Wall clock time and date at job start Sat Apr 11 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.69864 * 2 1 4 4 C 1.53183 * 109.59125 * 120.35994 * 2 1 3 5 5 H 1.08999 * 109.50010 * 294.37096 * 4 2 1 6 6 N 1.46494 * 109.49927 * 54.43836 * 4 2 1 7 7 C 1.34777 * 120.00467 * 205.00262 * 6 4 2 8 8 O 1.21635 * 119.99773 * 359.97438 * 7 6 4 9 9 C 1.47263 * 120.00660 * 179.97438 * 7 6 4 10 10 C 1.46744 * 126.92615 * 180.02562 * 9 7 6 11 11 C 1.34066 * 106.30840 * 180.02562 * 10 9 7 12 12 N 1.37081 * 109.04686 * 0.02767 * 11 10 9 13 13 C 1.34584 * 109.94392 * 359.67982 * 12 11 10 14 14 C 1.47034 * 123.95746 * 179.88734 * 12 11 10 15 15 C 1.53138 * 108.83304 * 342.46582 * 14 12 11 16 16 C 1.53121 * 109.59643 * 51.21079 * 15 14 12 17 17 C 1.51091 * 126.72727 * 180.02562 * 11 10 9 18 18 C 1.53046 * 109.31471 * 174.42483 * 4 2 1 19 19 C 1.53045 * 109.53278 * 298.63241 * 18 4 2 20 20 C 1.52760 * 109.38321 * 61.24099 * 19 18 4 21 21 N 1.46923 * 109.00972 * 305.58613 * 20 19 18 22 22 C 1.36935 * 120.63227 * 233.58663 * 21 20 19 23 23 H 1.08000 * 120.00383 * 150.46079 * 22 21 20 24 24 C 1.38817 * 119.99983 * 330.45954 * 22 21 20 25 25 N 1.31626 * 119.99872 * 336.14227 * 24 22 21 26 26 Si 1.86797 * 120.00360 * 156.13765 * 24 22 21 27 27 H 1.48506 * 109.46511 * 60.00416 * 26 24 22 28 28 H 1.48490 * 109.47151 * 300.00571 * 26 24 22 29 29 H 1.48500 * 109.47239 * 179.97438 * 26 24 22 30 30 H 1.08998 * 109.46567 * 180.35273 * 1 2 3 31 31 H 1.09003 * 109.46571 * 300.34728 * 1 2 3 32 32 H 1.08994 * 109.47319 * 60.35173 * 1 2 3 33 33 H 0.97002 * 120.00052 * 25.00209 * 6 4 2 34 34 H 1.07992 * 126.84349 * 359.97409 * 10 9 7 35 35 H 1.07998 * 125.72680 * 180.33477 * 13 12 11 36 36 H 1.08998 * 109.57372 * 102.27044 * 14 12 11 37 37 H 1.08996 * 109.57424 * 222.66177 * 14 12 11 38 38 H 1.09008 * 109.44783 * 171.24483 * 15 14 12 39 39 H 1.08997 * 109.45456 * 291.18840 * 15 14 12 40 40 H 1.09001 * 109.52796 * 49.72693 * 16 15 14 41 41 H 1.09005 * 109.53169 * 169.86405 * 16 15 14 42 42 H 1.08996 * 109.71920 * 283.90250 * 17 11 10 43 43 H 1.09001 * 109.71837 * 44.55443 * 17 11 10 44 44 H 1.08998 * 109.46262 * 58.65156 * 18 4 2 45 45 H 1.08999 * 109.45834 * 178.61846 * 18 4 2 46 46 H 1.08997 * 109.49712 * 181.31719 * 19 18 4 47 47 H 1.08999 * 109.50021 * 301.41080 * 19 18 4 48 48 H 1.09002 * 109.50885 * 185.70100 * 20 19 18 49 49 H 1.09001 * 109.43410 * 65.42323 * 20 19 18 50 50 H 0.97004 * 119.99704 * 354.25846 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7294 1.2452 5 1 1.7662 -0.1670 2.1367 6 7 1.4510 -2.0677 1.3073 7 6 1.3280 -2.6960 2.4933 8 8 1.7096 -2.1520 3.5121 9 6 0.7318 -4.0410 2.5559 10 6 0.5251 -4.8588 3.7566 11 6 -0.0430 -6.0001 3.3417 12 7 -0.2024 -5.9515 1.9810 13 6 0.2541 -4.7776 1.5070 14 6 -0.7934 -7.0367 1.1841 15 6 -0.7767 -8.3243 2.0129 16 6 -1.3998 -8.0592 3.3863 17 6 -0.4539 -7.1706 4.2042 18 6 3.5677 -0.8479 1.1699 19 6 3.9570 -1.6656 -0.0638 20 6 3.4644 -0.9517 -1.3213 21 7 2.0225 -0.6994 -1.1946 22 6 1.1536 -1.1133 -2.1686 23 1 0.1371 -1.3719 -1.9111 24 6 1.5791 -1.2006 -3.4870 25 7 2.6003 -0.4789 -3.8981 26 14 0.7028 -2.3422 -4.6779 27 1 -0.7235 -1.9432 -4.7870 28 1 0.7895 -3.7384 -4.1797 29 1 1.3451 -2.2518 -6.0137 30 1 -0.3632 -1.0277 0.0063 31 1 -0.3632 0.5192 0.8869 32 1 -0.3633 0.5083 -0.8931 33 1 1.1470 -2.5017 0.4948 34 1 0.7804 -4.5944 4.7721 35 1 0.2470 -4.4699 0.4718 36 1 -1.8212 -6.7819 0.9258 37 1 -0.2109 -7.1805 0.2742 38 1 -1.3494 -9.0953 1.4973 39 1 0.2522 -8.6607 2.1403 40 1 -2.3574 -7.5538 3.2605 41 1 -1.5526 -9.0051 3.9059 42 1 0.4283 -7.7413 4.4942 43 1 -0.9676 -6.8086 5.0948 44 1 4.0063 0.1474 1.0991 45 1 3.9380 -1.3449 2.0666 46 1 5.0412 -1.7695 -0.1041 47 1 3.4985 -2.6527 -0.0056 48 1 3.6503 -1.5795 -2.1927 49 1 3.9928 -0.0047 -1.4313 50 1 3.0026 0.1744 -3.3046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994570826.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:23 Heat of formation + Delta-G solvation = 17.221075 kcal Electronic energy + Delta-G solvation = -29773.686626 eV Core-core repulsion = 25994.268800 eV Total energy + Delta-G solvation = -3779.417826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.52476 -39.40372 -37.48276 -35.97769 -34.02455 -32.84107 -32.46316 -31.73066 -29.91434 -28.78179 -27.54355 -26.29012 -24.94774 -24.54365 -22.81220 -21.83784 -21.43174 -20.89989 -19.47228 -18.90065 -18.50591 -17.25818 -16.93744 -16.19031 -15.70015 -15.24661 -14.67548 -14.56524 -14.47332 -14.21916 -14.06544 -13.82613 -13.73117 -13.58467 -13.43268 -13.10589 -12.98897 -12.67253 -12.54272 -12.14110 -11.75067 -11.70421 -11.43402 -11.41936 -11.25836 -11.19632 -11.10067 -10.97896 -10.78964 -10.60904 -10.18237 -10.09796 -9.99837 -9.73958 -9.39833 -9.12281 -8.57310 -8.43178 -8.31644 -8.05837 -6.87932 -6.06207 -3.27095 1.96461 2.48495 2.75733 3.43900 3.44830 3.64326 3.84995 3.98949 4.19176 4.32603 4.38963 4.54133 4.63374 4.93034 4.98593 5.07070 5.13551 5.17699 5.32255 5.33250 5.38434 5.42646 5.51125 5.56015 5.58301 5.63696 5.70410 5.74538 5.81059 5.91304 6.07305 6.11196 6.16578 6.20794 6.33101 6.42026 6.46939 6.59027 6.63426 6.72659 6.86329 6.88505 6.98735 7.09905 7.11037 7.15963 7.24499 7.29568 7.99026 8.24026 8.56355 8.87849 9.10019 9.83185 10.28996 11.20409 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.011754 B = 0.003963 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.509061 B = 7064.257589 C = 8675.379489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.161 3.839 3 H 0.036 0.964 4 C 0.137 3.863 5 H 0.076 0.924 6 N -0.701 5.701 7 C 0.584 3.416 8 O -0.563 6.563 9 C -0.222 4.222 10 C -0.138 4.138 11 C 0.005 3.995 12 N -0.441 5.441 13 C 0.052 3.948 14 C 0.100 3.900 15 C -0.133 4.133 16 C -0.125 4.125 17 C -0.049 4.049 18 C -0.121 4.121 19 C -0.134 4.134 20 C 0.152 3.848 21 N -0.593 5.593 22 C -0.350 4.350 23 H 0.061 0.939 24 C -0.022 4.022 25 N -0.915 5.915 26 Si 1.062 2.938 27 H -0.294 1.294 28 H -0.295 1.295 29 H -0.286 1.286 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.405 0.595 34 H 0.144 0.856 35 H 0.171 0.829 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.048 0.952 47 H 0.056 0.944 48 H 0.077 0.923 49 H 0.015 0.985 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 -14.526 11.835 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 H 0.054 0.946 4 C 0.030 3.970 5 H 0.094 0.906 6 N -0.352 5.352 7 C 0.373 3.627 8 O -0.443 6.443 9 C -0.233 4.233 10 C -0.163 4.163 11 C -0.103 4.103 12 N -0.118 5.118 13 C -0.083 4.083 14 C -0.021 4.021 15 C -0.171 4.171 16 C -0.162 4.162 17 C -0.087 4.087 18 C -0.160 4.160 19 C -0.173 4.173 20 C 0.026 3.974 21 N -0.318 5.318 22 C -0.479 4.479 23 H 0.078 0.922 24 C -0.225 4.225 25 N -0.555 5.555 26 Si 0.892 3.108 27 H -0.221 1.221 28 H -0.223 1.223 29 H -0.212 1.212 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.241 0.759 34 H 0.162 0.838 35 H 0.188 0.812 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.033 0.967 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.608 -14.994 10.751 19.598 hybrid contribution -0.104 0.515 0.991 1.122 sum -6.712 -14.479 11.743 19.813 Atomic orbital electron populations 1.21743 0.95446 1.01483 1.00270 1.20715 0.93567 0.93602 0.86685 0.94635 1.21440 0.92637 0.83436 0.99495 0.90615 1.45818 1.62104 1.18390 1.08877 1.17420 0.77822 0.84058 0.83428 1.90701 1.51538 1.67403 1.34658 1.20493 1.12429 0.96676 0.93677 1.21486 1.04190 0.92695 0.97884 1.20248 1.08355 0.98687 0.83000 1.43861 1.47493 1.13846 1.06590 1.21918 1.00967 0.86138 0.99261 1.22088 0.99441 0.85962 0.94603 1.21839 1.02783 0.96151 0.96331 1.21639 0.98975 1.00255 0.95368 1.20323 0.99370 0.92445 0.96570 1.21772 0.95844 1.00185 0.98186 1.21934 0.98929 0.99723 0.96707 1.20867 0.84250 0.96750 0.95540 1.44213 1.02637 1.65319 1.19661 1.19923 0.95977 1.43730 0.88252 0.92169 1.25793 1.00109 1.00888 0.95673 1.70760 1.25682 1.21032 1.38036 0.83563 0.75048 0.75761 0.76421 1.22086 1.22259 1.21193 0.92743 0.94235 0.91939 0.75902 0.83827 0.81210 0.89921 0.89090 0.89652 0.90711 0.91349 0.90728 0.90309 0.89744 0.92098 0.92781 0.93345 0.92493 0.90488 0.96671 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 7.73 37.16 0.29 -2.21 16 2 C 0.16 3.27 3.20 -67.60 -0.22 3.05 16 3 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.14 2.57 2.32 -67.82 -0.16 2.41 16 5 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16 6 N -0.70 -12.71 3.45 -54.82 -0.19 -12.90 16 7 C 0.58 10.98 7.78 -12.59 -0.10 10.88 16 8 O -0.56 -12.21 16.63 5.25 0.09 -12.12 16 9 C -0.22 -3.62 6.29 -103.32 -0.65 -4.27 16 10 C -0.14 -2.03 10.88 -37.62 -0.41 -2.44 16 11 C 0.00 0.06 6.53 -81.52 -0.53 -0.48 16 12 N -0.44 -5.14 3.11 -111.87 -0.35 -5.49 16 13 C 0.05 0.72 10.90 -16.87 -0.18 0.53 16 14 C 0.10 0.80 6.89 -3.68 -0.03 0.78 16 15 C -0.13 -0.83 5.91 -26.60 -0.16 -0.98 16 16 C -0.12 -0.79 5.96 -26.46 -0.16 -0.95 16 17 C -0.05 -0.40 6.26 -27.48 -0.17 -0.57 16 18 C -0.12 -2.24 5.58 -26.68 -0.15 -2.39 16 19 C -0.13 -2.58 5.91 -26.83 -0.16 -2.74 16 20 C 0.15 3.42 4.66 -3.93 -0.02 3.40 16 21 N -0.59 -13.66 2.49 -165.04 -0.41 -14.07 16 22 C -0.35 -8.83 8.49 -15.06 -0.13 -8.95 16 23 H 0.06 1.50 6.28 -52.49 -0.33 1.17 16 24 C -0.02 -0.58 4.70 -17.43 -0.08 -0.66 16 25 N -0.92 -26.33 12.46 55.49 0.69 -25.64 16 26 Si 1.06 23.86 29.98 -169.99 -5.10 18.76 16 27 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.30 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 30 H 0.05 1.02 6.39 -51.93 -0.33 0.69 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.27 7.62 -51.93 -0.40 0.87 16 33 H 0.40 7.37 6.71 -40.82 -0.27 7.10 16 34 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.17 2.16 7.45 -52.49 -0.39 1.77 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 39 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 40 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 1.13 7.53 -51.93 -0.39 0.74 16 48 H 0.08 1.94 6.40 -51.93 -0.33 1.61 16 49 H 0.02 0.36 7.85 -51.93 -0.41 -0.05 16 50 H 0.27 7.88 6.69 -40.82 -0.27 7.61 16 LS Contribution 383.78 15.07 5.78 5.78 Total: -1.00 -31.49 383.78 -10.72 -42.22 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -8.23 Total: 9.06 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -3.01 Total: -5.60 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.26 Total: -58.10 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.10 Total: 18.76 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.49 -10.72 -42.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994570826.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.436 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds