Wall clock time and date at job start Sat Apr 11 2020 03:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46847 * 2 1 4 4 C 1.53003 * 109.47441 * 174.96855 * 3 2 1 5 5 H 1.08999 * 109.46829 * 305.78298 * 4 3 2 6 6 C 1.50701 * 109.46851 * 65.77884 * 4 3 2 7 7 O 1.21283 * 119.99832 * 25.22984 * 6 4 3 8 8 N 1.34770 * 120.00148 * 205.22589 * 6 4 3 9 9 C 1.46501 * 120.00019 * 184.83894 * 8 6 4 10 10 C 1.52998 * 110.88692 * 303.88025 * 9 8 6 11 11 C 1.55161 * 111.00379 * 180.02562 * 9 8 6 12 12 C 1.54329 * 102.94077 * 277.42950 * 11 9 8 13 13 N 1.47023 * 107.27153 * 337.80747 * 12 11 9 14 14 C 1.36937 * 125.65087 * 178.99151 * 13 12 11 15 15 H 1.07998 * 119.99945 * 179.97438 * 14 13 12 16 16 C 1.38817 * 119.99625 * 359.96690 * 14 13 12 17 17 N 1.31617 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99695 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46682 * 90.00858 * 18 16 14 20 20 H 1.48499 * 109.47043 * 210.00482 * 18 16 14 21 21 H 1.48497 * 109.47191 * 330.00678 * 18 16 14 22 22 C 1.47428 * 108.70299 * 358.94137 * 13 12 11 23 23 C 1.50695 * 109.47359 * 185.78239 * 4 3 2 24 24 C 1.38225 * 119.61489 * 275.00086 * 23 4 3 25 25 C 1.38634 * 119.16051 * 180.02562 * 24 23 4 26 26 C 1.38674 * 118.41833 * 359.97438 * 25 24 23 27 27 C 1.38183 * 119.16186 * 0.02562 * 26 25 24 28 28 N 1.31849 * 119.61837 * 95.00052 * 23 4 3 29 29 H 1.09000 * 109.47242 * 60.00582 * 1 2 3 30 30 H 1.09006 * 109.46780 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47459 * 299.99968 * 1 2 3 32 32 H 1.08996 * 109.47459 * 240.00032 * 2 1 3 33 33 H 1.09000 * 109.47242 * 119.99418 * 2 1 3 34 34 H 1.09005 * 109.47055 * 54.96894 * 3 2 1 35 35 H 1.09002 * 109.47323 * 294.97452 * 3 2 1 36 36 H 0.97004 * 119.99986 * 4.84167 * 8 6 4 37 37 H 1.08996 * 109.47182 * 59.30501 * 10 9 8 38 38 H 1.09008 * 109.47013 * 179.29947 * 10 9 8 39 39 H 1.08999 * 109.46861 * 299.29884 * 10 9 8 40 40 H 1.08992 * 110.72010 * 35.78933 * 11 9 8 41 41 H 1.08995 * 110.72305 * 159.07080 * 11 9 8 42 42 H 1.08998 * 109.88241 * 97.22588 * 12 11 9 43 43 H 1.08998 * 109.88107 * 218.39061 * 12 11 9 44 44 H 0.97003 * 120.00105 * 179.97438 * 17 16 14 45 45 H 1.09004 * 110.36325 * 265.29433 * 22 13 12 46 46 H 1.08991 * 110.36733 * 142.96982 * 22 13 12 47 47 H 1.08002 * 120.42423 * 0.02717 * 24 23 4 48 48 H 1.07997 * 120.79104 * 180.25365 * 25 24 23 49 49 H 1.08003 * 120.41738 * 180.02562 * 26 25 24 50 50 H 1.08000 * 119.61462 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5647 1.4446 0.1265 5 1 3.8572 0.8688 1.0046 6 6 4.1718 0.8247 -1.1057 7 8 3.5626 0.8385 -2.1544 8 7 5.3915 0.2550 -1.0424 9 6 6.0270 -0.2527 -2.2608 10 6 5.1263 -1.2717 -2.9618 11 6 7.4190 -0.8632 -1.9491 12 6 8.3397 0.3749 -1.9155 13 7 7.6740 1.4349 -2.6868 14 6 8.1554 2.7019 -2.8824 15 1 7.5885 3.4105 -3.4679 16 6 9.3720 3.0753 -2.3280 17 7 10.0631 2.2115 -1.6148 18 14 10.0284 4.8039 -2.5942 19 1 9.5430 5.6906 -1.5063 20 1 11.5131 4.7764 -2.5851 21 1 9.5508 5.3186 -3.9027 22 6 6.4030 0.9076 -3.2158 23 6 4.0551 2.8623 0.2693 24 6 4.2773 3.6254 -0.8616 25 6 4.7290 4.9284 -0.7193 26 6 4.9406 5.4174 0.5610 27 6 4.6966 4.5954 1.6446 28 7 4.2672 3.3605 1.4715 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6048 1.9817 0.8415 35 1 1.7520 1.9298 -0.9316 36 1 5.8487 0.1812 -0.1900 37 1 4.1773 -0.8014 -3.2191 38 1 5.6151 -1.6245 -3.8700 39 1 4.9450 -2.1152 -2.2956 40 1 7.4121 -1.3650 -0.9816 41 1 7.7246 -1.5497 -2.7387 42 1 8.4848 0.7012 -0.8857 43 1 9.3011 0.1343 -2.3693 44 1 10.9134 2.4723 -1.2277 45 1 6.5403 0.5342 -4.2307 46 1 5.6342 1.6799 -3.1955 47 1 4.1013 3.2119 -1.8437 48 1 4.9073 5.5493 -1.5848 49 1 5.2917 6.4279 0.7092 50 1 4.8593 4.9686 2.6449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671667096.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:48 Heat of formation + Delta-G solvation = 12.031448 kcal Electronic energy + Delta-G solvation = -30383.384782 eV Core-core repulsion = 26603.741917 eV Total energy + Delta-G solvation = -3779.642865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.64086 -39.43839 -37.56050 -35.30063 -33.89517 -32.71280 -32.15300 -31.63842 -29.98715 -28.99210 -28.60100 -25.68081 -25.00306 -23.68661 -23.39366 -22.44192 -21.50132 -20.37123 -19.77055 -19.01840 -17.43892 -16.74394 -16.66910 -15.86621 -15.55206 -15.22313 -14.90093 -14.70277 -14.55434 -14.25183 -13.79772 -13.53460 -13.34954 -13.26462 -13.15484 -12.90708 -12.67427 -12.30872 -12.01911 -11.92677 -11.82383 -11.69950 -11.66341 -11.56284 -11.22553 -10.93099 -10.88631 -10.87435 -10.62298 -10.36100 -10.34299 -10.09909 -9.99639 -9.67589 -9.63426 -9.32547 -9.19392 -8.75165 -8.65530 -8.50708 -6.80232 -5.71110 -3.02829 1.26658 1.49673 2.87449 3.37173 3.42790 3.44598 3.50235 3.94201 4.37233 4.49268 4.73409 4.92490 4.95060 5.07153 5.07632 5.12771 5.24083 5.29467 5.32846 5.40484 5.45740 5.48448 5.55342 5.63318 5.72752 5.74475 5.77947 5.84979 5.89580 5.95093 6.04836 6.07224 6.15213 6.19810 6.26139 6.32787 6.36192 6.39031 6.41845 6.43336 6.55355 6.68942 6.77866 6.86558 7.13697 7.53692 7.57333 7.79382 7.92923 8.10871 8.25677 8.58098 9.22735 9.83267 10.49549 11.40855 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.010551 B = 0.005287 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.086347 B = 5294.826774 C = 7214.121274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.093 4.093 4 C -0.056 4.056 5 H 0.103 0.897 6 C 0.529 3.471 7 O -0.537 6.537 8 N -0.697 5.697 9 C 0.157 3.843 10 C -0.153 4.153 11 C -0.148 4.148 12 C 0.178 3.822 13 N -0.601 5.601 14 C -0.219 4.219 15 H 0.074 0.926 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.136 3.864 23 C 0.137 3.863 24 C -0.146 4.146 25 C -0.064 4.064 26 C -0.172 4.172 27 C 0.096 3.904 28 N -0.481 5.481 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.399 0.601 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.043 0.957 44 H 0.251 0.749 45 H 0.025 0.975 46 H 0.045 0.955 47 H 0.137 0.863 48 H 0.134 0.866 49 H 0.132 0.868 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.330 -2.536 5.477 15.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.132 4.132 4 C -0.079 4.079 5 H 0.121 0.879 6 C 0.314 3.686 7 O -0.414 6.414 8 N -0.346 5.346 9 C 0.070 3.930 10 C -0.211 4.211 11 C -0.186 4.186 12 C 0.053 3.947 13 N -0.327 5.327 14 C -0.348 4.348 15 H 0.092 0.908 16 C -0.203 4.203 17 N -0.570 5.570 18 Si 0.737 3.263 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.009 3.991 23 C -0.001 4.001 24 C -0.166 4.166 25 C -0.090 4.090 26 C -0.192 4.192 27 C -0.061 4.061 28 N -0.190 5.190 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.063 0.937 47 H 0.155 0.845 48 H 0.152 0.848 49 H 0.150 0.850 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.688 -2.912 5.492 15.949 hybrid contribution 1.195 1.563 -0.357 2.000 sum -13.493 -1.349 5.135 14.500 Atomic orbital electron populations 1.21721 0.95811 1.01366 1.01654 1.21553 0.95943 0.96451 1.02323 1.21433 0.90896 0.97784 1.03051 1.20235 0.97276 0.92168 0.98172 0.87869 1.20081 0.81212 0.77676 0.89641 1.90609 1.61572 1.58399 1.30868 1.45863 1.17785 1.60001 1.10978 1.21498 0.91770 0.94468 0.85252 1.22069 1.01532 0.97764 0.99772 1.23233 0.94522 0.99931 1.00954 1.21140 0.92822 0.84000 0.96706 1.44409 1.18499 1.09967 1.59853 1.18987 1.01753 0.86998 1.27059 0.90799 1.24731 0.97416 0.97904 1.00285 1.69943 1.15046 1.33194 1.38861 0.86200 0.78175 0.84261 0.77686 1.21739 1.21688 1.20746 1.21836 0.89382 0.93875 0.94039 1.20459 0.96127 0.94737 0.88784 1.22035 0.99354 0.94872 1.00341 1.21573 0.94335 0.95379 0.97739 1.22112 1.01802 1.01573 0.93721 1.22600 0.95239 0.89169 0.99099 1.67343 1.12298 1.14109 1.25218 0.92679 0.92926 0.92980 0.91158 0.92268 0.91290 0.90444 0.76740 0.89969 0.92178 0.93304 0.91794 0.90923 0.93743 0.93879 0.93901 0.95747 0.93656 0.84492 0.84838 0.85002 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.13 -1.38 5.66 -26.73 -0.15 -1.53 16 3 C -0.09 -1.15 4.36 -26.73 -0.12 -1.27 16 4 C -0.06 -0.79 2.50 -92.92 -0.23 -1.02 16 5 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 6 C 0.53 8.42 4.41 -10.99 -0.05 8.38 16 7 O -0.54 -9.48 11.62 5.55 0.06 -9.42 16 8 N -0.70 -11.42 5.18 -45.62 -0.24 -11.66 16 9 C 0.16 2.74 0.83 -129.67 -0.11 2.63 16 10 C -0.15 -2.33 8.51 37.16 0.32 -2.02 16 11 C -0.15 -2.63 5.97 -24.89 -0.15 -2.78 16 12 C 0.18 4.19 5.36 -3.06 -0.02 4.17 16 13 N -0.60 -15.08 3.39 -170.07 -0.58 -15.66 16 14 C -0.22 -6.07 10.28 -15.06 -0.15 -6.23 16 15 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 16 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 17 N -0.92 -26.76 10.31 55.49 0.57 -26.19 16 18 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.14 2.90 6.19 -2.53 -0.02 2.89 16 23 C 0.14 2.17 5.78 -82.59 -0.48 1.69 16 24 C -0.15 -2.43 9.18 -39.44 -0.36 -2.79 16 25 C -0.06 -0.98 10.18 -39.27 -0.40 -1.38 16 26 C -0.17 -2.38 10.11 -39.44 -0.40 -2.77 16 27 C 0.10 1.34 11.18 -17.55 -0.20 1.14 16 28 N -0.48 -7.50 10.27 -9.48 -0.10 -7.60 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.89 7.07 -51.93 -0.37 0.52 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.05 7.65 -51.93 -0.40 0.65 16 36 H 0.40 6.24 8.51 -40.82 -0.35 5.89 16 37 H 0.08 1.35 5.87 -51.93 -0.30 1.05 16 38 H 0.06 0.86 8.13 -51.92 -0.42 0.44 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 41 H 0.07 1.21 8.04 -51.93 -0.42 0.80 16 42 H 0.04 1.16 7.38 -51.93 -0.38 0.77 16 43 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.02 0.53 8.03 -51.93 -0.42 0.12 16 46 H 0.05 1.02 7.02 -51.93 -0.36 0.66 16 47 H 0.14 2.42 6.75 -52.49 -0.35 2.07 16 48 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 49 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 50 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 394.90 15.07 5.95 5.95 Total: -1.00 -31.30 394.90 -9.94 -41.24 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -8.36 Total: 8.48 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.24 Total: -2.24 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -0.34 Total: -61.10 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.06 Total: -9.42 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.30 -9.94 -41.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671667096.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.276 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds