Wall clock time and date at job start Sat Apr 11 2020 03:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87225 * 2 1 4 4 C 1.54323 * 109.88816 * 121.17929 * 2 1 3 5 5 H 1.09008 * 110.71752 * 23.24475 * 4 2 1 6 6 N 1.46493 * 110.72120 * 259.97639 * 4 2 1 7 7 C 1.36942 * 120.00348 * 154.99803 * 6 4 2 8 8 H 1.08002 * 119.99601 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00262 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99753 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99996 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47035 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47132 * 119.99822 * 11 9 7 14 14 H 1.48503 * 109.46801 * 239.99763 * 11 9 7 15 15 C 1.55155 * 102.94483 * 141.60864 * 4 2 1 16 16 C 1.55132 * 101.48453 * 324.33542 * 15 4 2 17 17 N 1.47026 * 109.88180 * 238.99114 * 2 1 3 18 18 C 1.34775 * 125.64805 * 61.59656 * 17 2 1 19 19 O 1.21550 * 120.00181 * 5.79389 * 18 17 2 20 20 C 1.47846 * 119.99889 * 185.78608 * 18 17 2 21 21 C 1.39570 * 120.14518 * 204.55862 * 20 18 17 22 22 C 1.37955 * 119.85489 * 179.97438 * 21 20 18 23 23 C 1.38357 * 120.14493 * 0.02562 * 22 21 20 24 24 C 1.50708 * 119.85838 * 179.97438 * 23 22 21 25 25 N 1.46902 * 109.47047 * 89.99485 * 24 23 22 26 26 C 1.46898 * 110.99989 * 170.00384 * 25 24 23 27 27 C 1.46901 * 111.00065 * 293.95979 * 25 24 23 28 28 C 1.38365 * 120.29430 * 0.24511 * 23 22 21 29 29 C 1.37964 * 120.13865 * 359.49730 * 28 23 22 30 30 H 1.09001 * 109.47077 * 179.55984 * 1 2 3 31 31 H 1.09004 * 109.47311 * 299.55422 * 1 2 3 32 32 H 1.08993 * 109.47395 * 59.55767 * 1 2 3 33 33 H 0.97001 * 120.00091 * 334.99755 * 6 4 2 34 34 H 0.97000 * 119.99833 * 180.02562 * 10 9 7 35 35 H 1.09002 * 111.00172 * 82.57038 * 15 4 2 36 36 H 1.08998 * 111.00743 * 206.39091 * 15 4 2 37 37 H 1.09000 * 110.49746 * 278.45251 * 16 15 4 38 38 H 1.09005 * 110.34119 * 156.05698 * 16 15 4 39 39 H 1.07999 * 120.07806 * 359.96056 * 21 20 18 40 40 H 1.08003 * 119.93054 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.46534 * 330.00030 * 24 23 22 42 42 H 1.08997 * 109.46851 * 209.99829 * 24 23 22 43 43 H 1.08999 * 109.47046 * 59.99777 * 26 25 24 44 44 H 1.08999 * 109.47233 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.46921 * 299.99820 * 26 25 24 46 46 H 1.08996 * 109.47221 * 59.99835 * 27 25 24 47 47 H 1.09001 * 109.47141 * 180.02562 * 27 25 24 48 48 H 1.09008 * 109.46480 * 299.99672 * 27 25 24 49 49 H 1.07997 * 119.93313 * 179.74791 * 28 23 22 50 50 H 1.08003 * 120.07291 * 180.25459 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 1.2416 5 1 1.3052 -1.4483 1.6161 6 7 2.4555 0.1927 2.2877 7 6 2.4584 -0.1997 3.5997 8 1 2.1649 -1.2052 3.8631 9 6 2.8375 0.6949 4.5910 10 7 3.1946 1.9204 4.2698 11 14 2.8420 0.1593 6.3805 12 1 2.4031 -1.2562 6.4746 13 1 4.2141 0.2904 6.9329 14 1 1.9118 1.0182 7.1566 15 6 3.2877 -1.5152 0.6901 16 6 2.8099 -1.8814 -0.7397 17 7 2.0300 -0.7123 -1.1850 18 6 1.8072 -0.3584 -2.4663 19 8 1.2322 0.6824 -2.7181 20 6 2.2624 -1.2362 -3.5654 21 6 2.5135 -0.7025 -4.8304 22 6 2.9385 -1.5270 -5.8516 23 6 3.1154 -2.8802 -5.6241 24 6 3.5794 -3.7750 -6.7444 25 7 5.0473 -3.8330 -6.7489 26 6 5.5303 -4.8729 -7.6673 27 6 5.6248 -2.5247 -7.0844 28 6 2.8629 -3.4167 -4.3739 29 6 2.4425 -2.6022 -3.3427 30 1 -0.3633 -1.0276 -0.0079 31 1 -0.3634 0.5069 0.8940 32 1 -0.3634 0.5206 -0.8859 33 1 2.7188 1.0958 2.0511 34 1 3.4599 2.5454 4.9625 35 1 4.1655 -0.8697 0.6589 36 1 3.4857 -2.4125 1.2763 37 1 2.1801 -2.7707 -0.7156 38 1 3.6655 -2.0391 -1.3964 39 1 2.3752 0.3535 -5.0096 40 1 3.1336 -1.1152 -6.8308 41 1 3.2287 -3.3767 -7.6965 42 1 3.1766 -4.7774 -6.5994 43 1 5.1861 -4.6534 -8.6779 44 1 6.6199 -4.8946 -7.6508 45 1 5.1431 -5.8425 -7.3541 46 1 5.3064 -1.7872 -6.3477 47 1 6.7125 -2.5960 -7.0811 48 1 5.2841 -2.2202 -8.0741 49 1 2.9990 -4.4744 -4.2039 50 1 2.2496 -3.0214 -2.3662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987192607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:14 Heat of formation + Delta-G solvation = 1.899414 kcal Electronic energy + Delta-G solvation = -28314.670439 eV Core-core repulsion = 24534.588216 eV Total energy + Delta-G solvation = -3780.082223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66947 -40.17750 -38.80190 -37.76009 -35.97273 -33.78447 -32.78068 -32.25614 -31.83142 -30.70641 -28.46518 -28.00752 -26.92554 -25.07092 -24.76393 -23.54476 -23.19817 -21.95197 -21.60147 -20.50420 -19.18735 -18.31532 -17.55632 -17.14091 -16.78668 -16.50481 -16.38631 -16.13445 -15.65179 -15.46178 -15.34759 -15.22458 -14.93181 -14.64983 -14.45495 -14.35912 -13.98802 -13.65891 -13.49470 -13.26629 -13.20561 -13.12264 -13.03924 -12.94215 -12.71943 -12.59576 -12.52942 -12.44967 -12.24641 -12.11061 -12.06315 -11.86682 -11.66036 -11.54971 -11.01339 -10.88797 -9.93648 -9.89692 -9.64979 -9.25986 -9.02625 -7.93534 -5.23770 -0.14705 0.43110 1.50015 1.50714 1.60692 1.73239 1.88189 2.57836 2.73879 3.24985 3.34360 3.44704 3.66797 3.75892 3.81803 3.87874 4.01307 4.02766 4.17215 4.23738 4.30055 4.32472 4.38531 4.44676 4.46803 4.50035 4.60375 4.61490 4.65481 4.67799 4.77550 4.79743 4.87991 4.91490 5.02061 5.06484 5.08101 5.08617 5.18382 5.22088 5.27123 5.32583 5.41856 5.47665 5.55740 5.56907 5.91814 6.05086 6.10683 6.26573 6.49645 7.05758 7.32845 8.04528 8.28466 9.30282 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.002307 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.251595 B =12132.262203 C =12784.177728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.130 3.870 3 H 0.042 0.958 4 C 0.172 3.828 5 H 0.079 0.921 6 N -0.729 5.729 7 C -0.233 4.233 8 H 0.086 0.914 9 C -0.079 4.079 10 N -0.973 5.973 11 Si 0.974 3.026 12 H -0.260 1.260 13 H -0.296 1.296 14 H -0.298 1.298 15 C -0.149 4.149 16 C 0.102 3.898 17 N -0.603 5.603 18 C 0.564 3.436 19 O -0.585 6.585 20 C -0.145 4.145 21 C -0.078 4.078 22 C -0.118 4.118 23 C -0.055 4.055 24 C 0.092 3.908 25 N -0.556 5.556 26 C 0.024 3.976 27 C 0.018 3.982 28 C -0.103 4.103 29 C -0.093 4.093 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.370 0.630 34 H 0.249 0.751 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.141 0.859 41 H 0.052 0.948 42 H 0.101 0.899 43 H 0.031 0.969 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.033 0.967 49 H 0.155 0.845 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 -18.024 -25.673 31.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.060 0.940 4 C 0.063 3.937 5 H 0.096 0.904 6 N -0.368 5.368 7 C -0.365 4.365 8 H 0.104 0.896 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.804 3.196 12 H -0.184 1.184 13 H -0.224 1.224 14 H -0.226 1.226 15 C -0.190 4.190 16 C -0.020 4.020 17 N -0.335 5.335 18 C 0.356 3.644 19 O -0.467 6.467 20 C -0.148 4.148 21 C -0.098 4.098 22 C -0.137 4.137 23 C -0.056 4.056 24 C -0.035 4.035 25 N -0.280 5.280 26 C -0.123 4.123 27 C -0.130 4.130 28 C -0.122 4.122 29 C -0.111 4.111 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.202 0.798 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.137 0.863 40 H 0.159 0.841 41 H 0.071 0.929 42 H 0.119 0.881 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.052 0.948 49 H 0.172 0.828 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.748 -17.719 -25.241 30.889 hybrid contribution -0.064 1.456 0.371 1.504 sum 1.684 -16.263 -24.869 29.763 Atomic orbital electron populations 1.21927 0.94050 1.02618 1.01559 1.21715 0.94985 0.95526 0.85208 0.93964 1.21441 0.95048 0.91032 0.86219 0.90355 1.42545 1.79597 1.12115 1.02518 1.19685 1.35885 0.97080 0.83844 0.89594 1.25610 1.03073 0.96109 1.02298 1.69849 1.53497 1.05975 1.33009 0.85055 0.76493 0.77980 0.80117 1.18359 1.22385 1.22588 1.23482 0.98948 1.01497 0.95067 1.22887 0.95674 0.88034 0.95377 1.48478 1.51889 1.28956 1.04183 1.18571 0.78742 0.85114 0.82013 1.90724 1.45288 1.26677 1.84028 1.19795 1.06514 0.94826 0.93653 1.21213 0.96497 1.00394 0.91646 1.21132 1.00149 0.93223 0.99177 1.20176 0.96007 0.93716 0.95679 1.21157 0.87746 0.99741 0.94838 1.61980 1.06728 1.06698 1.52559 1.22436 1.01295 0.94997 0.93621 1.22484 1.00436 0.90708 0.99354 1.21255 0.98300 1.01144 0.91456 1.21983 0.96347 0.91484 1.01279 0.90821 0.92068 0.93352 0.79818 0.94173 0.92852 0.88646 0.87795 0.88819 0.86318 0.84106 0.92947 0.88088 0.95065 0.90932 0.90332 0.91936 0.91019 0.94836 0.82783 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.11 71.98 0.66 -4.26 16 2 C 0.13 4.79 3.18 45.34 0.14 4.93 16 3 H 0.04 1.85 7.72 -2.39 -0.02 1.84 16 4 C 0.17 6.47 3.13 46.18 0.14 6.62 16 5 H 0.08 2.80 7.80 -2.38 -0.02 2.78 16 6 N -0.73 -35.94 5.22 -317.33 -1.66 -37.59 16 7 C -0.23 -12.42 9.96 84.03 0.84 -11.58 16 8 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 9 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 10 N -0.97 -59.75 13.06 21.65 0.28 -59.47 16 11 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 12 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 13 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 14 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 15 C -0.15 -4.61 6.78 32.06 0.22 -4.39 16 16 C 0.10 2.43 5.00 86.93 0.43 2.87 16 17 N -0.60 -18.92 3.06 -790.98 -2.42 -21.35 16 18 C 0.56 18.87 7.39 86.79 0.64 19.51 16 19 O -0.59 -24.22 15.87 -3.87 -0.06 -24.28 16 20 C -0.14 -3.73 5.67 -20.09 -0.11 -3.84 16 21 C -0.08 -1.86 9.59 22.52 0.22 -1.64 16 22 C -0.12 -2.05 7.94 22.23 0.18 -1.88 16 23 C -0.06 -0.82 4.89 -19.80 -0.10 -0.92 16 24 C 0.09 0.99 5.11 85.56 0.44 1.43 16 25 N -0.56 -6.77 5.01 -953.45 -4.78 -11.54 16 26 C 0.02 0.20 9.57 127.69 1.22 1.42 16 27 C 0.02 0.22 9.13 127.69 1.17 1.39 16 28 C -0.10 -1.55 9.68 22.24 0.22 -1.34 16 29 C -0.09 -1.76 8.07 22.53 0.18 -1.58 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 2.19 8.14 -2.38 -0.02 2.18 16 32 H 0.05 1.75 7.08 -2.39 -0.02 1.74 16 33 H 0.37 20.39 7.57 -92.71 -0.70 19.69 16 34 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.10 1.82 6.84 -2.39 -0.02 1.80 16 38 H 0.09 1.95 6.81 -2.38 -0.02 1.94 16 39 H 0.12 3.04 7.84 -2.91 -0.02 3.02 16 40 H 0.14 1.86 8.03 -2.91 -0.02 1.84 16 41 H 0.05 0.50 8.06 -2.39 -0.02 0.48 16 42 H 0.10 0.80 8.00 -2.39 -0.02 0.78 16 43 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.07 0.57 8.12 -2.39 -0.02 0.55 16 45 H 0.08 0.51 8.12 -2.39 -0.02 0.49 16 46 H 0.06 0.92 6.16 -2.39 -0.01 0.91 16 47 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 48 H 0.03 0.35 8.14 -2.38 -0.02 0.33 16 49 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 50 H 0.15 2.41 4.59 -2.91 -0.01 2.40 16 Total: -1.00 -71.38 396.72 0.57 -70.82 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.23 Total: 33.30 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 6.95 Total: 2.74 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -8.57 Total: -129.95 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.06 Total: -24.28 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -71.38 0.57 -70.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987192607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.716 kcal (2) G-P(sol) polarization free energy of solvation -71.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds