Wall clock time and date at job start Sat Apr 11 2020 02:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47382 * 2 1 4 4 C 1.53000 * 109.47226 * 239.99494 * 2 1 3 5 5 C 1.50699 * 109.46649 * 119.99457 * 2 1 3 6 6 C 1.38635 * 120.32188 * 180.02562 * 5 2 1 7 7 C 1.38592 * 118.48700 * 179.70727 * 6 5 2 8 8 C 1.39301 * 119.05786 * 0.51246 * 7 6 5 9 9 C 1.48171 * 119.72419 * 179.75317 * 8 7 6 10 10 O 1.21517 * 119.99660 * 359.72658 * 9 8 7 11 11 N 1.34777 * 120.00392 * 179.72976 * 9 8 7 12 12 C 1.46500 * 120.00075 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47092 * 324.99806 * 12 11 9 14 14 C 1.53000 * 109.47023 * 204.99547 * 12 11 9 15 15 N 1.46507 * 109.46803 * 55.00453 * 14 12 11 16 16 C 1.36934 * 119.99498 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00844 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99803 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00430 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99966 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46849 * 89.99628 * 20 18 16 22 22 H 1.48495 * 109.47013 * 209.99719 * 20 18 16 23 23 H 1.48503 * 109.47112 * 329.99973 * 20 18 16 24 24 C 1.52997 * 109.47007 * 84.99755 * 12 11 9 25 25 C 1.52999 * 117.50101 * 8.75019 * 24 12 11 26 26 C 1.52996 * 117.50050 * 300.08878 * 24 12 11 27 27 N 1.32722 * 120.55918 * 359.47843 * 8 7 6 28 28 C 1.31526 * 121.63857 * 0.27342 * 27 8 7 29 29 H 1.09000 * 109.47176 * 300.00627 * 1 2 3 30 30 H 1.09005 * 109.46624 * 60.00096 * 1 2 3 31 31 H 1.08993 * 109.47296 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47186 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46639 * 299.99617 * 3 2 1 34 34 H 1.09002 * 109.47027 * 59.98945 * 3 2 1 35 35 H 1.08996 * 109.46766 * 299.99990 * 4 2 1 36 36 H 1.08996 * 109.46810 * 60.00525 * 4 2 1 37 37 H 1.09005 * 109.47026 * 180.02562 * 4 2 1 38 38 H 1.07994 * 120.75481 * 359.97438 * 6 5 2 39 39 H 1.07995 * 120.46716 * 180.28411 * 7 6 5 40 40 H 0.96997 * 119.99651 * 359.97438 * 11 9 8 41 41 H 1.09008 * 109.47142 * 174.99638 * 14 12 11 42 42 H 1.08990 * 109.47170 * 295.00136 * 14 12 11 43 43 H 0.96994 * 119.99737 * 359.97438 * 15 14 12 44 44 H 0.96998 * 120.00448 * 180.02562 * 19 18 16 45 45 H 1.09002 * 115.54867 * 154.41632 * 24 12 11 46 46 H 1.08998 * 117.49862 * 359.97438 * 25 24 12 47 47 H 1.09000 * 117.50295 * 145.02180 * 25 24 12 48 48 H 1.09005 * 117.49713 * 214.98330 * 26 24 12 49 49 H 1.08996 * 117.49883 * 359.97027 * 26 24 12 50 50 H 1.07996 * 119.55022 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0322 -0.7103 1.2306 6 6 3.3938 -0.8404 1.4570 7 6 3.8136 -1.4953 2.6040 8 6 2.8581 -2.0067 3.4791 9 6 3.2905 -2.7144 4.7070 10 8 4.4743 -2.8509 4.9446 11 7 2.3708 -3.2067 5.5604 12 6 2.7984 -3.9068 6.7742 13 1 3.7096 -4.4683 6.5678 14 6 1.6967 -4.8692 7.2227 15 7 1.3556 -5.7696 6.1184 16 6 0.3885 -6.7242 6.2873 17 1 -0.1231 -6.8132 7.2342 18 6 0.0649 -7.5770 5.2409 19 7 -0.8650 -8.4942 5.4029 20 14 0.9491 -7.4227 3.6026 21 1 2.1551 -8.2892 3.6076 22 1 0.0399 -7.8461 2.5076 23 1 1.3554 -6.0102 3.3905 24 6 3.0675 -2.8875 7.8829 25 6 2.6632 -1.4353 7.6209 26 6 4.1423 -1.8297 7.6244 27 7 1.5636 -1.8608 3.2252 28 6 1.1378 -1.2394 2.1470 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2490 36 1 1.6768 -0.2075 -2.1391 37 1 3.1301 -0.7217 -1.2489 38 1 4.1109 -0.4367 0.7576 39 1 4.8665 -1.6107 2.8143 40 1 1.4258 -3.0974 5.3710 41 1 2.0489 -5.4540 8.0726 42 1 0.8138 -4.3005 7.5138 43 1 1.8148 -5.6894 5.2678 44 1 -1.0909 -9.0904 4.6718 45 1 2.9650 -3.2625 8.9013 46 1 2.2059 -1.2061 6.6584 47 1 2.2952 -0.8548 8.4668 48 1 4.7467 -1.5086 8.4728 49 1 4.6580 -1.8604 6.6647 50 1 0.0765 -1.1403 1.9735 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483561663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:58 Heat of formation + Delta-G solvation = 32.606094 kcal Electronic energy + Delta-G solvation = -28962.217679 eV Core-core repulsion = 25183.466997 eV Total energy + Delta-G solvation = -3778.750682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01332 -39.77599 -37.51233 -36.79494 -35.04025 -33.43614 -32.46341 -31.45508 -30.68091 -28.53268 -27.93828 -27.65416 -24.92380 -23.87066 -23.39554 -22.22905 -21.42967 -21.21641 -19.77064 -19.64950 -18.32894 -17.50927 -16.93765 -16.15208 -15.92917 -15.60298 -15.07773 -14.88632 -14.68310 -14.40165 -14.23472 -14.08395 -13.76406 -13.55520 -13.41225 -13.07910 -12.97593 -12.74934 -12.64688 -12.41748 -12.16971 -12.07632 -11.83035 -11.54213 -11.48208 -11.42034 -11.29637 -11.15904 -11.01830 -10.85333 -10.31534 -10.16575 -10.03061 -10.01090 -9.69554 -9.56391 -9.51804 -9.17720 -8.91685 -8.73720 -7.24052 -5.76387 -3.11991 0.52211 1.06295 2.74400 3.22268 3.39370 3.44302 3.46485 3.77901 3.98918 4.04655 4.23731 4.31145 4.57830 4.60582 4.65744 4.71662 4.80613 4.84926 4.94134 5.13854 5.16841 5.17121 5.21742 5.28237 5.36786 5.43896 5.45887 5.48234 5.53003 5.56466 5.58892 5.62765 5.71183 5.76069 5.82110 5.86603 5.87891 5.89589 5.93093 6.03690 6.09478 6.27275 6.40329 6.42118 6.46327 6.61830 6.82329 7.53176 7.83589 7.99009 8.34007 8.42386 9.21178 9.93710 10.13057 11.41865 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.009320 B = 0.004090 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.544573 B = 6843.678729 C = 8945.175002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.104 4.104 6 C -0.081 4.081 7 C -0.110 4.110 8 C 0.076 3.924 9 C 0.569 3.431 10 O -0.537 6.537 11 N -0.690 5.690 12 C 0.162 3.838 13 H 0.093 0.907 14 C 0.153 3.847 15 N -0.755 5.755 16 C -0.243 4.243 17 H 0.092 0.908 18 C 0.008 3.992 19 N -0.933 5.933 20 Si 0.881 3.119 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.159 4.159 25 C -0.177 4.177 26 C -0.187 4.187 27 N -0.448 5.448 28 C 0.098 3.902 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.416 0.584 41 H 0.045 0.955 42 H 0.036 0.964 43 H 0.363 0.637 44 H 0.259 0.741 45 H 0.113 0.887 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.115 0.885 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.267 22.825 -9.645 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.198 4.198 5 C -0.107 4.107 6 C -0.107 4.107 7 C -0.131 4.131 8 C -0.062 4.062 9 C 0.354 3.646 10 O -0.414 6.414 11 N -0.341 5.341 12 C 0.057 3.943 13 H 0.111 0.889 14 C 0.025 3.975 15 N -0.401 5.401 16 C -0.373 4.373 17 H 0.109 0.891 18 C -0.188 4.188 19 N -0.581 5.581 20 Si 0.711 3.289 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.179 4.179 25 C -0.214 4.214 26 C -0.224 4.224 27 N -0.159 5.159 28 C -0.062 4.062 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.156 0.844 39 H 0.165 0.835 40 H 0.253 0.747 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.196 0.804 44 H 0.069 0.931 45 H 0.131 0.869 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.104 0.896 49 H 0.133 0.867 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.323 22.190 -8.707 24.937 hybrid contribution 0.641 0.317 -1.890 2.021 sum 7.965 22.507 -10.598 26.122 Atomic orbital electron populations 1.22010 0.93585 1.02623 1.02479 1.19501 0.96194 0.95051 0.92002 1.21903 1.01170 0.94281 1.02247 1.21916 1.01195 1.00609 0.96063 1.21075 0.94207 0.98273 0.97099 1.21407 0.95448 0.97217 0.96622 1.22094 1.01607 0.95890 0.93461 1.21231 0.89571 0.99133 0.96295 1.17878 0.85811 0.78719 0.82175 1.90697 1.16582 1.58989 1.75182 1.45926 1.10818 1.55266 1.22043 1.20906 0.99597 0.91500 0.82299 0.88917 1.20895 0.94250 0.90417 0.91906 1.42694 1.46576 1.39464 1.11347 1.19038 1.11431 1.07128 0.99721 0.89056 1.24625 0.98571 0.97970 0.97616 1.69692 1.33823 1.22308 1.32264 0.86601 0.79377 0.77625 0.85299 1.21128 1.21741 1.20335 1.22658 1.04796 0.90613 0.99816 1.22907 0.98330 0.97378 1.02818 1.23332 0.91684 1.03020 1.04360 1.67637 1.16109 1.12410 1.19742 1.22888 1.00668 0.93615 0.89031 0.91891 0.91851 0.91773 0.92374 0.91939 0.92310 0.92185 0.91908 0.92356 0.84371 0.83489 0.74675 0.93771 0.94653 0.80437 0.93068 0.86923 0.89008 0.89358 0.89611 0.86737 0.81833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 7.14 37.16 0.27 -0.71 16 2 C -0.03 -0.19 0.86 -155.66 -0.13 -0.32 16 3 C -0.14 -0.83 8.29 37.16 0.31 -0.52 16 4 C -0.14 -0.94 8.29 37.16 0.31 -0.63 16 5 C -0.10 -1.01 4.77 -104.36 -0.50 -1.51 16 6 C -0.08 -0.79 8.84 -39.30 -0.35 -1.14 16 7 C -0.11 -1.35 9.63 -39.06 -0.38 -1.73 16 8 C 0.08 1.14 6.75 -83.01 -0.56 0.58 16 9 C 0.57 9.51 6.65 -12.18 -0.08 9.43 16 10 O -0.54 -9.69 13.35 5.35 0.07 -9.62 16 11 N -0.69 -11.50 3.04 -54.65 -0.17 -11.66 16 12 C 0.16 2.69 2.59 -67.93 -0.18 2.52 16 13 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 14 C 0.15 2.94 5.80 -4.04 -0.02 2.91 16 15 N -0.75 -18.12 5.24 -59.90 -0.31 -18.43 16 16 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 17 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 18 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 19 N -0.93 -29.56 13.97 55.49 0.78 -28.78 16 20 Si 0.88 22.90 27.74 -169.99 -4.71 18.19 16 21 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 23 H -0.28 -6.96 6.52 56.52 0.37 -6.59 16 24 C -0.16 -2.24 5.70 -90.62 -0.52 -2.76 16 25 C -0.18 -2.33 9.74 -26.69 -0.26 -2.59 16 26 C -0.19 -2.56 9.82 -26.70 -0.26 -2.82 16 27 N -0.45 -6.53 9.54 -9.80 -0.09 -6.63 16 28 C 0.10 1.14 10.15 -17.56 -0.18 0.96 16 29 H 0.06 0.39 7.53 -51.93 -0.39 0.00 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.45 7.52 -51.93 -0.39 0.06 16 32 H 0.06 0.33 7.45 -51.93 -0.39 -0.06 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.37 7.45 -51.93 -0.39 -0.02 16 38 H 0.14 0.97 7.24 -52.49 -0.38 0.59 16 39 H 0.15 1.70 7.64 -52.49 -0.40 1.30 16 40 H 0.42 7.08 7.93 -40.82 -0.32 6.76 16 41 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.36 8.81 5.20 -40.82 -0.21 8.59 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 45 H 0.11 1.44 8.11 -51.93 -0.42 1.02 16 46 H 0.09 1.29 6.67 -51.93 -0.35 0.94 16 47 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.11 1.79 5.01 -51.93 -0.26 1.53 16 50 H 0.16 1.58 5.90 -52.49 -0.31 1.27 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -33.09 395.49 -9.27 -42.35 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -8.00 Total: 13.90 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.79 Total: -5.28 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: 0.20 Total: -65.51 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.62 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.71 Total: 18.19 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.09 -9.27 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483561663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.960 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds