Wall clock time and date at job start Sat Apr 11 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47382 * 2 1 4 4 C 1.53000 * 109.47226 * 239.99494 * 2 1 3 5 5 C 1.50699 * 109.46649 * 119.99457 * 2 1 3 6 6 C 1.38635 * 120.32188 * 180.02562 * 5 2 1 7 7 C 1.38592 * 118.48700 * 179.70727 * 6 5 2 8 8 C 1.39301 * 119.05786 * 0.51246 * 7 6 5 9 9 C 1.48171 * 119.72419 * 179.75317 * 8 7 6 10 10 O 1.21517 * 119.99660 * 359.72658 * 9 8 7 11 11 N 1.34777 * 120.00392 * 179.72976 * 9 8 7 12 12 C 1.46500 * 120.00075 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47092 * 324.99806 * 12 11 9 14 14 C 1.53000 * 109.47023 * 204.99547 * 12 11 9 15 15 N 1.46507 * 109.46803 * 55.00453 * 14 12 11 16 16 C 1.36934 * 119.99498 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00844 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99803 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00430 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99966 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46849 * 89.99628 * 20 18 16 22 22 H 1.48495 * 109.47013 * 209.99719 * 20 18 16 23 23 H 1.48503 * 109.47112 * 329.99973 * 20 18 16 24 24 C 1.52997 * 109.47007 * 84.99755 * 12 11 9 25 25 C 1.52999 * 117.50101 * 8.75019 * 24 12 11 26 26 C 1.52996 * 117.50050 * 300.08878 * 24 12 11 27 27 N 1.32722 * 120.55918 * 359.47843 * 8 7 6 28 28 C 1.31526 * 121.63857 * 0.27342 * 27 8 7 29 29 H 1.09000 * 109.47176 * 300.00627 * 1 2 3 30 30 H 1.09005 * 109.46624 * 60.00096 * 1 2 3 31 31 H 1.08993 * 109.47296 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47186 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46639 * 299.99617 * 3 2 1 34 34 H 1.09002 * 109.47027 * 59.98945 * 3 2 1 35 35 H 1.08996 * 109.46766 * 299.99990 * 4 2 1 36 36 H 1.08996 * 109.46810 * 60.00525 * 4 2 1 37 37 H 1.09005 * 109.47026 * 180.02562 * 4 2 1 38 38 H 1.07994 * 120.75481 * 359.97438 * 6 5 2 39 39 H 1.07995 * 120.46716 * 180.28411 * 7 6 5 40 40 H 0.96997 * 119.99651 * 359.97438 * 11 9 8 41 41 H 1.09008 * 109.47142 * 174.99638 * 14 12 11 42 42 H 1.08990 * 109.47170 * 295.00136 * 14 12 11 43 43 H 0.96994 * 119.99737 * 359.97438 * 15 14 12 44 44 H 0.96998 * 120.00448 * 180.02562 * 19 18 16 45 45 H 1.09002 * 115.54867 * 154.41632 * 24 12 11 46 46 H 1.08998 * 117.49862 * 359.97438 * 25 24 12 47 47 H 1.09000 * 117.50295 * 145.02180 * 25 24 12 48 48 H 1.09005 * 117.49713 * 214.98330 * 26 24 12 49 49 H 1.08996 * 117.49883 * 359.97027 * 26 24 12 50 50 H 1.07996 * 119.55022 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0322 -0.7103 1.2306 6 6 3.3938 -0.8404 1.4570 7 6 3.8136 -1.4953 2.6040 8 6 2.8581 -2.0067 3.4791 9 6 3.2905 -2.7144 4.7070 10 8 4.4743 -2.8509 4.9446 11 7 2.3708 -3.2067 5.5604 12 6 2.7984 -3.9068 6.7742 13 1 3.7096 -4.4683 6.5678 14 6 1.6967 -4.8692 7.2227 15 7 1.3556 -5.7696 6.1184 16 6 0.3885 -6.7242 6.2873 17 1 -0.1231 -6.8132 7.2342 18 6 0.0649 -7.5770 5.2409 19 7 -0.8650 -8.4942 5.4029 20 14 0.9491 -7.4227 3.6026 21 1 2.1551 -8.2892 3.6076 22 1 0.0399 -7.8461 2.5076 23 1 1.3554 -6.0102 3.3905 24 6 3.0675 -2.8875 7.8829 25 6 2.6632 -1.4353 7.6209 26 6 4.1423 -1.8297 7.6244 27 7 1.5636 -1.8608 3.2252 28 6 1.1378 -1.2394 2.1470 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2490 36 1 1.6768 -0.2075 -2.1391 37 1 3.1301 -0.7217 -1.2489 38 1 4.1109 -0.4367 0.7576 39 1 4.8665 -1.6107 2.8143 40 1 1.4258 -3.0974 5.3710 41 1 2.0489 -5.4540 8.0726 42 1 0.8138 -4.3005 7.5138 43 1 1.8148 -5.6894 5.2678 44 1 -1.0909 -9.0904 4.6718 45 1 2.9650 -3.2625 8.9013 46 1 2.2059 -1.2061 6.6584 47 1 2.2952 -0.8548 8.4668 48 1 4.7467 -1.5086 8.4728 49 1 4.6580 -1.8604 6.6647 50 1 0.0765 -1.1403 1.9735 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483561663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:57 Heat of formation + Delta-G solvation = 12.696783 kcal Electronic energy + Delta-G solvation = -28963.081011 eV Core-core repulsion = 25183.466997 eV Total energy + Delta-G solvation = -3779.614014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.00610 -40.89357 -38.57672 -37.70588 -36.72007 -34.92632 -33.55780 -33.22358 -31.74802 -30.08960 -28.48439 -28.11746 -26.19327 -25.42240 -24.25646 -23.43785 -22.97836 -22.40263 -20.98596 -20.39226 -19.97375 -19.05371 -17.93594 -17.40615 -16.98167 -16.62258 -16.57549 -16.10875 -15.77041 -15.65792 -15.24193 -15.12031 -14.88221 -14.78100 -14.71710 -14.29618 -14.16988 -13.87495 -13.72405 -13.46320 -13.15531 -13.02102 -12.90848 -12.85029 -12.72552 -12.55763 -12.33361 -12.17026 -12.10573 -11.94329 -11.87322 -11.73924 -11.46947 -11.15543 -11.06794 -10.88719 -10.85274 -10.49640 -10.16737 -9.96148 -9.34920 -8.06600 -5.39086 -0.43783 0.19170 1.31176 1.31998 1.38809 1.61795 2.01719 2.41783 2.77754 2.90459 3.05476 3.25954 3.43468 3.51954 3.65187 3.79578 3.86427 3.90513 4.01317 4.04262 4.06052 4.06097 4.23473 4.32501 4.41676 4.44987 4.56315 4.68119 4.75708 4.78593 4.80300 4.83510 4.89235 4.89827 4.95537 5.02430 5.02697 5.07008 5.09491 5.15177 5.22618 5.29883 5.35400 5.41915 5.44931 5.46441 5.56694 5.72805 6.17260 6.35637 6.74450 7.02637 7.08060 7.78332 7.96420 9.14863 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.009320 B = 0.004090 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.544573 B = 6843.678729 C = 8945.175002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 C -0.137 4.137 4 C -0.141 4.141 5 C -0.090 4.090 6 C -0.075 4.075 7 C -0.112 4.112 8 C 0.044 3.956 9 C 0.567 3.433 10 O -0.557 6.557 11 N -0.692 5.692 12 C 0.171 3.829 13 H 0.076 0.924 14 C 0.153 3.847 15 N -0.757 5.757 16 C -0.229 4.229 17 H 0.067 0.933 18 C -0.053 4.053 19 N -0.978 5.978 20 Si 0.945 3.055 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.267 1.267 24 C -0.165 4.165 25 C -0.167 4.167 26 C -0.184 4.184 27 N -0.474 5.474 28 C 0.084 3.916 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.172 0.828 39 H 0.150 0.850 40 H 0.413 0.587 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.362 0.638 44 H 0.258 0.742 45 H 0.130 0.870 46 H 0.080 0.920 47 H 0.110 0.890 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.254 25.395 -11.233 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 C -0.194 4.194 4 C -0.198 4.198 5 C -0.092 4.092 6 C -0.100 4.100 7 C -0.132 4.132 8 C -0.093 4.093 9 C 0.353 3.647 10 O -0.437 6.437 11 N -0.342 5.342 12 C 0.066 3.934 13 H 0.094 0.906 14 C 0.027 3.973 15 N -0.403 5.403 16 C -0.360 4.360 17 H 0.085 0.915 18 C -0.245 4.245 19 N -0.629 5.629 20 Si 0.774 3.226 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.192 1.192 24 C -0.184 4.184 25 C -0.204 4.204 26 C -0.220 4.220 27 N -0.185 5.185 28 C -0.076 4.076 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.189 0.811 39 H 0.168 0.832 40 H 0.250 0.750 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.195 0.805 44 H 0.067 0.933 45 H 0.148 0.852 46 H 0.098 0.902 47 H 0.128 0.872 48 H 0.124 0.876 49 H 0.112 0.888 50 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 8.337 24.800 -10.275 28.109 hybrid contribution 0.299 -0.398 -1.384 1.471 sum 8.636 24.402 -11.659 28.390 Atomic orbital electron populations 1.22035 0.93208 1.02375 1.03283 1.19582 0.96559 0.95582 0.90785 1.21902 1.01603 0.93149 1.02763 1.21932 1.01644 0.99906 0.96301 1.21413 0.93984 0.96630 0.97222 1.21757 0.96174 0.96077 0.96029 1.22225 1.01343 0.95806 0.93876 1.21069 0.90444 1.01237 0.96547 1.18210 0.85470 0.78397 0.82618 1.90672 1.17253 1.59919 1.75822 1.45916 1.10690 1.55406 1.22209 1.20697 0.97541 0.91731 0.83388 0.90613 1.21038 0.95369 0.90252 0.90665 1.42707 1.45596 1.39350 1.12642 1.19053 1.11153 1.07269 0.98475 0.91544 1.25307 0.99845 0.98227 1.01169 1.69840 1.35937 1.23732 1.33373 0.85559 0.78020 0.77969 0.81060 1.20973 1.21755 1.19205 1.22610 1.05824 0.90481 0.99493 1.22937 0.97859 0.96578 1.03057 1.23288 0.92002 1.02619 1.04131 1.67544 1.16157 1.13586 1.21240 1.23265 1.01867 0.93602 0.88845 0.91816 0.90395 0.92567 0.91721 0.90456 0.92831 0.93533 0.90337 0.91694 0.81107 0.83213 0.74996 0.93123 0.94009 0.80502 0.93267 0.85232 0.90157 0.87207 0.87551 0.88783 0.80444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 7.14 71.98 0.51 -1.11 16 2 C -0.02 -0.28 0.86 -52.93 -0.05 -0.32 16 3 C -0.14 -1.18 8.29 71.98 0.60 -0.59 16 4 C -0.14 -1.46 8.29 71.98 0.60 -0.86 16 5 C -0.09 -1.56 4.77 -19.69 -0.09 -1.66 16 6 C -0.07 -1.30 8.84 22.45 0.20 -1.10 16 7 C -0.11 -2.65 9.63 22.61 0.22 -2.43 16 8 C 0.04 1.31 6.75 41.91 0.28 1.60 16 9 C 0.57 19.13 6.65 86.88 0.58 19.71 16 10 O -0.56 -20.39 13.35 -3.77 -0.05 -20.44 16 11 N -0.69 -23.19 3.04 -445.09 -1.35 -24.54 16 12 C 0.17 5.67 2.59 44.99 0.12 5.79 16 13 H 0.08 2.78 7.58 -2.39 -0.02 2.76 16 14 C 0.15 5.84 5.80 86.38 0.50 6.34 16 15 N -0.76 -36.39 5.24 -343.44 -1.80 -38.19 16 16 C -0.23 -13.19 10.47 84.03 0.88 -12.31 16 17 H 0.07 4.11 8.06 -2.91 -0.02 4.09 16 18 C -0.05 -3.22 5.50 84.86 0.47 -2.75 16 19 N -0.98 -63.24 13.97 21.65 0.30 -62.93 16 20 Si 0.95 47.97 27.74 68.60 1.90 49.87 16 21 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 23 H -0.27 -12.90 6.52 99.48 0.65 -12.25 16 24 C -0.16 -4.44 5.70 -10.80 -0.06 -4.50 16 25 C -0.17 -4.15 9.74 30.62 0.30 -3.85 16 26 C -0.18 -4.78 9.82 30.62 0.30 -4.48 16 27 N -0.47 -13.74 9.54 -184.91 -1.76 -15.51 16 28 C 0.08 1.88 10.15 84.82 0.86 2.74 16 29 H 0.06 0.67 7.53 -2.39 -0.02 0.65 16 30 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.70 7.52 -2.39 -0.02 0.68 16 32 H 0.06 0.49 7.45 -2.39 -0.02 0.47 16 33 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.06 0.59 7.45 -2.38 -0.02 0.57 16 38 H 0.17 1.78 7.24 -2.91 -0.02 1.76 16 39 H 0.15 3.38 7.64 -2.91 -0.02 3.35 16 40 H 0.41 14.23 7.93 -92.71 -0.74 13.49 16 41 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.36 17.49 5.20 -92.71 -0.48 17.01 16 44 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 45 H 0.13 3.05 8.11 -2.39 -0.02 3.03 16 46 H 0.08 2.21 6.67 -2.39 -0.02 2.19 16 47 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.11 2.31 8.14 -2.38 -0.02 2.30 16 49 H 0.09 2.92 5.01 -2.39 -0.01 2.91 16 50 H 0.18 3.26 5.90 -2.91 -0.02 3.25 16 Total: -1.00 -72.31 395.49 3.12 -69.19 By element: Atomic # 1 Polarization: 42.66 SS G_CDS: -0.32 Total: 42.34 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 6.21 Total: 0.21 kcal Atomic # 7 Polarization: -136.56 SS G_CDS: -4.62 Total: -141.17 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.90 Total: 49.87 kcal Total: -72.31 3.12 -69.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483561663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.886 kcal (2) G-P(sol) polarization free energy of solvation -72.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds