Wall clock time and date at job start Sat Apr 11 2020 02:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.69864 * 2 1 4 4 C 1.53183 * 109.59125 * 120.35994 * 2 1 3 5 5 H 1.08999 * 109.50010 * 294.37096 * 4 2 1 6 6 N 1.46494 * 109.49927 * 54.43836 * 4 2 1 7 7 C 1.34777 * 120.00467 * 205.00262 * 6 4 2 8 8 O 1.21635 * 119.99773 * 359.97438 * 7 6 4 9 9 C 1.47263 * 120.00660 * 179.97438 * 7 6 4 10 10 C 1.46744 * 126.92615 * 180.02562 * 9 7 6 11 11 C 1.34066 * 106.30840 * 180.02562 * 10 9 7 12 12 N 1.37081 * 109.04686 * 0.02767 * 11 10 9 13 13 C 1.34584 * 109.94392 * 359.67982 * 12 11 10 14 14 C 1.47034 * 123.95746 * 179.88734 * 12 11 10 15 15 C 1.53138 * 108.83304 * 342.46582 * 14 12 11 16 16 C 1.53121 * 109.59643 * 51.21079 * 15 14 12 17 17 C 1.51091 * 126.72727 * 180.02562 * 11 10 9 18 18 C 1.53046 * 109.31471 * 174.42483 * 4 2 1 19 19 C 1.53045 * 109.53278 * 298.63241 * 18 4 2 20 20 C 1.52760 * 109.38321 * 61.24099 * 19 18 4 21 21 N 1.46923 * 109.00972 * 305.58613 * 20 19 18 22 22 C 1.36935 * 120.63227 * 233.58663 * 21 20 19 23 23 H 1.08000 * 120.00383 * 150.46079 * 22 21 20 24 24 C 1.38817 * 119.99983 * 330.45954 * 22 21 20 25 25 N 1.31626 * 119.99872 * 336.14227 * 24 22 21 26 26 Si 1.86797 * 120.00360 * 156.13765 * 24 22 21 27 27 H 1.48506 * 109.46511 * 60.00416 * 26 24 22 28 28 H 1.48490 * 109.47151 * 300.00571 * 26 24 22 29 29 H 1.48500 * 109.47239 * 179.97438 * 26 24 22 30 30 H 1.08998 * 109.46567 * 180.35273 * 1 2 3 31 31 H 1.09003 * 109.46571 * 300.34728 * 1 2 3 32 32 H 1.08994 * 109.47319 * 60.35173 * 1 2 3 33 33 H 0.97002 * 120.00052 * 25.00209 * 6 4 2 34 34 H 1.07992 * 126.84349 * 359.97409 * 10 9 7 35 35 H 1.07998 * 125.72680 * 180.33477 * 13 12 11 36 36 H 1.08998 * 109.57372 * 102.27044 * 14 12 11 37 37 H 1.08996 * 109.57424 * 222.66177 * 14 12 11 38 38 H 1.09008 * 109.44783 * 171.24483 * 15 14 12 39 39 H 1.08997 * 109.45456 * 291.18840 * 15 14 12 40 40 H 1.09001 * 109.52796 * 49.72693 * 16 15 14 41 41 H 1.09005 * 109.53169 * 169.86405 * 16 15 14 42 42 H 1.08996 * 109.71920 * 283.90250 * 17 11 10 43 43 H 1.09001 * 109.71837 * 44.55443 * 17 11 10 44 44 H 1.08998 * 109.46262 * 58.65156 * 18 4 2 45 45 H 1.08999 * 109.45834 * 178.61846 * 18 4 2 46 46 H 1.08997 * 109.49712 * 181.31719 * 19 18 4 47 47 H 1.08999 * 109.50021 * 301.41080 * 19 18 4 48 48 H 1.09002 * 109.50885 * 185.70100 * 20 19 18 49 49 H 1.09001 * 109.43410 * 65.42323 * 20 19 18 50 50 H 0.97004 * 119.99704 * 354.25846 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7294 1.2452 5 1 1.7662 -0.1670 2.1367 6 7 1.4510 -2.0677 1.3073 7 6 1.3280 -2.6960 2.4933 8 8 1.7096 -2.1520 3.5121 9 6 0.7318 -4.0410 2.5559 10 6 0.5251 -4.8588 3.7566 11 6 -0.0430 -6.0001 3.3417 12 7 -0.2024 -5.9515 1.9810 13 6 0.2541 -4.7776 1.5070 14 6 -0.7934 -7.0367 1.1841 15 6 -0.7767 -8.3243 2.0129 16 6 -1.3998 -8.0592 3.3863 17 6 -0.4539 -7.1706 4.2042 18 6 3.5677 -0.8479 1.1699 19 6 3.9570 -1.6656 -0.0638 20 6 3.4644 -0.9517 -1.3213 21 7 2.0225 -0.6994 -1.1946 22 6 1.1536 -1.1133 -2.1686 23 1 0.1371 -1.3719 -1.9111 24 6 1.5791 -1.2006 -3.4870 25 7 2.6003 -0.4789 -3.8981 26 14 0.7028 -2.3422 -4.6779 27 1 -0.7235 -1.9432 -4.7870 28 1 0.7895 -3.7384 -4.1797 29 1 1.3451 -2.2518 -6.0137 30 1 -0.3632 -1.0277 0.0063 31 1 -0.3632 0.5192 0.8869 32 1 -0.3633 0.5083 -0.8931 33 1 1.1470 -2.5017 0.4948 34 1 0.7804 -4.5944 4.7721 35 1 0.2470 -4.4699 0.4718 36 1 -1.8212 -6.7819 0.9258 37 1 -0.2109 -7.1805 0.2742 38 1 -1.3494 -9.0953 1.4973 39 1 0.2522 -8.6607 2.1403 40 1 -2.3574 -7.5538 3.2605 41 1 -1.5526 -9.0051 3.9059 42 1 0.4283 -7.7413 4.4942 43 1 -0.9676 -6.8086 5.0948 44 1 4.0063 0.1474 1.0991 45 1 3.9380 -1.3449 2.0666 46 1 5.0412 -1.7695 -0.1041 47 1 3.4985 -2.6527 -0.0056 48 1 3.6503 -1.5795 -2.1927 49 1 3.9928 -0.0047 -1.4313 50 1 3.0026 0.1744 -3.3046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994570826.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:22 Heat of formation + Delta-G solvation = 0.758217 kcal Electronic energy + Delta-G solvation = -29774.400509 eV Core-core repulsion = 25994.268800 eV Total energy + Delta-G solvation = -3780.131709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.49429 -40.93798 -39.07962 -36.69564 -35.78529 -34.11607 -33.63832 -33.43294 -31.38028 -30.07326 -28.39404 -27.90899 -26.76582 -25.44334 -24.09126 -23.21024 -22.56833 -22.39671 -20.81410 -20.33768 -19.56649 -18.87585 -18.22330 -17.30329 -16.83429 -16.57139 -16.17899 -16.15919 -15.76321 -15.40382 -15.18666 -15.10111 -14.89042 -14.74442 -14.62537 -14.44908 -14.31884 -14.21430 -13.58333 -13.40734 -13.22497 -13.15418 -12.79780 -12.73011 -12.49825 -12.43735 -12.26221 -11.93978 -11.91632 -11.83620 -11.77745 -11.70566 -11.69192 -11.49970 -10.95648 -10.90959 -10.39910 -9.97390 -9.49004 -9.11487 -8.84039 -8.11557 -5.31264 0.77984 1.45094 1.62781 1.69484 1.87024 1.88695 2.43052 2.63161 2.71398 3.30871 3.48231 3.60687 3.74282 3.81658 3.87353 3.95479 4.00275 4.09025 4.10160 4.21884 4.27680 4.39762 4.47260 4.49718 4.52246 4.57563 4.58686 4.66986 4.84748 4.86237 4.86915 4.90065 4.91744 4.99229 5.03878 5.06980 5.10919 5.12978 5.19519 5.24528 5.30783 5.32866 5.37608 5.43284 5.68119 5.80680 5.99226 6.09254 6.34283 6.49058 6.77714 7.12254 7.42045 7.86717 8.32539 9.12546 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.011754 B = 0.003963 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.509061 B = 7064.257589 C = 8675.379489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.160 3.840 3 H 0.030 0.970 4 C 0.144 3.856 5 H 0.075 0.925 6 N -0.696 5.696 7 C 0.584 3.416 8 O -0.599 6.599 9 C -0.258 4.258 10 C -0.173 4.173 11 C 0.021 3.979 12 N -0.435 5.435 13 C 0.058 3.942 14 C 0.089 3.911 15 C -0.130 4.130 16 C -0.121 4.121 17 C -0.051 4.051 18 C -0.115 4.115 19 C -0.120 4.120 20 C 0.161 3.839 21 N -0.603 5.603 22 C -0.338 4.338 23 H 0.067 0.933 24 C -0.076 4.076 25 N -0.950 5.950 26 Si 1.109 2.891 27 H -0.278 1.278 28 H -0.275 1.275 29 H -0.302 1.302 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.405 0.595 34 H 0.137 0.863 35 H 0.180 0.820 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.065 0.935 47 H 0.052 0.948 48 H 0.047 0.953 49 H 0.001 0.999 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.505 -17.367 12.405 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.053 3.947 3 H 0.048 0.952 4 C 0.037 3.963 5 H 0.093 0.907 6 N -0.345 5.345 7 C 0.375 3.625 8 O -0.483 6.483 9 C -0.269 4.269 10 C -0.196 4.196 11 C -0.088 4.088 12 N -0.111 5.111 13 C -0.079 4.079 14 C -0.031 4.031 15 C -0.167 4.167 16 C -0.159 4.159 17 C -0.089 4.089 18 C -0.154 4.154 19 C -0.159 4.159 20 C 0.035 3.965 21 N -0.328 5.328 22 C -0.468 4.468 23 H 0.085 0.915 24 C -0.272 4.272 25 N -0.592 5.592 26 Si 0.935 3.065 27 H -0.204 1.204 28 H -0.201 1.201 29 H -0.229 1.229 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.242 0.758 34 H 0.155 0.845 35 H 0.197 0.803 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.130 0.870 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.019 0.981 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.409 -17.863 11.345 22.771 hybrid contribution 0.414 1.388 0.871 1.690 sum -7.996 -16.475 12.216 22.013 Atomic orbital electron populations 1.21651 0.94269 1.01619 1.00524 1.20813 0.94540 0.93193 0.86110 0.95207 1.21270 0.92841 0.83800 0.98389 0.90723 1.45729 1.61970 1.17978 1.08847 1.17792 0.77164 0.84816 0.82766 1.90666 1.53345 1.68538 1.35709 1.20425 1.14781 0.96224 0.95437 1.21587 1.06503 0.94074 0.97480 1.20757 1.05856 0.98684 0.83504 1.44190 1.46180 1.13839 1.06884 1.21980 1.00194 0.86664 0.99055 1.22490 1.00056 0.85614 0.94900 1.21877 1.03066 0.95583 0.96198 1.21654 0.98130 1.00798 0.95311 1.20512 1.00476 0.91419 0.96507 1.21719 0.95657 1.00477 0.97540 1.21771 0.99864 0.98989 0.95268 1.20685 0.84181 0.95784 0.95869 1.44378 1.02636 1.65814 1.19965 1.20183 0.96370 1.41754 0.88473 0.91542 1.27036 1.00471 1.01907 0.97793 1.70888 1.27763 1.22544 1.38051 0.82924 0.74632 0.75155 0.73795 1.20429 1.20083 1.22928 0.92631 0.92070 0.93518 0.75844 0.84521 0.80329 0.88530 0.88138 0.87024 0.91120 0.91515 0.88424 0.89228 0.88870 0.91276 0.92793 0.91619 0.92934 0.93425 0.98060 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 7.73 71.98 0.56 -4.00 16 2 C 0.16 6.44 3.20 44.97 0.14 6.58 16 3 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 4 C 0.14 5.36 2.32 45.07 0.10 5.47 16 5 H 0.07 2.85 7.58 -2.39 -0.02 2.83 16 6 N -0.70 -25.05 3.45 -445.59 -1.54 -26.59 16 7 C 0.58 22.13 7.78 86.62 0.67 22.81 16 8 O -0.60 -26.49 16.63 -4.14 -0.07 -26.56 16 9 C -0.26 -8.41 6.29 -19.02 -0.12 -8.53 16 10 C -0.17 -5.07 10.88 23.54 0.26 -4.81 16 11 C 0.02 0.46 6.53 40.91 0.27 0.73 16 12 N -0.44 -9.24 3.11 -507.85 -1.58 -10.82 16 13 C 0.06 1.53 10.90 83.93 0.91 2.45 16 14 C 0.09 1.13 6.89 86.32 0.59 1.73 16 15 C -0.13 -1.09 5.91 30.68 0.18 -0.91 16 16 C -0.12 -1.07 5.96 30.77 0.18 -0.88 16 17 C -0.05 -0.70 6.26 30.11 0.19 -0.51 16 18 C -0.12 -4.21 5.58 30.62 0.17 -4.04 16 19 C -0.12 -4.59 5.91 30.53 0.18 -4.41 16 20 C 0.16 7.37 4.66 86.22 0.40 7.77 16 21 N -0.60 -27.91 2.49 -676.05 -1.69 -29.60 16 22 C -0.34 -17.01 8.49 84.03 0.71 -16.30 16 23 H 0.07 3.24 6.28 -2.91 -0.02 3.22 16 24 C -0.08 -4.04 4.70 84.86 0.40 -3.64 16 25 N -0.95 -55.96 12.46 21.65 0.27 -55.69 16 26 Si 1.11 47.81 29.98 68.60 2.06 49.87 16 27 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 29 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 30 H 0.05 2.03 6.39 -2.39 -0.02 2.01 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.86 7.62 -2.39 -0.02 1.84 16 33 H 0.41 14.54 6.71 -92.71 -0.62 13.92 16 34 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.18 4.30 7.45 -2.91 -0.02 4.27 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 39 H 0.07 0.69 8.11 -2.39 -0.02 0.67 16 40 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 41 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.05 2.06 7.53 -2.39 -0.02 2.04 16 48 H 0.05 2.47 6.40 -2.39 -0.02 2.45 16 49 H 0.00 0.07 7.85 -2.39 -0.02 0.05 16 50 H 0.25 15.33 6.69 -92.71 -0.62 14.71 16 Total: -1.00 -69.70 383.78 3.73 -65.97 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.46 Total: 33.93 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.81 Total: -0.52 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -4.53 Total: -122.69 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.07 Total: -26.56 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.06 Total: 49.87 kcal Total: -69.70 3.73 -65.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994570826.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.730 kcal (2) G-P(sol) polarization free energy of solvation -69.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds