Wall clock time and date at job start Sat Apr 11 2020 03:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46857 * 2 1 4 4 C 1.53002 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46900 * 304.99607 * 4 3 2 6 6 C 1.50704 * 109.46653 * 184.99932 * 4 3 2 7 7 O 1.21279 * 119.99650 * 239.99340 * 6 4 3 8 8 N 1.34770 * 120.00062 * 60.00063 * 6 4 3 9 9 C 1.46500 * 120.00117 * 179.97438 * 8 6 4 10 10 C 1.53002 * 110.63918 * 303.14081 * 9 8 6 11 11 C 1.55155 * 110.72249 * 179.97438 * 9 8 6 12 12 C 1.54912 * 101.57968 * 277.13822 * 11 9 8 13 13 N 1.47426 * 104.83261 * 322.99067 * 12 11 9 14 14 C 1.36941 * 125.64875 * 203.86480 * 13 12 11 15 15 H 1.08001 * 120.00063 * 180.02562 * 14 13 12 16 16 C 1.38810 * 119.99930 * 0.02562 * 14 13 12 17 17 N 1.31617 * 120.00219 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00125 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46763 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47257 * 119.99870 * 18 16 14 21 21 H 1.48497 * 109.47230 * 239.99856 * 18 16 14 22 22 C 1.47024 * 108.70449 * 24.12870 * 13 12 11 23 23 C 1.50702 * 109.47407 * 64.99786 * 4 3 2 24 24 C 1.38222 * 119.61770 * 84.99897 * 23 4 3 25 25 C 1.38622 * 119.16229 * 179.97438 * 24 23 4 26 26 C 1.38676 * 118.42145 * 0.02562 * 25 24 23 27 27 C 1.38181 * 119.15868 * 0.02562 * 26 25 24 28 28 N 1.31851 * 119.61588 * 264.72497 * 23 4 3 29 29 H 1.08998 * 109.47278 * 60.00220 * 1 2 3 30 30 H 1.09005 * 109.46984 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47491 * 299.99905 * 1 2 3 32 32 H 1.09005 * 109.47021 * 240.00222 * 2 1 3 33 33 H 1.08998 * 109.47278 * 119.99780 * 2 1 3 34 34 H 1.08994 * 109.46993 * 59.99790 * 3 2 1 35 35 H 1.09007 * 109.47008 * 299.99690 * 3 2 1 36 36 H 0.97006 * 120.00250 * 359.97438 * 8 6 4 37 37 H 1.08997 * 109.46866 * 296.85554 * 10 9 8 38 38 H 1.08995 * 109.47083 * 56.85685 * 10 9 8 39 39 H 1.09007 * 109.46846 * 176.85423 * 10 9 8 40 40 H 1.08997 * 111.00368 * 159.07015 * 11 9 8 41 41 H 1.08992 * 111.03872 * 35.22479 * 11 9 8 42 42 H 1.09002 * 110.36496 * 204.15483 * 12 11 9 43 43 H 1.08997 * 110.36790 * 81.83118 * 12 11 9 44 44 H 0.97004 * 120.00482 * 180.02562 * 17 16 14 45 45 H 1.08995 * 109.88316 * 118.35549 * 22 13 12 46 46 H 1.09002 * 109.88101 * 239.52444 * 22 13 12 47 47 H 1.08005 * 120.42022 * 359.97438 * 24 23 4 48 48 H 1.08002 * 120.79060 * 179.97438 * 25 24 23 49 49 H 1.07997 * 120.42034 * 180.02562 * 26 25 24 50 50 H 1.08000 * 119.61539 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8531 0.8410 6 6 4.0722 2.8581 0.1232 7 8 4.7692 3.3326 -0.7486 8 7 3.7470 3.5965 1.2027 9 6 4.2357 4.9723 1.3233 10 6 5.7634 5.0106 1.2477 11 6 3.7345 5.6193 2.6414 12 6 2.3146 6.0885 2.2372 13 7 2.4508 6.5447 0.8419 14 6 1.6306 7.4424 0.2120 15 1 1.8150 7.7125 -0.8172 16 6 0.5621 8.0051 0.8965 17 7 0.3376 7.6764 2.1510 18 14 -0.5572 9.2291 0.0371 19 1 -0.0941 9.4271 -1.3599 20 1 -1.9473 8.7068 0.0279 21 1 -0.5204 10.5257 0.7599 22 6 3.6093 5.8715 0.2367 23 6 4.0719 0.8423 -1.2886 24 6 4.2003 1.6404 -2.4098 25 6 4.6634 1.0785 -3.5894 26 6 4.9809 -0.2714 -3.5975 27 6 4.8257 -1.0064 -2.4377 28 7 4.3884 -0.4369 -1.3314 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8901 36 1 3.1894 3.2170 1.8998 37 1 6.1827 4.4614 2.0907 38 1 6.0926 4.5519 0.3154 39 1 6.1031 6.0457 1.2831 40 1 4.3602 6.4661 2.9235 41 1 3.6891 4.8848 3.4453 42 1 1.9908 6.9108 2.8752 43 1 1.6095 5.2596 2.2982 44 1 -0.4093 8.0693 2.6293 45 1 3.2850 5.2623 -0.6069 46 1 4.3364 6.6123 -0.0960 47 1 3.9432 2.6885 -2.3674 48 1 4.7735 1.6776 -4.4813 49 1 5.3448 -0.7422 -4.4987 50 1 5.0711 -2.0582 -2.4356 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671667097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:51 Heat of formation + Delta-G solvation = 2.149738 kcal Electronic energy + Delta-G solvation = -29716.895602 eV Core-core repulsion = 25936.824234 eV Total energy + Delta-G solvation = -3780.071368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.94304 -40.71724 -38.95577 -36.75982 -35.75261 -33.67239 -33.36635 -32.98795 -31.73073 -30.40205 -29.82592 -27.54439 -26.11239 -25.38541 -24.45963 -23.75333 -22.31125 -22.10078 -21.35932 -20.41140 -18.99880 -18.15233 -17.84562 -17.21015 -16.94379 -16.68642 -16.46336 -16.22738 -15.74371 -15.54512 -15.23758 -15.02516 -14.62014 -14.40366 -14.27781 -14.03846 -13.98686 -13.81830 -13.56239 -13.37145 -13.29908 -13.12666 -13.00457 -12.82860 -12.77848 -12.39560 -12.11915 -12.05838 -12.03507 -12.00015 -11.91277 -11.67764 -11.56871 -11.47072 -10.79568 -10.74830 -10.39904 -10.32254 -9.98087 -9.81340 -8.87426 -7.78491 -5.21387 0.21966 0.42580 1.45282 1.45460 1.55849 1.60601 2.12596 2.48187 2.91682 3.25981 3.31251 3.48334 3.69828 3.72003 3.91885 3.96603 4.02733 4.06135 4.10531 4.18264 4.23990 4.28480 4.32511 4.47583 4.64206 4.64843 4.67357 4.70244 4.76383 4.81878 4.85933 4.91168 4.91500 4.97609 5.02748 5.03149 5.10626 5.20592 5.26563 5.32851 5.33923 5.39254 5.43971 5.45413 5.62849 5.70208 5.81682 5.85287 6.31674 6.60717 7.05573 7.11863 7.27792 7.77981 8.41316 9.22997 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.003488 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.745962 B = 8025.702260 C = 8488.572733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.101 4.101 4 C -0.048 4.048 5 H 0.130 0.870 6 C 0.520 3.480 7 O -0.557 6.557 8 N -0.698 5.698 9 C 0.172 3.828 10 C -0.143 4.143 11 C -0.129 4.129 12 C 0.156 3.844 13 N -0.622 5.622 14 C -0.240 4.240 15 H 0.069 0.931 16 C -0.058 4.058 17 N -0.942 5.942 18 Si 0.974 3.026 19 H -0.274 1.274 20 H -0.290 1.290 21 H -0.288 1.288 22 C 0.139 3.861 23 C 0.126 3.874 24 C -0.152 4.152 25 C -0.094 4.094 26 C -0.167 4.167 27 C 0.081 3.919 28 N -0.490 5.490 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.410 0.590 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.074 0.926 43 H -0.004 1.004 44 H 0.248 0.752 45 H 0.009 0.991 46 H 0.020 0.980 47 H 0.125 0.875 48 H 0.146 0.854 49 H 0.165 0.835 50 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.223 -18.907 -3.596 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.139 4.139 4 C -0.070 4.070 5 H 0.147 0.853 6 C 0.306 3.694 7 O -0.437 6.437 8 N -0.349 5.349 9 C 0.085 3.915 10 C -0.201 4.201 11 C -0.167 4.167 12 C 0.032 3.968 13 N -0.348 5.348 14 C -0.369 4.369 15 H 0.087 0.913 16 C -0.251 4.251 17 N -0.592 5.592 18 Si 0.803 3.197 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.214 1.214 22 C 0.013 3.987 23 C -0.011 4.011 24 C -0.172 4.172 25 C -0.120 4.120 26 C -0.187 4.187 27 C -0.076 4.076 28 N -0.199 5.199 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.246 0.754 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.014 0.986 44 H 0.058 0.942 45 H 0.027 0.973 46 H 0.038 0.962 47 H 0.143 0.857 48 H 0.163 0.837 49 H 0.182 0.818 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.463 -18.931 -3.422 21.017 hybrid contribution -1.023 1.473 -1.095 2.101 sum 7.440 -17.458 -4.516 19.507 Atomic orbital electron populations 1.21777 0.95398 1.02159 1.01660 1.21404 0.95831 0.94587 1.02728 1.21554 0.90510 0.99102 1.02730 1.20104 0.97625 0.92042 0.97181 0.85275 1.20585 0.79649 0.87915 0.81228 1.90618 1.39349 1.73594 1.40096 1.45854 1.52897 1.13019 1.23135 1.21139 0.94220 0.80582 0.95548 1.21981 0.92317 1.02643 1.03164 1.23208 0.97562 1.00648 0.95303 1.21738 0.92106 0.97251 0.85734 1.44769 1.30736 1.48694 1.10590 1.19379 1.05937 1.16003 0.95600 0.91303 1.25493 1.00130 1.02343 0.97182 1.70015 1.31523 1.47617 1.10019 0.85070 0.78353 0.78469 0.77794 1.19848 1.21730 1.21448 1.21651 0.88992 0.93214 0.94835 1.20467 0.96558 0.89968 0.94113 1.22330 0.99700 1.01311 0.93887 1.21913 0.95945 0.96100 0.98072 1.22463 1.00802 0.94344 1.01068 1.23224 0.95098 1.01472 0.87806 1.67386 1.11419 1.11078 1.30050 0.93825 0.91496 0.92394 0.92704 0.90323 0.90080 0.93346 0.75383 0.90616 0.91858 0.91584 0.90020 0.88120 0.90778 0.98644 0.94216 0.97343 0.96248 0.85685 0.83651 0.81776 0.79850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.91 71.98 0.71 -2.28 16 2 C -0.11 -2.22 5.72 30.60 0.17 -2.04 16 3 C -0.10 -2.42 4.62 30.60 0.14 -2.28 16 4 C -0.05 -1.20 2.52 -12.28 -0.03 -1.23 16 5 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 6 C 0.52 15.85 6.15 87.66 0.54 16.39 16 7 O -0.56 -20.21 10.08 -3.03 -0.03 -20.24 16 8 N -0.70 -20.56 5.00 -417.56 -2.09 -22.65 16 9 C 0.17 5.83 0.81 4.79 0.00 5.83 16 10 C -0.14 -4.24 8.44 71.98 0.61 -3.64 16 11 C -0.13 -4.36 6.07 31.99 0.19 -4.17 16 12 C 0.16 7.32 5.86 86.86 0.51 7.83 16 13 N -0.62 -32.32 3.39 -691.97 -2.35 -34.67 16 14 C -0.24 -13.78 10.27 84.03 0.86 -12.92 16 15 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 16 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 17 N -0.94 -54.91 10.09 21.65 0.22 -54.69 16 18 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 22 C 0.14 6.20 6.20 86.73 0.54 6.74 16 23 C 0.13 3.41 4.88 42.55 0.21 3.62 16 24 C -0.15 -4.38 8.27 22.36 0.18 -4.20 16 25 C -0.09 -2.14 10.18 22.47 0.23 -1.91 16 26 C -0.17 -2.97 10.11 22.36 0.23 -2.75 16 27 C 0.08 1.55 11.18 84.67 0.95 2.49 16 28 N -0.49 -11.94 9.63 -183.89 -1.77 -13.71 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.24 6.90 -2.38 -0.02 1.22 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.88 7.43 -2.39 -0.02 1.87 16 35 H 0.05 1.37 8.14 -2.38 -0.02 1.36 16 36 H 0.41 10.18 7.85 -92.70 -0.73 9.45 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 2.09 5.97 -2.39 -0.01 2.08 16 39 H 0.07 1.92 8.07 -2.38 -0.02 1.90 16 40 H 0.08 2.73 8.05 -2.39 -0.02 2.71 16 41 H 0.10 2.69 8.07 -2.39 -0.02 2.67 16 42 H 0.07 3.99 5.89 -2.39 -0.01 3.98 16 43 H 0.00 -0.22 8.14 -2.39 -0.02 -0.23 16 44 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 45 H 0.01 0.41 6.90 -2.39 -0.02 0.40 16 46 H 0.02 0.90 7.78 -2.39 -0.02 0.88 16 47 H 0.13 4.24 5.94 -2.91 -0.02 4.22 16 48 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 49 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 50 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -70.13 390.03 2.72 -67.41 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.20 Total: 27.87 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 6.51 Total: 2.63 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -5.99 Total: -125.72 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.03 Total: -20.24 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -70.13 2.72 -67.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671667097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.561 kcal (2) G-P(sol) polarization free energy of solvation -70.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds