Wall clock time and date at job start Sat Apr 11 2020 02:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.59117 * 2 1 4 4 C 1.53202 * 109.58675 * 239.71707 * 2 1 3 5 5 H 1.09005 * 109.49391 * 65.45205 * 4 2 1 6 6 N 1.46492 * 109.49663 * 305.38919 * 4 2 1 7 7 C 1.34775 * 120.00136 * 155.33793 * 6 4 2 8 8 O 1.21629 * 120.00190 * 359.72482 * 7 6 4 9 9 C 1.47266 * 120.00041 * 179.72538 * 7 6 4 10 10 C 1.46738 * 126.92577 * 359.68003 * 9 7 6 11 11 C 1.34068 * 106.31444 * 179.87111 * 10 9 7 12 12 N 1.37081 * 109.03744 * 0.43889 * 11 10 9 13 13 C 1.34573 * 109.95346 * 359.66959 * 12 11 10 14 14 C 1.47032 * 123.95425 * 179.61392 * 12 11 10 15 15 C 1.53141 * 108.83446 * 342.45131 * 14 12 11 16 16 C 1.53134 * 109.58900 * 51.22662 * 15 14 12 17 17 C 1.51091 * 126.73484 * 180.20771 * 11 10 9 18 18 C 1.53039 * 109.33859 * 185.41910 * 4 2 1 19 19 C 1.53099 * 109.50458 * 61.35149 * 18 4 2 20 20 C 1.53199 * 109.32910 * 298.65421 * 19 18 4 21 21 N 1.46921 * 109.70518 * 120.36074 * 2 1 3 22 22 C 1.36937 * 120.63337 * 353.43694 * 21 2 1 23 23 H 1.08004 * 119.99277 * 28.65142 * 22 21 2 24 24 C 1.38806 * 120.00378 * 208.64718 * 22 21 2 25 25 N 1.31619 * 120.00149 * 14.73710 * 24 22 21 26 26 Si 1.86797 * 120.00049 * 194.72841 * 24 22 21 27 27 H 1.48502 * 109.47319 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47212 * 120.00360 * 26 24 22 29 29 H 1.48498 * 109.47492 * 240.00411 * 26 24 22 30 30 H 1.08999 * 109.46805 * 180.27937 * 1 2 3 31 31 H 1.09003 * 109.46572 * 300.28192 * 1 2 3 32 32 H 1.08999 * 109.46963 * 60.28160 * 1 2 3 33 33 H 0.97005 * 120.00613 * 335.06459 * 6 4 2 34 34 H 1.08001 * 126.84472 * 0.03753 * 10 9 7 35 35 H 1.07998 * 125.72965 * 180.08417 * 13 12 11 36 36 H 1.09005 * 109.57483 * 102.25307 * 14 12 11 37 37 H 1.08994 * 109.58100 * 222.50996 * 14 12 11 38 38 H 1.09003 * 109.45630 * 171.26502 * 15 14 12 39 39 H 1.08998 * 109.44945 * 291.19111 * 15 14 12 40 40 H 1.08994 * 109.52272 * 49.72945 * 16 15 14 41 41 H 1.08995 * 109.52465 * 169.93026 * 16 15 14 42 42 H 1.09000 * 109.71461 * 44.89657 * 17 11 10 43 43 H 1.09004 * 109.75338 * 284.26969 * 17 11 10 44 44 H 1.08998 * 109.45718 * 181.40250 * 18 4 2 45 45 H 1.09001 * 109.45771 * 301.35599 * 18 4 2 46 46 H 1.08997 * 109.49041 * 178.69723 * 19 18 4 47 47 H 1.09002 * 109.51665 * 58.62660 * 19 18 4 48 48 H 1.09000 * 109.58392 * 294.84562 * 20 19 18 49 49 H 1.08999 * 109.70290 * 174.49221 * 20 19 18 50 50 H 0.96998 * 120.00397 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2464 5 1 1.7633 -0.1657 -2.1373 6 7 1.4540 -2.0675 -1.3080 7 6 1.3371 -2.6985 -2.4932 8 8 1.7165 -2.1536 -3.5123 9 6 0.7500 -4.0476 -2.5543 10 6 0.2520 -4.8442 -1.4271 11 6 -0.1920 -5.9972 -1.9478 12 7 0.0016 -5.9789 -3.3047 13 6 0.5646 -4.8132 -3.6726 14 6 -0.3616 -7.0863 -4.2011 15 6 -0.5518 -8.3560 -3.3663 16 6 -1.5067 -8.0682 -2.2042 17 6 -0.8061 -7.1527 -1.1924 18 6 3.5679 -0.8434 -1.1738 19 6 3.9604 -1.6609 0.0597 20 6 3.4686 -0.9436 1.3209 21 7 2.0254 -0.6991 1.1935 22 6 1.1587 -1.1144 2.1689 23 1 0.1393 -1.3648 1.9145 24 6 1.5901 -1.2136 3.4845 25 7 2.7190 -0.6451 3.8515 26 14 0.5684 -2.1538 4.7341 27 1 -0.6466 -2.6948 4.0737 28 1 1.3710 -3.2742 5.2873 29 1 0.1690 -1.2405 5.8347 30 1 -0.3633 -1.0277 0.0050 31 1 -0.3632 0.5182 0.8875 32 1 -0.3633 0.5094 -0.8925 33 1 1.1514 -2.5021 -0.4953 34 1 0.2422 -4.5577 -0.3858 35 1 0.8258 -4.5297 -4.6814 36 1 -1.2905 -6.8473 -4.7191 37 1 0.4335 -7.2419 -4.9302 38 1 -0.9701 -9.1435 -3.9932 39 1 0.4118 -8.6794 -2.9727 40 1 -2.4023 -7.5753 -2.5822 41 1 -1.7822 -9.0043 -1.7187 42 1 -1.5326 -6.7765 -0.4721 43 1 -0.0262 -7.7086 -0.6719 44 1 3.9376 -1.3388 -2.0715 45 1 4.0046 0.1529 -1.1031 46 1 5.0449 -1.7626 0.0986 47 1 3.5041 -2.6491 0.0019 48 1 3.9921 0.0063 1.4287 49 1 3.6579 -1.5664 2.1953 50 1 3.0204 -0.7141 4.7709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994570838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:29 Heat of formation + Delta-G solvation = 3.976181 kcal Electronic energy + Delta-G solvation = -29714.314080 eV Core-core repulsion = 25934.321912 eV Total energy + Delta-G solvation = -3779.992168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.45524 -40.81890 -38.93896 -36.65245 -35.52970 -34.03246 -33.65901 -33.26001 -31.34330 -30.16057 -28.36366 -27.85515 -26.83092 -25.42060 -24.15797 -23.15597 -22.41135 -22.32394 -20.83383 -20.17181 -19.38945 -18.35502 -18.21426 -17.18607 -16.96151 -16.59860 -16.32553 -16.01094 -15.64668 -15.29521 -15.12588 -14.97384 -14.74973 -14.59103 -14.56733 -14.40341 -14.30076 -14.16882 -13.55858 -13.52306 -13.12162 -12.93801 -12.87391 -12.71265 -12.42312 -12.40836 -12.28436 -12.15565 -11.93444 -11.87702 -11.77376 -11.70285 -11.65672 -11.33544 -11.01595 -10.81715 -10.47804 -9.88813 -9.44997 -9.06860 -8.58851 -7.78274 -5.24607 0.84618 1.46901 1.49915 1.52821 1.61644 1.87502 2.55161 2.61737 2.68948 3.37620 3.61610 3.62237 3.76437 3.83245 3.89020 4.01750 4.11053 4.15473 4.23837 4.31752 4.40852 4.42185 4.49936 4.52711 4.59089 4.60493 4.68564 4.80768 4.87718 4.90992 4.94587 4.96535 5.00964 5.06079 5.07516 5.14553 5.15507 5.24555 5.27898 5.33061 5.36668 5.47017 5.59161 5.73606 5.77489 5.82418 5.85563 6.12796 6.38307 6.47281 6.85621 7.22346 7.48070 7.92353 8.45702 9.28357 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.011686 B = 0.003928 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.387127 B = 7126.408308 C = 8727.714953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.032 0.968 4 C 0.143 3.857 5 H 0.076 0.924 6 N -0.693 5.693 7 C 0.585 3.415 8 O -0.602 6.602 9 C -0.260 4.260 10 C -0.187 4.187 11 C 0.020 3.980 12 N -0.438 5.438 13 C 0.076 3.924 14 C 0.092 3.908 15 C -0.130 4.130 16 C -0.121 4.121 17 C -0.056 4.056 18 C -0.114 4.114 19 C -0.125 4.125 20 C 0.179 3.821 21 N -0.596 5.596 22 C -0.244 4.244 23 H 0.079 0.921 24 C -0.050 4.050 25 N -0.937 5.937 26 Si 0.959 3.041 27 H -0.262 1.262 28 H -0.295 1.295 29 H -0.299 1.299 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.406 0.594 34 H 0.138 0.862 35 H 0.184 0.816 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.048 0.952 48 H -0.005 1.005 49 H 0.059 0.941 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 -16.758 -15.334 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.050 0.950 4 C 0.036 3.964 5 H 0.094 0.906 6 N -0.342 5.342 7 C 0.375 3.625 8 O -0.486 6.486 9 C -0.271 4.271 10 C -0.210 4.210 11 C -0.088 4.088 12 N -0.114 5.114 13 C -0.061 4.061 14 C -0.027 4.027 15 C -0.167 4.167 16 C -0.159 4.159 17 C -0.093 4.093 18 C -0.153 4.153 19 C -0.164 4.164 20 C 0.054 3.946 21 N -0.320 5.320 22 C -0.374 4.374 23 H 0.096 0.904 24 C -0.245 4.245 25 N -0.584 5.584 26 Si 0.788 3.212 27 H -0.186 1.186 28 H -0.222 1.222 29 H -0.227 1.227 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.242 0.758 34 H 0.156 0.844 35 H 0.201 0.799 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.013 0.987 49 H 0.077 0.923 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.798 -16.655 -16.084 24.432 hybrid contribution 0.039 0.161 1.541 1.550 sum -7.759 -16.494 -14.543 23.319 Atomic orbital electron populations 1.21686 0.94337 1.01574 1.00803 1.20828 0.94438 0.93405 0.86186 0.95016 1.21309 0.92847 0.83704 0.98509 0.90558 1.45715 1.61660 1.17719 1.09108 1.17739 0.77071 0.84849 0.82830 1.90666 1.53713 1.68818 1.35422 1.20366 1.15346 0.96162 0.95180 1.21785 1.06438 0.94827 0.97982 1.20674 1.06312 0.98533 0.83304 1.44197 1.46209 1.13912 1.07068 1.21769 0.99232 0.85828 0.99279 1.22466 1.03149 0.84733 0.92339 1.21876 1.01088 0.96069 0.97699 1.21644 0.98079 1.00373 0.95791 1.20506 0.99797 0.91928 0.97095 1.21724 0.95694 1.00419 0.97467 1.21950 0.99557 0.98933 0.95977 1.20598 0.83250 0.95830 0.94942 1.44333 1.02961 1.65413 1.19298 1.19529 0.95058 1.36191 0.86656 0.90389 1.25746 0.98866 1.01189 0.98715 1.70180 1.24668 1.46843 1.16682 0.85322 0.78738 0.77877 0.79238 1.18627 1.22222 1.22689 0.92822 0.93196 0.91886 0.75832 0.84446 0.79940 0.88473 0.87705 0.86855 0.91255 0.91428 0.88746 0.89327 0.89578 0.92943 0.91369 0.92080 0.93359 0.98665 0.92282 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 7.72 71.98 0.56 -4.17 16 2 C 0.16 6.50 3.19 44.98 0.14 6.65 16 3 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 4 C 0.14 5.44 2.32 45.07 0.10 5.54 16 5 H 0.08 2.91 7.58 -2.38 -0.02 2.89 16 6 N -0.69 -25.80 3.47 -445.58 -1.54 -27.34 16 7 C 0.58 21.97 7.77 86.62 0.67 22.65 16 8 O -0.60 -25.44 16.58 -4.12 -0.07 -25.51 16 9 C -0.26 -8.38 6.29 -19.02 -0.12 -8.50 16 10 C -0.19 -5.47 10.47 23.54 0.25 -5.22 16 11 C 0.02 0.47 6.53 40.91 0.27 0.74 16 12 N -0.44 -8.97 3.11 -507.84 -1.58 -10.54 16 13 C 0.08 1.97 11.18 83.93 0.94 2.91 16 14 C 0.09 1.00 6.89 86.33 0.59 1.60 16 15 C -0.13 -1.02 5.91 30.69 0.18 -0.84 16 16 C -0.12 -1.18 5.96 30.77 0.18 -1.00 16 17 C -0.06 -0.87 6.26 30.10 0.19 -0.69 16 18 C -0.11 -4.30 5.58 30.64 0.17 -4.13 16 19 C -0.13 -5.03 5.93 30.69 0.18 -4.85 16 20 C 0.18 8.67 5.29 86.36 0.46 9.12 16 21 N -0.60 -28.57 2.65 -675.20 -1.79 -30.36 16 22 C -0.24 -12.56 8.63 84.03 0.73 -11.84 16 23 H 0.08 3.85 6.20 -2.91 -0.02 3.83 16 24 C -0.05 -2.71 4.97 84.86 0.42 -2.29 16 25 N -0.94 -54.45 11.09 21.65 0.24 -54.21 16 26 Si 0.96 43.71 29.58 68.60 2.03 45.74 16 27 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 28 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 29 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 30 H 0.05 2.01 6.40 -2.39 -0.02 1.99 16 31 H 0.05 1.97 7.66 -2.39 -0.02 1.95 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.41 15.59 6.90 -92.70 -0.64 14.95 16 34 H 0.14 4.14 7.70 -2.91 -0.02 4.12 16 35 H 0.18 4.14 8.06 -2.91 -0.02 4.12 16 36 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.07 0.67 8.11 -2.39 -0.02 0.65 16 40 H 0.07 0.69 8.11 -2.39 -0.02 0.67 16 41 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.05 2.00 7.53 -2.39 -0.02 1.98 16 48 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 49 H 0.06 3.22 6.01 -2.39 -0.01 3.21 16 50 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -68.23 384.97 3.49 -64.73 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.29 Total: 31.81 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 5.91 Total: 5.68 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -4.67 Total: -122.45 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.07 Total: -25.51 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -68.23 3.49 -64.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994570838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.710 kcal (2) G-P(sol) polarization free energy of solvation -68.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds