Wall clock time and date at job start Sat Apr 11 2020 02:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.59117 * 2 1 4 4 C 1.53202 * 109.58675 * 239.71707 * 2 1 3 5 5 H 1.09005 * 109.49391 * 65.45205 * 4 2 1 6 6 N 1.46492 * 109.49663 * 305.38919 * 4 2 1 7 7 C 1.34775 * 120.00136 * 155.33793 * 6 4 2 8 8 O 1.21629 * 120.00190 * 359.72482 * 7 6 4 9 9 C 1.47266 * 120.00041 * 179.72538 * 7 6 4 10 10 C 1.46738 * 126.92577 * 359.68003 * 9 7 6 11 11 C 1.34068 * 106.31444 * 179.87111 * 10 9 7 12 12 N 1.37081 * 109.03744 * 0.43889 * 11 10 9 13 13 C 1.34573 * 109.95346 * 359.66959 * 12 11 10 14 14 C 1.47032 * 123.95425 * 179.61392 * 12 11 10 15 15 C 1.53141 * 108.83446 * 342.45131 * 14 12 11 16 16 C 1.53134 * 109.58900 * 51.22662 * 15 14 12 17 17 C 1.51091 * 126.73484 * 180.20771 * 11 10 9 18 18 C 1.53039 * 109.33859 * 185.41910 * 4 2 1 19 19 C 1.53099 * 109.50458 * 61.35149 * 18 4 2 20 20 C 1.53199 * 109.32910 * 298.65421 * 19 18 4 21 21 N 1.46921 * 109.70518 * 120.36074 * 2 1 3 22 22 C 1.36937 * 120.63337 * 353.43694 * 21 2 1 23 23 H 1.08004 * 119.99277 * 28.65142 * 22 21 2 24 24 C 1.38806 * 120.00378 * 208.64718 * 22 21 2 25 25 N 1.31619 * 120.00149 * 14.73710 * 24 22 21 26 26 Si 1.86797 * 120.00049 * 194.72841 * 24 22 21 27 27 H 1.48502 * 109.47319 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47212 * 120.00360 * 26 24 22 29 29 H 1.48498 * 109.47492 * 240.00411 * 26 24 22 30 30 H 1.08999 * 109.46805 * 180.27937 * 1 2 3 31 31 H 1.09003 * 109.46572 * 300.28192 * 1 2 3 32 32 H 1.08999 * 109.46963 * 60.28160 * 1 2 3 33 33 H 0.97005 * 120.00613 * 335.06459 * 6 4 2 34 34 H 1.08001 * 126.84472 * 0.03753 * 10 9 7 35 35 H 1.07998 * 125.72965 * 180.08417 * 13 12 11 36 36 H 1.09005 * 109.57483 * 102.25307 * 14 12 11 37 37 H 1.08994 * 109.58100 * 222.50996 * 14 12 11 38 38 H 1.09003 * 109.45630 * 171.26502 * 15 14 12 39 39 H 1.08998 * 109.44945 * 291.19111 * 15 14 12 40 40 H 1.08994 * 109.52272 * 49.72945 * 16 15 14 41 41 H 1.08995 * 109.52465 * 169.93026 * 16 15 14 42 42 H 1.09000 * 109.71461 * 44.89657 * 17 11 10 43 43 H 1.09004 * 109.75338 * 284.26969 * 17 11 10 44 44 H 1.08998 * 109.45718 * 181.40250 * 18 4 2 45 45 H 1.09001 * 109.45771 * 301.35599 * 18 4 2 46 46 H 1.08997 * 109.49041 * 178.69723 * 19 18 4 47 47 H 1.09002 * 109.51665 * 58.62660 * 19 18 4 48 48 H 1.09000 * 109.58392 * 294.84562 * 20 19 18 49 49 H 1.08999 * 109.70290 * 174.49221 * 20 19 18 50 50 H 0.96998 * 120.00397 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2464 5 1 1.7633 -0.1657 -2.1373 6 7 1.4540 -2.0675 -1.3080 7 6 1.3371 -2.6985 -2.4932 8 8 1.7165 -2.1536 -3.5123 9 6 0.7500 -4.0476 -2.5543 10 6 0.2520 -4.8442 -1.4271 11 6 -0.1920 -5.9972 -1.9478 12 7 0.0016 -5.9789 -3.3047 13 6 0.5646 -4.8132 -3.6726 14 6 -0.3616 -7.0863 -4.2011 15 6 -0.5518 -8.3560 -3.3663 16 6 -1.5067 -8.0682 -2.2042 17 6 -0.8061 -7.1527 -1.1924 18 6 3.5679 -0.8434 -1.1738 19 6 3.9604 -1.6609 0.0597 20 6 3.4686 -0.9436 1.3209 21 7 2.0254 -0.6991 1.1935 22 6 1.1587 -1.1144 2.1689 23 1 0.1393 -1.3648 1.9145 24 6 1.5901 -1.2136 3.4845 25 7 2.7190 -0.6451 3.8515 26 14 0.5684 -2.1538 4.7341 27 1 -0.6466 -2.6948 4.0737 28 1 1.3710 -3.2742 5.2873 29 1 0.1690 -1.2405 5.8347 30 1 -0.3633 -1.0277 0.0050 31 1 -0.3632 0.5182 0.8875 32 1 -0.3633 0.5094 -0.8925 33 1 1.1514 -2.5021 -0.4953 34 1 0.2422 -4.5577 -0.3858 35 1 0.8258 -4.5297 -4.6814 36 1 -1.2905 -6.8473 -4.7191 37 1 0.4335 -7.2419 -4.9302 38 1 -0.9701 -9.1435 -3.9932 39 1 0.4118 -8.6794 -2.9727 40 1 -2.4023 -7.5753 -2.5822 41 1 -1.7822 -9.0043 -1.7187 42 1 -1.5326 -6.7765 -0.4721 43 1 -0.0262 -7.7086 -0.6719 44 1 3.9376 -1.3388 -2.0715 45 1 4.0046 0.1529 -1.1031 46 1 5.0449 -1.7626 0.0986 47 1 3.5041 -2.6491 0.0019 48 1 3.9921 0.0063 1.4287 49 1 3.6579 -1.5664 2.1953 50 1 3.0204 -0.7141 4.7709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994570838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:30 Heat of formation + Delta-G solvation = 20.048672 kcal Electronic energy + Delta-G solvation = -29713.617124 eV Core-core repulsion = 25934.321912 eV Total energy + Delta-G solvation = -3779.295212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.50066 -39.28750 -37.34451 -35.93144 -33.76932 -32.89951 -32.23256 -31.56075 -29.87307 -28.89193 -27.52715 -26.19538 -24.97060 -24.56589 -22.83364 -21.70256 -21.53792 -20.64276 -19.52045 -18.67689 -18.36573 -17.30699 -16.33797 -16.03122 -15.77503 -15.20787 -14.74109 -14.56750 -14.46079 -14.16647 -13.95263 -13.79041 -13.68585 -13.47239 -13.18100 -12.91315 -12.89662 -12.66034 -12.46453 -12.07179 -11.76829 -11.68925 -11.41972 -11.24354 -11.17956 -11.13044 -11.09002 -10.93018 -10.63861 -10.52045 -10.41653 -10.03080 -9.91889 -9.55464 -9.34206 -9.20957 -8.54880 -8.45480 -8.25460 -7.99741 -6.61739 -5.75674 -3.20259 2.00995 2.51168 2.73404 3.36871 3.44904 3.46228 3.99698 4.04489 4.19196 4.31473 4.40898 4.49425 4.63129 4.89109 4.98169 5.09652 5.14504 5.32432 5.38031 5.40099 5.41970 5.51181 5.53809 5.61154 5.70906 5.73623 5.76670 5.84651 5.87792 6.01615 6.08357 6.22727 6.29472 6.33290 6.47241 6.54437 6.64130 6.78594 6.82434 6.89391 6.90922 7.03419 7.08160 7.12322 7.28114 7.32517 7.47895 7.75227 7.83496 8.33831 8.47687 8.94604 9.23924 9.87253 10.44325 11.32051 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.011686 B = 0.003928 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.387127 B = 7126.408308 C = 8727.714953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.160 3.840 3 H 0.038 0.962 4 C 0.136 3.864 5 H 0.074 0.926 6 N -0.695 5.695 7 C 0.585 3.415 8 O -0.572 6.572 9 C -0.223 4.223 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.446 5.446 13 C 0.069 3.931 14 C 0.103 3.897 15 C -0.134 4.134 16 C -0.124 4.124 17 C -0.052 4.052 18 C -0.121 4.121 19 C -0.140 4.140 20 C 0.171 3.829 21 N -0.586 5.586 22 C -0.250 4.250 23 H 0.071 0.929 24 C 0.004 3.996 25 N -0.902 5.902 26 Si 0.899 3.101 27 H -0.277 1.277 28 H -0.290 1.290 29 H -0.292 1.292 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.408 0.592 34 H 0.148 0.852 35 H 0.170 0.830 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.045 0.955 47 H 0.054 0.946 48 H 0.016 0.984 49 H 0.089 0.911 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 -14.272 -13.565 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.053 3.947 3 H 0.055 0.945 4 C 0.029 3.971 5 H 0.092 0.908 6 N -0.345 5.345 7 C 0.374 3.626 8 O -0.454 6.454 9 C -0.233 4.233 10 C -0.182 4.182 11 C -0.097 4.097 12 N -0.124 5.124 13 C -0.066 4.066 14 C -0.018 4.018 15 C -0.171 4.171 16 C -0.162 4.162 17 C -0.090 4.090 18 C -0.159 4.159 19 C -0.179 4.179 20 C 0.045 3.955 21 N -0.310 5.310 22 C -0.380 4.380 23 H 0.089 0.911 24 C -0.195 4.195 25 N -0.546 5.546 26 Si 0.729 3.271 27 H -0.202 1.202 28 H -0.217 1.217 29 H -0.219 1.219 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.245 0.755 34 H 0.165 0.835 35 H 0.188 0.812 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.034 0.966 49 H 0.107 0.893 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.161 -14.140 -14.287 21.024 hybrid contribution -0.435 -0.581 1.072 1.295 sum -6.596 -14.721 -13.215 20.853 Atomic orbital electron populations 1.21779 0.95696 1.01559 1.00276 1.20715 0.93301 0.93854 0.86871 0.94472 1.21478 0.92799 0.83318 0.99500 0.90796 1.45767 1.61614 1.18048 1.09052 1.17376 0.77687 0.84052 0.83525 1.90700 1.52177 1.67827 1.34702 1.20436 1.12858 0.96606 0.93428 1.21782 1.04456 0.93530 0.98464 1.20239 1.08110 0.98608 0.82707 1.43869 1.47957 1.13771 1.06775 1.21581 1.00152 0.85440 0.99401 1.22028 1.01722 0.85635 0.92392 1.21842 1.01359 0.96160 0.97765 1.21632 0.98322 1.00182 0.96076 1.20354 0.99494 0.92557 0.96593 1.21779 0.95709 1.00224 0.98218 1.22144 0.98750 0.99707 0.97295 1.20827 0.83051 0.97168 0.94441 1.44168 1.03117 1.64916 1.18793 1.19225 0.94686 1.37705 0.86379 0.91113 1.25067 0.97697 0.99822 0.96912 1.70024 1.22878 1.44912 1.16809 0.86282 0.79672 0.79506 0.81656 1.20250 1.21717 1.21881 0.92655 0.91949 0.94227 0.75544 0.83471 0.81246 0.90153 0.89437 0.89761 0.90688 0.91392 0.90694 0.89501 0.90152 0.93160 0.92149 0.93661 0.92751 0.96591 0.89304 0.93790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.72 37.16 0.29 -2.28 16 2 C 0.16 3.29 3.19 -67.60 -0.22 3.07 16 3 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 4 C 0.14 2.59 2.32 -67.81 -0.16 2.44 16 5 H 0.07 1.43 7.58 -51.93 -0.39 1.04 16 6 N -0.70 -12.88 3.47 -54.81 -0.19 -13.07 16 7 C 0.59 10.97 7.77 -12.59 -0.10 10.87 16 8 O -0.57 -12.11 16.58 5.25 0.09 -12.03 16 9 C -0.22 -3.61 6.29 -103.32 -0.65 -4.26 16 10 C -0.16 -2.32 10.47 -37.62 -0.39 -2.72 16 11 C 0.01 0.13 6.53 -81.52 -0.53 -0.40 16 12 N -0.45 -5.06 3.11 -111.87 -0.35 -5.40 16 13 C 0.07 0.94 11.18 -16.87 -0.19 0.75 16 14 C 0.10 0.74 6.89 -3.68 -0.03 0.72 16 15 C -0.13 -0.79 5.91 -26.59 -0.16 -0.94 16 16 C -0.12 -0.82 5.96 -26.46 -0.16 -0.98 16 17 C -0.05 -0.47 6.26 -27.49 -0.17 -0.64 16 18 C -0.12 -2.29 5.58 -26.66 -0.15 -2.44 16 19 C -0.14 -2.80 5.93 -26.58 -0.16 -2.96 16 20 C 0.17 4.01 5.29 -3.71 -0.02 3.99 16 21 N -0.59 -13.83 2.65 -164.77 -0.44 -14.27 16 22 C -0.25 -6.38 8.63 -15.06 -0.13 -6.51 16 23 H 0.07 1.75 6.20 -52.48 -0.33 1.43 16 24 C 0.00 0.10 4.97 -17.43 -0.09 0.01 16 25 N -0.90 -25.44 11.09 55.49 0.62 -24.83 16 26 Si 0.90 20.97 29.58 -169.99 -5.03 15.94 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H 0.05 1.05 6.40 -51.93 -0.33 0.72 16 31 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.41 7.73 6.90 -40.82 -0.28 7.45 16 34 H 0.15 2.15 7.70 -52.49 -0.40 1.74 16 35 H 0.17 2.06 8.06 -52.49 -0.42 1.63 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 40 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.05 1.12 7.53 -51.93 -0.39 0.73 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 2.34 6.01 -51.93 -0.31 2.02 16 50 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -31.06 384.97 -10.81 -41.87 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -8.31 Total: 8.27 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -3.00 Total: -2.28 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.36 Total: -57.58 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.06 -10.81 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994570838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.920 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds