0.09 16 50 H 0.05 1.24 7.55 -51.93 -0.39 0.85 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -32.60 386.23 -10.22 -42.82 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.15 Total: 8.23 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.61 Total: -4.57 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.32 Total: -59.14 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.60 -10.22 -42.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098988721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.485 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds