Wall clock time and date at job start Sat Apr 11 2020 03:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46857 * 2 1 4 4 C 1.53002 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46900 * 304.99607 * 4 3 2 6 6 C 1.50704 * 109.46653 * 184.99932 * 4 3 2 7 7 O 1.21279 * 119.99650 * 239.99340 * 6 4 3 8 8 N 1.34770 * 120.00062 * 60.00063 * 6 4 3 9 9 C 1.46500 * 120.00117 * 179.97438 * 8 6 4 10 10 C 1.53002 * 110.63918 * 303.14081 * 9 8 6 11 11 C 1.55155 * 110.72249 * 179.97438 * 9 8 6 12 12 C 1.54912 * 101.57968 * 277.13822 * 11 9 8 13 13 N 1.47426 * 104.83261 * 322.99067 * 12 11 9 14 14 C 1.36941 * 125.64875 * 203.86480 * 13 12 11 15 15 H 1.08001 * 120.00063 * 180.02562 * 14 13 12 16 16 C 1.38810 * 119.99930 * 0.02562 * 14 13 12 17 17 N 1.31617 * 120.00219 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00125 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46763 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47257 * 119.99870 * 18 16 14 21 21 H 1.48497 * 109.47230 * 239.99856 * 18 16 14 22 22 C 1.47024 * 108.70449 * 24.12870 * 13 12 11 23 23 C 1.50702 * 109.47407 * 64.99786 * 4 3 2 24 24 C 1.38222 * 119.61770 * 84.99897 * 23 4 3 25 25 C 1.38622 * 119.16229 * 179.97438 * 24 23 4 26 26 C 1.38676 * 118.42145 * 0.02562 * 25 24 23 27 27 C 1.38181 * 119.15868 * 0.02562 * 26 25 24 28 28 N 1.31851 * 119.61588 * 264.72497 * 23 4 3 29 29 H 1.08998 * 109.47278 * 60.00220 * 1 2 3 30 30 H 1.09005 * 109.46984 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47491 * 299.99905 * 1 2 3 32 32 H 1.09005 * 109.47021 * 240.00222 * 2 1 3 33 33 H 1.08998 * 109.47278 * 119.99780 * 2 1 3 34 34 H 1.08994 * 109.46993 * 59.99790 * 3 2 1 35 35 H 1.09007 * 109.47008 * 299.99690 * 3 2 1 36 36 H 0.97006 * 120.00250 * 359.97438 * 8 6 4 37 37 H 1.08997 * 109.46866 * 296.85554 * 10 9 8 38 38 H 1.08995 * 109.47083 * 56.85685 * 10 9 8 39 39 H 1.09007 * 109.46846 * 176.85423 * 10 9 8 40 40 H 1.08997 * 111.00368 * 159.07015 * 11 9 8 41 41 H 1.08992 * 111.03872 * 35.22479 * 11 9 8 42 42 H 1.09002 * 110.36496 * 204.15483 * 12 11 9 43 43 H 1.08997 * 110.36790 * 81.83118 * 12 11 9 44 44 H 0.97004 * 120.00482 * 180.02562 * 17 16 14 45 45 H 1.08995 * 109.88316 * 118.35549 * 22 13 12 46 46 H 1.09002 * 109.88101 * 239.52444 * 22 13 12 47 47 H 1.08005 * 120.42022 * 359.97438 * 24 23 4 48 48 H 1.08002 * 120.79060 * 179.97438 * 25 24 23 49 49 H 1.07997 * 120.42034 * 180.02562 * 26 25 24 50 50 H 1.08000 * 119.61539 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8531 0.8410 6 6 4.0722 2.8581 0.1232 7 8 4.7692 3.3326 -0.7486 8 7 3.7470 3.5965 1.2027 9 6 4.2357 4.9723 1.3233 10 6 5.7634 5.0106 1.2477 11 6 3.7345 5.6193 2.6414 12 6 2.3146 6.0885 2.2372 13 7 2.4508 6.5447 0.8419 14 6 1.6306 7.4424 0.2120 15 1 1.8150 7.7125 -0.8172 16 6 0.5621 8.0051 0.8965 17 7 0.3376 7.6764 2.1510 18 14 -0.5572 9.2291 0.0371 19 1 -0.0941 9.4271 -1.3599 20 1 -1.9473 8.7068 0.0279 21 1 -0.5204 10.5257 0.7599 22 6 3.6093 5.8715 0.2367 23 6 4.0719 0.8423 -1.2886 24 6 4.2003 1.6404 -2.4098 25 6 4.6634 1.0785 -3.5894 26 6 4.9809 -0.2714 -3.5975 27 6 4.8257 -1.0064 -2.4377 28 7 4.3884 -0.4369 -1.3314 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8901 36 1 3.1894 3.2170 1.8998 37 1 6.1827 4.4614 2.0907 38 1 6.0926 4.5519 0.3154 39 1 6.1031 6.0457 1.2831 40 1 4.3602 6.4661 2.9235 41 1 3.6891 4.8848 3.4453 42 1 1.9908 6.9108 2.8752 43 1 1.6095 5.2596 2.2982 44 1 -0.4093 8.0693 2.6293 45 1 3.2850 5.2623 -0.6069 46 1 4.3364 6.6123 -0.0960 47 1 3.9432 2.6885 -2.3674 48 1 4.7735 1.6776 -4.4813 49 1 5.3448 -0.7422 -4.4987 50 1 5.0711 -2.0582 -2.4356 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671667097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:52 Heat of formation + Delta-G solvation = 20.461611 kcal Electronic energy + Delta-G solvation = -29716.101540 eV Core-core repulsion = 25936.824234 eV Total energy + Delta-G solvation = -3779.277306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.84344 -39.54899 -37.47848 -35.74193 -34.06035 -32.51161 -32.12977 -31.83185 -30.14139 -28.92160 -28.62767 -25.70888 -25.09940 -23.73047 -23.54247 -22.67297 -21.19990 -20.48071 -20.11755 -19.01374 -17.31620 -16.91582 -16.71448 -16.02711 -15.76040 -15.32012 -15.19029 -14.68944 -14.66788 -14.06550 -13.86648 -13.75242 -13.43182 -13.33633 -12.98379 -12.91182 -12.75082 -12.44518 -12.26926 -12.09071 -12.01127 -11.71286 -11.58056 -11.43576 -11.14931 -11.09898 -10.93985 -10.88097 -10.66900 -10.40201 -10.34979 -10.06963 -9.95033 -9.80159 -9.64517 -9.44592 -9.11893 -8.87796 -8.67904 -8.62017 -6.82315 -5.66482 -3.06719 1.12490 1.34712 2.81018 3.30755 3.39200 3.45363 3.47466 3.84235 4.21495 4.48227 4.56657 4.81761 4.87427 4.92823 5.01092 5.08169 5.12184 5.20564 5.23401 5.38478 5.39021 5.48942 5.55190 5.56688 5.59979 5.69190 5.73607 5.82220 5.85230 5.91451 6.03951 6.07950 6.15010 6.16755 6.21394 6.23815 6.28852 6.33438 6.35773 6.45665 6.51843 6.69578 6.75385 6.79768 7.11407 7.43931 7.62641 7.77726 7.84708 7.97785 8.33928 8.47271 9.22072 9.82887 10.47527 11.37917 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.003488 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.745962 B = 8025.702260 C = 8488.572733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.106 4.106 4 C -0.058 4.058 5 H 0.112 0.888 6 C 0.522 3.478 7 O -0.533 6.533 8 N -0.702 5.702 9 C 0.160 3.840 10 C -0.152 4.152 11 C -0.147 4.147 12 C 0.153 3.847 13 N -0.603 5.603 14 C -0.217 4.217 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.923 5.923 18 Si 0.912 3.088 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.139 3.861 23 C 0.140 3.860 24 C -0.127 4.127 25 C -0.086 4.086 26 C -0.176 4.176 27 C 0.085 3.915 28 N -0.478 5.478 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.399 0.601 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.011 0.989 44 H 0.251 0.749 45 H 0.030 0.970 46 H 0.029 0.971 47 H 0.153 0.847 48 H 0.131 0.869 49 H 0.129 0.871 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.295 -16.801 -3.757 18.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.144 4.144 4 C -0.080 4.080 5 H 0.130 0.870 6 C 0.307 3.693 7 O -0.410 6.410 8 N -0.352 5.352 9 C 0.074 3.926 10 C -0.211 4.211 11 C -0.186 4.186 12 C 0.028 3.972 13 N -0.330 5.330 14 C -0.346 4.346 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.573 5.573 18 Si 0.743 3.257 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.012 3.988 23 C 0.002 3.998 24 C -0.146 4.146 25 C -0.112 4.112 26 C -0.196 4.196 27 C -0.072 4.072 28 N -0.187 5.187 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.233 0.767 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.029 0.971 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.047 0.953 47 H 0.171 0.829 48 H 0.149 0.851 49 H 0.147 0.853 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.529 -16.808 -3.593 18.764 hybrid contribution -0.743 0.855 -0.934 1.468 sum 6.786 -15.953 -4.527 17.918 Atomic orbital electron populations 1.21778 0.95769 1.01375 1.02134 1.21484 0.95613 0.95811 1.02570 1.21602 0.90828 0.98217 1.03789 1.20174 0.97555 0.93758 0.96561 0.87023 1.20134 0.80228 0.87024 0.81881 1.90617 1.38242 1.72832 1.39346 1.45945 1.52657 1.13970 1.22587 1.21363 0.93251 0.80269 0.97740 1.22071 0.94102 1.02126 1.02761 1.23361 1.01436 0.99579 0.94232 1.21923 0.89024 0.99007 0.87198 1.44507 1.30242 1.48791 1.09421 1.19127 1.04935 1.15044 0.95479 0.90547 1.24746 0.98869 1.00658 0.96412 1.69787 1.31383 1.46960 1.09133 0.86022 0.80450 0.80727 0.78479 1.20562 1.21815 1.21759 1.21580 0.90112 0.93154 0.93909 1.20447 0.95756 0.89439 0.94128 1.22455 0.97622 1.02284 0.92265 1.21639 0.96407 0.94850 0.98345 1.22096 1.02313 0.95301 0.99895 1.22569 0.96442 0.99947 0.88240 1.67351 1.10814 1.11691 1.28874 0.92806 0.92918 0.92446 0.91822 0.91694 0.90314 0.91043 0.76695 0.93250 0.90497 0.91859 0.90560 0.91876 0.87528 0.97127 0.93861 0.95234 0.95269 0.82925 0.85113 0.85298 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.26 5.72 -26.73 -0.15 -1.42 16 3 C -0.11 -1.27 4.62 -26.73 -0.12 -1.40 16 4 C -0.06 -0.74 2.52 -92.92 -0.23 -0.98 16 5 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 6 C 0.52 7.92 6.15 -10.99 -0.07 7.85 16 7 O -0.53 -9.37 10.08 5.56 0.06 -9.31 16 8 N -0.70 -10.54 5.00 -45.91 -0.23 -10.77 16 9 C 0.16 2.75 0.81 -129.98 -0.10 2.65 16 10 C -0.15 -2.37 8.44 37.16 0.31 -2.06 16 11 C -0.15 -2.60 6.07 -24.58 -0.15 -2.75 16 12 C 0.15 3.53 5.86 -2.53 -0.01 3.52 16 13 N -0.60 -15.21 3.39 -170.07 -0.58 -15.79 16 14 C -0.22 -6.05 10.27 -15.06 -0.15 -6.20 16 15 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 16 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 17 N -0.92 -26.34 10.09 55.49 0.56 -25.78 16 18 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.14 3.00 6.20 -3.06 -0.02 2.98 16 23 C 0.14 1.92 4.88 -82.59 -0.40 1.51 16 24 C -0.13 -1.77 8.27 -39.45 -0.33 -2.10 16 25 C -0.09 -1.01 10.18 -39.28 -0.40 -1.41 16 26 C -0.18 -1.79 10.11 -39.44 -0.40 -2.19 16 27 C 0.09 0.92 11.18 -17.55 -0.20 0.73 16 28 N -0.48 -6.22 9.63 -9.48 -0.09 -6.31 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.75 6.90 -51.93 -0.36 0.39 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.92 7.43 -51.93 -0.39 0.54 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.40 5.21 7.85 -40.82 -0.32 4.89 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.29 5.97 -51.93 -0.31 0.98 16 39 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 40 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 41 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.11 2.80 5.89 -51.93 -0.31 2.49 16 43 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.03 0.68 6.90 -51.93 -0.36 0.32 16 46 H 0.03 0.65 7.78 -51.93 -0.40 0.25 16 47 H 0.15 2.39 5.94 -52.48 -0.31 2.08 16 48 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 49 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 50 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 390.03 15.07 5.88 5.88 Total: -1.00 -31.26 390.03 -9.79 -41.05 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -8.21 Total: 6.91 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.16 Total: -2.89 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.34 Total: -58.64 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.06 Total: -9.31 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.26 -9.79 -41.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671667097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.517 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds