Wall clock time and date at job start Sat Apr 11 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47383 * 2 1 4 4 C 1.53002 * 109.46845 * 239.99833 * 2 1 3 5 5 C 1.50695 * 109.47139 * 120.00402 * 2 1 3 6 6 C 1.38630 * 120.32793 * 59.98984 * 5 2 1 7 7 C 1.38586 * 118.49105 * 180.02562 * 6 5 2 8 8 C 1.39312 * 119.05940 * 0.02562 * 7 6 5 9 9 C 1.48166 * 119.72223 * 179.97438 * 8 7 6 10 10 O 1.21510 * 120.00466 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99714 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00072 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 H 1.09008 * 109.47017 * 294.99808 * 13 12 11 15 15 N 1.46500 * 109.47295 * 54.99786 * 13 12 11 16 16 C 1.36935 * 119.99902 * 204.99988 * 15 13 12 17 17 H 1.08001 * 120.00292 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99890 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99688 * 0.02562 * 18 16 15 20 20 Si 1.86790 * 120.00063 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47025 * 90.00429 * 20 18 16 22 22 H 1.48495 * 109.47428 * 210.00108 * 20 18 16 23 23 H 1.48501 * 109.47450 * 330.00828 * 20 18 16 24 24 C 1.53001 * 109.47049 * 174.99938 * 13 12 11 25 25 C 1.52990 * 117.49847 * 248.74417 * 24 13 12 26 26 C 1.52997 * 117.49598 * 180.08504 * 24 13 12 27 27 N 1.32713 * 120.55197 * 0.25578 * 8 7 6 28 28 C 1.31524 * 121.64454 * 359.47394 * 27 8 7 29 29 H 1.09002 * 109.46712 * 300.00537 * 1 2 3 30 30 H 1.09002 * 109.46911 * 59.99625 * 1 2 3 31 31 H 1.09002 * 109.47547 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47105 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47403 * 300.00074 * 3 2 1 34 34 H 1.09002 * 109.47635 * 60.00029 * 3 2 1 35 35 H 1.08999 * 109.47299 * 300.00761 * 4 2 1 36 36 H 1.09002 * 109.46656 * 60.00069 * 4 2 1 37 37 H 1.08995 * 109.47287 * 180.02562 * 4 2 1 38 38 H 1.07997 * 120.75171 * 0.02562 * 6 5 2 39 39 H 1.08000 * 120.47014 * 180.02562 * 7 6 5 40 40 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 42 42 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 43 43 H 0.96994 * 119.99416 * 25.00262 * 15 13 12 44 44 H 0.97006 * 119.99824 * 179.97438 * 19 18 16 45 45 H 1.09003 * 115.54519 * 34.41810 * 24 13 12 46 46 H 1.09005 * 117.50277 * 0.02562 * 25 24 13 47 47 H 1.09004 * 117.49857 * 145.02215 * 25 24 13 48 48 H 1.09008 * 117.49818 * 214.97963 * 26 24 13 49 49 H 1.09003 * 117.50244 * 359.97438 * 26 24 13 50 50 H 1.08000 * 119.55364 * 180.27368 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 1.7014 -2.0376 1.4565 7 6 2.1837 -2.6534 2.6005 8 6 2.9794 -1.9213 3.4790 9 6 3.5023 -2.5650 4.7068 10 8 3.2371 -3.7269 4.9439 11 7 4.2722 -1.8618 5.5607 12 6 4.7889 -2.4980 6.7750 13 6 5.6260 -1.4886 7.5631 14 1 6.5076 -1.2161 6.9829 15 7 4.8254 -0.2903 7.8268 16 6 5.4435 0.9130 8.0392 17 1 6.5211 0.9788 8.0120 18 6 4.6849 2.0485 8.2886 19 7 3.3715 1.9683 8.3212 20 14 5.5280 3.6897 8.5791 21 1 5.7019 4.3932 7.2828 22 1 4.6951 4.5206 9.4852 23 1 6.8573 3.4604 9.1999 24 6 6.0617 -2.1130 8.8902 25 6 5.4492 -1.5462 10.1724 26 6 6.9122 -1.2550 9.8290 27 7 3.2683 -0.6506 3.2280 28 6 2.8282 -0.0432 2.1476 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4423 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6765 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2491 38 1 1.0819 -2.5791 0.7570 39 1 1.9460 -3.6863 2.8081 40 1 4.4843 -0.9344 5.3713 41 1 3.9554 -2.8373 7.3902 42 1 5.4099 -3.3513 6.5021 43 1 3.8575 -0.3494 7.8509 44 1 2.8414 2.7617 8.4958 45 1 6.2679 -3.1830 8.8610 46 1 4.7354 -0.7287 10.0707 47 1 5.2527 -2.2432 10.9871 48 1 7.6776 -1.7606 10.4179 49 1 7.1616 -0.2459 9.5011 50 1 3.0877 0.9908 1.9747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480020249.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:27 Heat of formation + Delta-G solvation = 25.077443 kcal Electronic energy + Delta-G solvation = -28390.810885 eV Core-core repulsion = 24611.733736 eV Total energy + Delta-G solvation = -3779.077148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78952 -39.10151 -37.60544 -36.88630 -34.48438 -33.21913 -32.35287 -31.11776 -30.36869 -28.08537 -27.82271 -27.56516 -24.89352 -23.52216 -23.24309 -22.49245 -21.48177 -20.45913 -19.58896 -19.15080 -17.97918 -17.09909 -16.74760 -15.90482 -15.32381 -15.24795 -14.98269 -14.78415 -14.59684 -14.44814 -14.12701 -13.94896 -13.71245 -13.42219 -13.21924 -13.09282 -12.81688 -12.66324 -12.56970 -12.30842 -11.99772 -11.97285 -11.36726 -11.31929 -11.24180 -11.13504 -11.05235 -10.85742 -10.80475 -10.49162 -10.09365 -10.01896 -9.87439 -9.62975 -9.48291 -9.32536 -9.12013 -9.05336 -8.93209 -8.54244 -7.01467 -5.78183 -3.08039 0.68379 1.21553 2.94786 3.41904 3.47441 3.48664 3.49256 3.96508 4.16823 4.38737 4.43052 4.53898 4.67303 4.68102 4.78964 4.89457 4.97993 5.07204 5.29495 5.30638 5.40541 5.41376 5.46046 5.52161 5.55972 5.57605 5.61584 5.69318 5.72236 5.76923 5.80631 5.87174 5.88915 5.98770 5.99295 6.02492 6.09640 6.12309 6.15813 6.41763 6.50097 6.56213 6.68634 6.78870 6.93486 7.04338 7.31542 7.70174 7.73742 8.08178 8.38431 8.56938 9.50930 10.04845 10.41064 11.43327 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.003182 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.598370 B = 8797.452706 C =10670.380734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 C -0.150 4.150 4 C -0.139 4.139 5 C -0.107 4.107 6 C -0.082 4.082 7 C -0.112 4.112 8 C 0.080 3.920 9 C 0.565 3.435 10 O -0.551 6.551 11 N -0.689 5.689 12 C 0.116 3.884 13 C 0.192 3.808 14 H 0.057 0.943 15 N -0.716 5.716 16 C -0.238 4.238 17 H 0.071 0.929 18 C -0.007 4.007 19 N -0.927 5.927 20 Si 0.902 3.098 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.282 1.282 24 C -0.177 4.177 25 C -0.163 4.163 26 C -0.176 4.176 27 N -0.443 5.443 28 C 0.099 3.901 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.421 0.579 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.386 0.614 44 H 0.255 0.745 45 H 0.086 0.914 46 H 0.119 0.881 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.103 0.897 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 -6.204 -17.055 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C -0.207 4.207 4 C -0.196 4.196 5 C -0.110 4.110 6 C -0.108 4.108 7 C -0.133 4.133 8 C -0.058 4.058 9 C 0.349 3.651 10 O -0.430 6.430 11 N -0.339 5.339 12 C -0.008 4.008 13 C 0.081 3.919 14 H 0.075 0.925 15 N -0.358 5.358 16 C -0.369 4.369 17 H 0.089 0.911 18 C -0.203 4.203 19 N -0.575 5.575 20 Si 0.733 3.267 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.199 4.199 25 C -0.200 4.200 26 C -0.212 4.212 27 N -0.154 5.154 28 C -0.061 4.061 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.155 0.845 39 H 0.164 0.836 40 H 0.260 0.740 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.221 0.779 44 H 0.065 0.935 45 H 0.104 0.896 46 H 0.137 0.863 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.121 0.879 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.553 -6.417 -16.197 17.608 hybrid contribution -0.332 0.908 -0.328 1.021 sum -2.885 -5.509 -16.525 17.656 Atomic orbital electron populations 1.21910 0.93297 1.02183 1.02311 1.19485 0.95947 0.95280 0.91987 1.22006 1.01551 0.94573 1.02567 1.21902 1.01419 1.00154 0.96122 1.21056 0.97872 0.94790 0.97244 1.21374 0.98494 0.94189 0.96760 1.22082 0.95959 1.01749 0.93524 1.21262 0.97845 0.90674 0.96054 1.17869 0.79045 0.85624 0.82556 1.90735 1.59907 1.16488 1.75824 1.45872 1.49330 1.16956 1.21787 1.21664 0.98261 0.95725 0.85152 1.19985 0.93605 0.86872 0.91424 0.92477 1.42452 1.05603 1.02911 1.84804 1.19149 0.91315 0.85479 1.40985 0.91098 1.24691 0.95324 0.97714 1.02608 1.69664 1.03422 1.28546 1.55840 0.86276 0.78348 0.84525 0.77535 1.21800 1.21942 1.20808 1.23067 1.05792 0.97094 0.93952 1.22909 0.97091 1.03600 0.96376 1.22851 0.93616 1.01568 1.03210 1.67686 1.19944 1.08834 1.18909 1.22897 0.94002 1.00373 0.88790 0.92172 0.92024 0.92397 0.91885 0.91969 0.91722 0.92409 0.92035 0.92319 0.84528 0.83621 0.74003 0.91463 0.91643 0.77913 0.93548 0.89623 0.86326 0.91322 0.91057 0.87909 0.81931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.29 37.16 0.31 -0.70 16 2 C -0.03 -0.21 0.86 -155.66 -0.13 -0.34 16 3 C -0.15 -1.11 7.14 37.15 0.27 -0.85 16 4 C -0.14 -0.93 8.29 37.16 0.31 -0.62 16 5 C -0.11 -1.14 4.77 -104.36 -0.50 -1.64 16 6 C -0.08 -0.87 8.84 -39.31 -0.35 -1.22 16 7 C -0.11 -1.49 9.63 -39.05 -0.38 -1.87 16 8 C 0.08 1.30 6.75 -83.01 -0.56 0.74 16 9 C 0.56 10.35 7.81 -12.18 -0.10 10.26 16 10 O -0.55 -11.00 16.32 5.36 0.09 -10.91 16 11 N -0.69 -12.66 5.38 -61.14 -0.33 -12.99 16 12 C 0.12 2.07 5.21 -4.04 -0.02 2.05 16 13 C 0.19 3.66 2.86 -67.93 -0.19 3.46 16 14 H 0.06 1.11 8.08 -51.92 -0.42 0.69 16 15 N -0.72 -16.45 3.08 -53.42 -0.16 -16.62 16 16 C -0.24 -6.08 8.15 -15.06 -0.12 -6.20 16 17 H 0.07 1.79 6.91 -52.49 -0.36 1.42 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 19 N -0.93 -26.78 13.06 55.49 0.72 -26.05 16 20 Si 0.90 21.70 29.55 -169.99 -5.02 16.68 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.18 -3.16 5.70 -90.63 -0.52 -3.67 16 25 C -0.16 -3.10 9.74 -26.70 -0.26 -3.36 16 26 C -0.18 -3.19 9.87 -26.70 -0.26 -3.45 16 27 N -0.44 -7.14 9.54 -9.80 -0.09 -7.23 16 28 C 0.10 1.28 10.15 -17.56 -0.18 1.10 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.39 7.45 -51.93 -0.39 0.00 16 32 H 0.06 0.46 7.53 -51.93 -0.39 0.07 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.51 7.52 -51.93 -0.39 0.12 16 35 H 0.06 0.36 7.45 -51.93 -0.39 -0.02 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.14 1.05 7.24 -52.49 -0.38 0.67 16 39 H 0.15 1.82 7.64 -52.49 -0.40 1.42 16 40 H 0.42 8.21 7.47 -40.82 -0.30 7.91 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.39 9.81 7.80 -40.82 -0.32 9.49 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 45 H 0.09 1.36 8.11 -51.93 -0.42 0.93 16 46 H 0.12 2.70 6.68 -51.93 -0.35 2.36 16 47 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 49 H 0.10 2.09 6.22 -51.93 -0.32 1.77 16 50 H 0.16 1.82 5.90 -52.49 -0.31 1.51 16 LS Contribution 401.43 15.07 6.05 6.05 Total: -1.00 -29.63 401.43 -9.61 -39.25 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -8.08 Total: 18.41 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -2.78 Total: -6.58 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.14 Total: -62.89 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.63 -9.61 -39.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480020249.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.324 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds