Wall clock time and date at job start Sat Apr 11 2020 03:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47192 * 2 1 4 4 C 1.53003 * 109.46817 * 184.83122 * 3 2 1 5 5 H 1.08995 * 109.47129 * 305.79771 * 4 3 2 6 6 C 1.50700 * 109.46984 * 65.80293 * 4 3 2 7 7 O 1.21273 * 120.00316 * 34.48238 * 6 4 3 8 8 N 1.34775 * 119.99627 * 214.47811 * 6 4 3 9 9 C 1.46507 * 119.99831 * 175.20751 * 8 6 4 10 10 C 1.52991 * 110.64150 * 56.85975 * 9 8 6 11 11 C 1.55155 * 110.71817 * 180.02562 * 9 8 6 12 12 C 1.54916 * 101.58221 * 82.86311 * 11 9 8 13 13 N 1.47426 * 104.83221 * 37.00553 * 12 11 9 14 14 C 1.36932 * 125.64570 * 155.90771 * 13 12 11 15 15 H 1.07999 * 120.00403 * 179.97438 * 14 13 12 16 16 C 1.38812 * 119.99991 * 359.97438 * 14 13 12 17 17 N 1.31612 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99884 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46975 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46869 * 120.00093 * 18 16 14 21 21 H 1.48498 * 109.46746 * 239.99863 * 18 16 14 22 22 C 1.47022 * 108.70407 * 335.87408 * 13 12 11 23 23 C 1.50706 * 109.47087 * 185.80051 * 4 3 2 24 24 C 1.38225 * 119.61533 * 274.73081 * 23 4 3 25 25 C 1.38636 * 119.15634 * 179.70878 * 24 23 4 26 26 C 1.38668 * 118.42153 * 0.54960 * 25 24 23 27 27 C 1.38180 * 119.16115 * 359.73256 * 26 25 24 28 28 N 1.31858 * 119.61636 * 94.99832 * 23 4 3 29 29 H 1.08997 * 109.46933 * 59.99411 * 1 2 3 30 30 H 1.08998 * 109.47446 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46647 * 300.00247 * 1 2 3 32 32 H 1.09003 * 109.46647 * 239.99753 * 2 1 3 33 33 H 1.09002 * 109.46664 * 120.00199 * 2 1 3 34 34 H 1.09003 * 109.47390 * 64.83520 * 3 2 1 35 35 H 1.08993 * 109.47365 * 304.82911 * 3 2 1 36 36 H 0.97003 * 120.00321 * 355.21012 * 8 6 4 37 37 H 1.08996 * 109.47339 * 60.69952 * 10 9 8 38 38 H 1.09004 * 109.47508 * 180.70324 * 10 9 8 39 39 H 1.09004 * 109.47174 * 300.70346 * 10 9 8 40 40 H 1.08998 * 111.00277 * 200.93252 * 11 9 8 41 41 H 1.08992 * 111.00683 * 324.74785 * 11 9 8 42 42 H 1.09005 * 110.36708 * 155.84765 * 12 11 9 43 43 H 1.09001 * 110.36422 * 278.16605 * 12 11 9 44 44 H 0.97002 * 120.00521 * 180.02562 * 17 16 14 45 45 H 1.08999 * 109.88122 * 241.64321 * 22 13 12 46 46 H 1.08997 * 109.88236 * 120.47528 * 22 13 12 47 47 H 1.07999 * 120.42448 * 359.97438 * 24 23 4 48 48 H 1.08004 * 120.79057 * 180.25995 * 25 24 23 49 49 H 1.07994 * 120.41965 * 179.70903 * 26 25 24 50 50 H 1.08011 * 119.61589 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5653 1.4441 -0.1215 5 1 3.9929 0.8202 0.6633 6 6 3.9624 0.8988 -1.4691 7 8 3.2688 1.1167 -2.4398 8 7 5.0884 0.1691 -1.5956 9 6 5.4202 -0.4489 -2.8818 10 6 5.4928 0.6083 -3.9853 11 6 6.7545 -1.2348 -2.7852 12 6 6.2794 -2.5817 -2.1850 13 7 4.9686 -2.8325 -2.8115 14 6 4.3806 -4.0592 -2.9679 15 1 3.4133 -4.1380 -3.4416 16 6 5.0278 -5.2016 -2.5175 17 7 6.2069 -5.1059 -1.9406 18 14 4.2253 -6.8751 -2.7302 19 1 2.9113 -6.7120 -3.4026 20 1 5.1013 -7.7425 -3.5580 21 1 4.0251 -7.5008 -1.3984 22 6 4.3971 -1.5474 -3.2397 23 6 4.0791 2.8536 0.0214 24 6 4.1247 3.6796 -1.0860 25 6 4.5934 4.9764 -0.9425 26 6 5.0113 5.3920 0.3126 27 6 4.9420 4.5079 1.3723 28 7 4.4849 3.2829 1.2002 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.7492 1.9307 0.9301 35 1 1.6079 1.9807 -0.8435 36 1 5.6792 0.0531 -0.8350 37 1 6.2696 1.3335 -3.7433 38 1 5.7281 0.1270 -4.9347 39 1 4.5323 1.1175 -4.0644 40 1 7.1945 -1.3803 -3.7717 41 1 7.4553 -0.7343 -2.1171 42 1 6.9795 -3.3778 -2.4382 43 1 6.1732 -2.4985 -1.1034 44 1 6.6594 -5.9043 -1.6262 45 1 3.4592 -1.3656 -2.7150 46 1 4.2261 -1.5581 -4.3162 47 1 3.7953 3.3207 -2.0499 48 1 4.6364 5.6455 -1.7892 49 1 5.3866 6.3939 0.4600 50 1 5.2659 4.8238 2.3531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671667095.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:44 Heat of formation + Delta-G solvation = 13.719608 kcal Electronic energy + Delta-G solvation = -29746.461525 eV Core-core repulsion = 25966.891864 eV Total energy + Delta-G solvation = -3779.569661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.87402 -39.65555 -37.58354 -35.34492 -33.98393 -32.85688 -32.41407 -31.72267 -30.05555 -29.05185 -28.62692 -25.70318 -25.06672 -23.77945 -23.63711 -22.63291 -21.49241 -20.39143 -19.88289 -19.02972 -17.54176 -16.94381 -16.82797 -16.13478 -15.65384 -15.42885 -14.98957 -14.70870 -14.61787 -14.40813 -13.75410 -13.64679 -13.43817 -13.26180 -13.22765 -13.09092 -12.70268 -12.34517 -12.26276 -12.05132 -11.92603 -11.71915 -11.57347 -11.55575 -11.19276 -10.93215 -10.86889 -10.86733 -10.53136 -10.39057 -10.31738 -10.05555 -10.04420 -9.94817 -9.64894 -9.61459 -9.31446 -9.02389 -8.66730 -8.60821 -6.80828 -5.64439 -3.04942 0.89468 1.09755 2.78963 3.35063 3.40842 3.46805 3.49079 3.59535 4.17841 4.49671 4.52866 4.64815 4.82631 4.86505 4.92284 5.01741 5.09037 5.17084 5.29104 5.37215 5.41072 5.45969 5.50572 5.57961 5.60701 5.67496 5.74307 5.75585 5.89671 5.92887 6.01454 6.03155 6.06125 6.18259 6.21122 6.23393 6.36516 6.37126 6.42812 6.48334 6.50443 6.54436 6.71860 6.81426 7.12898 7.46121 7.64432 7.78201 7.81015 7.87553 8.35761 8.49625 9.23794 9.84612 10.49304 11.39831 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.003486 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.737424 B = 8029.448196 C = 8925.750477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.092 4.092 4 C -0.061 4.061 5 H 0.106 0.894 6 C 0.529 3.471 7 O -0.533 6.533 8 N -0.703 5.703 9 C 0.159 3.841 10 C -0.152 4.152 11 C -0.147 4.147 12 C 0.153 3.847 13 N -0.603 5.603 14 C -0.217 4.217 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.924 5.924 18 Si 0.913 3.087 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.139 3.861 23 C 0.143 3.857 24 C -0.162 4.162 25 C -0.074 4.074 26 C -0.178 4.178 27 C 0.098 3.902 28 N -0.478 5.478 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.398 0.602 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.108 0.892 43 H 0.011 0.989 44 H 0.251 0.749 45 H 0.029 0.971 46 H 0.030 0.970 47 H 0.145 0.855 48 H 0.134 0.866 49 H 0.133 0.867 50 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.994 20.356 4.716 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.131 4.131 4 C -0.083 4.083 5 H 0.124 0.876 6 C 0.314 3.686 7 O -0.411 6.411 8 N -0.353 5.353 9 C 0.073 3.927 10 C -0.211 4.211 11 C -0.186 4.186 12 C 0.028 3.972 13 N -0.329 5.329 14 C -0.345 4.345 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.573 5.573 18 Si 0.744 3.256 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.013 3.987 23 C 0.005 3.995 24 C -0.181 4.181 25 C -0.100 4.100 26 C -0.198 4.198 27 C -0.059 4.059 28 N -0.187 5.187 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.232 0.768 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.125 0.875 43 H 0.029 0.971 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.048 0.952 47 H 0.163 0.837 48 H 0.152 0.848 49 H 0.151 0.849 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.502 19.691 4.760 20.412 hybrid contribution 0.057 -0.303 -0.264 0.406 sum -2.445 19.388 4.496 20.052 Atomic orbital electron populations 1.21700 0.95645 1.01710 1.01353 1.21559 0.96204 0.95853 1.02864 1.21452 0.90554 0.98321 1.02724 1.20308 0.98697 0.92224 0.97057 0.87556 1.20056 0.80725 0.78034 0.89816 1.90619 1.52264 1.58839 1.39335 1.46062 1.23803 1.51603 1.13861 1.21365 0.96719 0.92119 0.82472 1.22096 1.02990 0.98459 0.97524 1.23363 0.94291 0.99002 1.01983 1.21936 0.88901 0.92730 0.93645 1.44498 1.18503 1.00793 1.69129 1.19125 1.00972 0.82302 1.32135 0.90521 1.24754 0.97183 0.97830 1.00961 1.69782 1.14762 1.27008 1.45728 0.86015 0.78310 0.84047 0.77275 1.20537 1.21781 1.21807 1.21579 0.94458 0.85457 0.97233 1.20655 0.94813 0.95115 0.88895 1.22247 1.00304 0.94544 1.01033 1.21609 0.95097 0.95660 0.97625 1.22143 1.02168 1.01414 0.94065 1.22728 0.95261 0.88744 0.99163 1.67443 1.10025 1.16479 1.24725 0.92721 0.92606 0.93140 0.91106 0.91896 0.91255 0.90462 0.76769 0.93405 0.91970 0.90199 0.90581 0.91978 0.87455 0.97133 0.93861 0.95328 0.95228 0.83720 0.84813 0.84865 0.82677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.39 16 2 C -0.13 -1.73 5.83 -26.73 -0.16 -1.89 16 3 C -0.09 -1.17 4.43 -26.73 -0.12 -1.29 16 4 C -0.06 -0.80 2.49 -92.92 -0.23 -1.04 16 5 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 6 C 0.53 8.15 4.08 -10.99 -0.04 8.10 16 7 O -0.53 -9.27 11.86 5.56 0.07 -9.21 16 8 N -0.70 -11.14 5.14 -45.91 -0.24 -11.38 16 9 C 0.16 2.81 0.81 -129.98 -0.11 2.71 16 10 C -0.15 -2.39 8.37 37.15 0.31 -2.08 16 11 C -0.15 -2.69 6.07 -24.58 -0.15 -2.84 16 12 C 0.15 3.60 5.87 -2.52 -0.01 3.59 16 13 N -0.60 -15.44 3.39 -170.07 -0.58 -16.02 16 14 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16 15 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 16 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 17 N -0.92 -26.69 10.09 55.49 0.56 -26.13 16 18 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 C 0.14 3.06 6.24 -3.06 -0.02 3.04 16 23 C 0.14 1.81 5.79 -82.58 -0.48 1.34 16 24 C -0.16 -1.92 9.18 -39.44 -0.36 -2.28 16 25 C -0.07 -0.70 10.18 -39.28 -0.40 -1.10 16 26 C -0.18 -1.50 10.11 -39.44 -0.40 -1.90 16 27 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 28 N -0.48 -5.90 10.27 -9.47 -0.10 -6.00 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.17 7.16 -51.93 -0.37 0.80 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.03 7.65 -51.93 -0.40 0.63 16 36 H 0.40 5.78 8.49 -40.82 -0.35 5.44 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 39 H 0.08 1.32 5.89 -51.93 -0.31 1.02 16 40 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 41 H 0.06 0.97 8.07 -51.93 -0.42 0.56 16 42 H 0.11 2.87 5.87 -51.93 -0.31 2.56 16 43 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.03 0.67 7.03 -51.93 -0.37 0.31 16 46 H 0.03 0.67 7.81 -51.93 -0.41 0.26 16 47 H 0.15 1.86 6.34 -52.49 -0.33 1.53 16 48 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 49 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 50 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 393.85 15.07 5.94 5.94 Total: -1.00 -31.48 393.85 -9.90 -41.38 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -8.28 Total: 7.16 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.24 Total: -2.96 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.35 Total: -59.52 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.21 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.48 -9.90 -41.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671667095.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.101 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds