Wall clock time and date at job start Sat Apr 11 2020 03:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87225 * 2 1 4 4 C 1.54323 * 109.88816 * 121.17929 * 2 1 3 5 5 H 1.09008 * 110.71752 * 23.24475 * 4 2 1 6 6 N 1.46493 * 110.72120 * 259.97639 * 4 2 1 7 7 C 1.36942 * 120.00348 * 154.99803 * 6 4 2 8 8 H 1.08002 * 119.99601 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00262 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99753 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99996 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47035 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47132 * 119.99822 * 11 9 7 14 14 H 1.48503 * 109.46801 * 239.99763 * 11 9 7 15 15 C 1.55155 * 102.94483 * 141.60864 * 4 2 1 16 16 C 1.55132 * 101.48453 * 324.33542 * 15 4 2 17 17 N 1.47026 * 109.88180 * 238.99114 * 2 1 3 18 18 C 1.34775 * 125.64805 * 61.59656 * 17 2 1 19 19 O 1.21550 * 120.00181 * 5.79389 * 18 17 2 20 20 C 1.47846 * 119.99889 * 185.78608 * 18 17 2 21 21 C 1.39570 * 120.14518 * 204.55862 * 20 18 17 22 22 C 1.37955 * 119.85489 * 179.97438 * 21 20 18 23 23 C 1.38357 * 120.14493 * 0.02562 * 22 21 20 24 24 C 1.50708 * 119.85838 * 179.97438 * 23 22 21 25 25 N 1.46902 * 109.47047 * 89.99485 * 24 23 22 26 26 C 1.46898 * 110.99989 * 170.00384 * 25 24 23 27 27 C 1.46901 * 111.00065 * 293.95979 * 25 24 23 28 28 C 1.38365 * 120.29430 * 0.24511 * 23 22 21 29 29 C 1.37964 * 120.13865 * 359.49730 * 28 23 22 30 30 H 1.09001 * 109.47077 * 179.55984 * 1 2 3 31 31 H 1.09004 * 109.47311 * 299.55422 * 1 2 3 32 32 H 1.08993 * 109.47395 * 59.55767 * 1 2 3 33 33 H 0.97001 * 120.00091 * 334.99755 * 6 4 2 34 34 H 0.97000 * 119.99833 * 180.02562 * 10 9 7 35 35 H 1.09002 * 111.00172 * 82.57038 * 15 4 2 36 36 H 1.08998 * 111.00743 * 206.39091 * 15 4 2 37 37 H 1.09000 * 110.49746 * 278.45251 * 16 15 4 38 38 H 1.09005 * 110.34119 * 156.05698 * 16 15 4 39 39 H 1.07999 * 120.07806 * 359.96056 * 21 20 18 40 40 H 1.08003 * 119.93054 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.46534 * 330.00030 * 24 23 22 42 42 H 1.08997 * 109.46851 * 209.99829 * 24 23 22 43 43 H 1.08999 * 109.47046 * 59.99777 * 26 25 24 44 44 H 1.08999 * 109.47233 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.46921 * 299.99820 * 26 25 24 46 46 H 1.08996 * 109.47221 * 59.99835 * 27 25 24 47 47 H 1.09001 * 109.47141 * 180.02562 * 27 25 24 48 48 H 1.09008 * 109.46480 * 299.99672 * 27 25 24 49 49 H 1.07997 * 119.93313 * 179.74791 * 28 23 22 50 50 H 1.08003 * 120.07291 * 180.25459 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 1.2416 5 1 1.3052 -1.4483 1.6161 6 7 2.4555 0.1927 2.2877 7 6 2.4584 -0.1997 3.5997 8 1 2.1649 -1.2052 3.8631 9 6 2.8375 0.6949 4.5910 10 7 3.1946 1.9204 4.2698 11 14 2.8420 0.1593 6.3805 12 1 2.4031 -1.2562 6.4746 13 1 4.2141 0.2904 6.9329 14 1 1.9118 1.0182 7.1566 15 6 3.2877 -1.5152 0.6901 16 6 2.8099 -1.8814 -0.7397 17 7 2.0300 -0.7123 -1.1850 18 6 1.8072 -0.3584 -2.4663 19 8 1.2322 0.6824 -2.7181 20 6 2.2624 -1.2362 -3.5654 21 6 2.5135 -0.7025 -4.8304 22 6 2.9385 -1.5270 -5.8516 23 6 3.1154 -2.8802 -5.6241 24 6 3.5794 -3.7750 -6.7444 25 7 5.0473 -3.8330 -6.7489 26 6 5.5303 -4.8729 -7.6673 27 6 5.6248 -2.5247 -7.0844 28 6 2.8629 -3.4167 -4.3739 29 6 2.4425 -2.6022 -3.3427 30 1 -0.3633 -1.0276 -0.0079 31 1 -0.3634 0.5069 0.8940 32 1 -0.3634 0.5206 -0.8859 33 1 2.7188 1.0958 2.0511 34 1 3.4599 2.5454 4.9625 35 1 4.1655 -0.8697 0.6589 36 1 3.4857 -2.4125 1.2763 37 1 2.1801 -2.7707 -0.7156 38 1 3.6655 -2.0391 -1.3964 39 1 2.3752 0.3535 -5.0096 40 1 3.1336 -1.1152 -6.8308 41 1 3.2287 -3.3767 -7.6965 42 1 3.1766 -4.7774 -6.5994 43 1 5.1861 -4.6534 -8.6779 44 1 6.6199 -4.8946 -7.6508 45 1 5.1431 -5.8425 -7.3541 46 1 5.3064 -1.7872 -6.3477 47 1 6.7125 -2.5960 -7.0811 48 1 5.2841 -2.2202 -8.0741 49 1 2.9990 -4.4744 -4.2039 50 1 2.2496 -3.0214 -2.3662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987192607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:15 Heat of formation + Delta-G solvation = 22.131260 kcal Electronic energy + Delta-G solvation = -28313.793120 eV Core-core repulsion = 24534.588216 eV Total energy + Delta-G solvation = -3779.204905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.52904 -39.24606 -37.57547 -36.95698 -34.20558 -32.50546 -31.49376 -31.09130 -30.73385 -29.13703 -27.96404 -27.27728 -25.31301 -23.86623 -23.35325 -22.54069 -22.30241 -21.12837 -20.24990 -19.21797 -17.30242 -17.13182 -16.37738 -16.11469 -15.96511 -15.85957 -15.25849 -14.72500 -14.64519 -14.58256 -14.10778 -13.78535 -13.62267 -13.48866 -13.37050 -12.97465 -12.78951 -12.75139 -12.67124 -12.43404 -12.15561 -12.06625 -11.98226 -11.81740 -11.68336 -11.44955 -11.19349 -11.09719 -10.99538 -10.80983 -10.56574 -10.23799 -10.02707 -9.79063 -9.63636 -9.12895 -9.04465 -8.95061 -8.71996 -8.38417 -7.04015 -5.82344 -3.12856 0.74096 1.22197 2.83431 3.12775 3.40487 3.46085 3.48496 3.54646 3.87499 4.36083 4.50971 4.54260 4.59901 4.76023 4.77953 4.89915 4.94149 5.00602 5.07523 5.17081 5.20243 5.22556 5.30117 5.35221 5.40687 5.44778 5.48454 5.57546 5.60559 5.62927 5.67840 5.79546 5.83216 5.93218 6.08576 6.11425 6.12976 6.23828 6.28653 6.31109 6.45442 6.54231 6.57877 6.58981 6.61087 6.69515 6.77607 6.91350 7.65310 7.74778 8.32576 8.35457 9.46440 10.00917 10.35577 11.39838 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.002307 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.251595 B =12132.262203 C =12784.177728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.079 0.921 4 C 0.177 3.823 5 H 0.068 0.932 6 N -0.714 5.714 7 C -0.243 4.243 8 H 0.073 0.927 9 C -0.011 4.011 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.157 4.157 16 C 0.094 3.906 17 N -0.603 5.603 18 C 0.569 3.431 19 O -0.540 6.540 20 C -0.122 4.122 21 C -0.064 4.064 22 C -0.123 4.123 23 C -0.062 4.062 24 C 0.091 3.909 25 N -0.541 5.541 26 C 0.024 3.976 27 C 0.018 3.982 28 C -0.107 4.107 29 C -0.096 4.096 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.025 0.975 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.025 0.975 49 H 0.128 0.872 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 -13.937 -24.230 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.097 0.903 4 C 0.065 3.935 5 H 0.086 0.914 6 N -0.354 5.354 7 C -0.374 4.374 8 H 0.091 0.909 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.199 4.199 16 C -0.029 4.029 17 N -0.335 5.335 18 C 0.358 3.642 19 O -0.419 6.419 20 C -0.125 4.125 21 C -0.083 4.083 22 C -0.142 4.142 23 C -0.063 4.063 24 C -0.036 4.036 25 N -0.265 5.265 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.125 4.125 29 C -0.114 4.114 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.044 0.956 49 H 0.146 0.854 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.501 -13.548 -23.763 27.395 hybrid contribution -0.004 0.242 0.087 0.257 sum 1.497 -13.306 -23.677 27.201 Atomic orbital electron populations 1.22037 0.94878 1.01576 1.02695 1.21993 0.94392 0.97156 0.84298 0.90316 1.21243 0.93558 0.91591 0.87115 0.91400 1.42359 1.79232 1.11885 1.01915 1.19256 1.38346 0.96924 0.82881 0.90912 1.24778 1.01945 0.95876 0.98139 1.69677 1.51128 1.04662 1.32211 0.86107 0.77210 0.77626 0.85142 1.20485 1.21832 1.21831 1.23659 1.01455 1.01814 0.92936 1.22711 0.94675 0.88125 0.97357 1.48451 1.51813 1.28442 1.04838 1.17961 0.79583 0.85273 0.81408 1.90758 1.43198 1.24550 1.83384 1.19972 1.03905 0.94116 0.94487 1.21191 0.95449 1.00486 0.91167 1.20965 1.01111 0.92996 0.99122 1.19863 0.97598 0.93832 0.95003 1.21114 0.87776 0.99351 0.95368 1.61980 1.06596 1.06332 1.51604 1.22402 1.01104 0.95239 0.93666 1.22506 1.00183 0.90915 0.99372 1.20945 0.99519 1.00050 0.92003 1.21887 0.96722 0.92692 1.00148 0.93070 0.90967 0.92225 0.77955 0.93413 0.90551 0.90454 0.91438 0.90745 0.84953 0.85909 0.93752 0.89672 0.95650 0.91135 0.91213 0.90617 0.91303 0.95630 0.85445 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.11 37.16 0.34 -2.26 16 2 C 0.13 2.25 3.18 -66.95 -0.21 2.04 16 3 H 0.08 1.61 7.72 -51.93 -0.40 1.21 16 4 C 0.18 3.36 3.13 -66.10 -0.21 3.15 16 5 H 0.07 1.28 7.80 -51.92 -0.41 0.87 16 6 N -0.71 -17.26 5.22 -51.65 -0.27 -17.53 16 7 C -0.24 -6.48 9.96 -15.06 -0.15 -6.63 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 11 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 15 C -0.16 -2.55 6.78 -24.46 -0.17 -2.72 16 16 C 0.09 1.25 5.00 -2.41 -0.01 1.24 16 17 N -0.60 -9.58 3.06 -163.98 -0.50 -10.08 16 18 C 0.57 9.39 7.39 -12.33 -0.09 9.30 16 19 O -0.54 -10.64 15.87 5.32 0.08 -10.56 16 20 C -0.12 -1.62 5.67 -104.97 -0.60 -2.21 16 21 C -0.06 -0.77 9.59 -39.19 -0.38 -1.14 16 22 C -0.12 -1.18 7.94 -39.64 -0.31 -1.49 16 23 C -0.06 -0.56 4.89 -104.53 -0.51 -1.07 16 24 C 0.09 0.66 5.11 -4.97 -0.03 0.63 16 25 N -0.54 -4.15 5.01 -252.72 -1.27 -5.42 16 26 C 0.02 0.14 9.57 60.06 0.57 0.71 16 27 C 0.02 0.13 9.13 60.07 0.55 0.68 16 28 C -0.11 -1.00 9.68 -39.63 -0.38 -1.38 16 29 C -0.10 -1.05 8.07 -39.18 -0.32 -1.37 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.05 7.08 -51.93 -0.37 0.68 16 33 H 0.39 10.13 7.57 -40.82 -0.31 9.82 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.75 6.84 -51.93 -0.36 0.39 16 38 H 0.07 0.89 6.81 -51.93 -0.35 0.54 16 39 H 0.13 1.60 7.84 -52.49 -0.41 1.19 16 40 H 0.12 0.93 8.03 -52.48 -0.42 0.51 16 41 H 0.04 0.29 8.06 -51.93 -0.42 -0.12 16 42 H 0.08 0.53 8.00 -51.93 -0.42 0.11 16 43 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 45 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 46 H 0.08 0.62 6.16 -51.93 -0.32 0.31 16 47 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 48 H 0.03 0.16 8.14 -51.92 -0.42 -0.26 16 49 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 50 H 0.14 1.39 4.59 -52.48 -0.24 1.15 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -31.65 396.72 -10.46 -42.11 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -8.19 Total: 8.46 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.00 Total: -2.94 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -1.31 Total: -59.93 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.65 -10.46 -42.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987192607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.245 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds