Wall clock time and date at job start Sat Apr 11 2020 02:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.70607 * 2 1 4 4 C 1.53197 * 109.58713 * 120.35644 * 2 1 3 5 5 C 1.53043 * 109.31381 * 174.42058 * 4 2 1 6 6 H 1.09001 * 109.44405 * 58.65001 * 5 4 2 7 7 N 1.46498 * 109.45680 * 178.61411 * 5 4 2 8 8 C 1.36937 * 119.99592 * 205.06848 * 7 5 4 9 9 H 1.07995 * 120.00407 * 359.72424 * 8 7 5 10 10 C 1.38815 * 119.99576 * 179.72872 * 8 7 5 11 11 N 1.31616 * 120.00312 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99580 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47182 * 59.99949 * 12 10 8 14 14 H 1.48497 * 109.46951 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47090 * 299.99499 * 12 10 8 16 16 C 1.53034 * 109.53849 * 298.63528 * 5 4 2 17 17 C 1.53200 * 109.31327 * 61.36358 * 16 5 4 18 18 N 1.46924 * 108.77668 * 305.36299 * 17 16 5 19 19 C 1.34764 * 120.63222 * 233.58447 * 18 17 16 20 20 O 1.21629 * 120.00018 * 174.62106 * 19 18 17 21 21 C 1.47258 * 120.00275 * 354.62384 * 19 18 17 22 22 C 1.46697 * 126.93855 * 321.03535 * 21 19 18 23 23 C 1.34492 * 106.32814 * 179.82787 * 22 21 19 24 24 N 1.36449 * 108.85766 * 0.44013 * 23 22 21 25 25 H 0.96999 * 124.84753 * 179.68704 * 24 23 22 26 26 C 1.34655 * 110.29634 * 359.70895 * 24 23 22 27 27 C 1.50707 * 125.79879 * 179.97438 * 26 24 23 28 28 C 1.53784 * 113.61091 * 37.52091 * 27 26 24 29 29 C 1.53782 * 87.07924 * 220.01786 * 28 27 26 30 30 C 1.53776 * 113.61568 * 300.02605 * 27 26 24 31 31 H 1.08995 * 109.46840 * 176.10746 * 1 2 3 32 32 H 1.09003 * 109.46922 * 296.10695 * 1 2 3 33 33 H 1.08997 * 109.46877 * 56.10232 * 1 2 3 34 34 H 1.09000 * 109.49753 * 54.46875 * 4 2 1 35 35 H 1.09000 * 109.49602 * 294.37399 * 4 2 1 36 36 H 0.97003 * 119.99989 * 24.79550 * 7 5 4 37 37 H 0.97002 * 119.99779 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.49868 * 181.31720 * 16 5 4 39 39 H 1.09004 * 109.49957 * 301.41690 * 16 5 4 40 40 H 1.09004 * 109.58401 * 65.15234 * 17 16 5 41 41 H 1.09000 * 109.58564 * 185.43568 * 17 16 5 42 42 H 1.07999 * 126.83442 * 359.97438 * 22 21 19 43 43 H 1.07998 * 125.56758 * 180.14164 * 23 22 21 44 44 H 1.09000 * 112.85004 * 168.82537 * 27 26 24 45 45 H 1.09000 * 113.61596 * 334.56449 * 28 27 26 46 46 H 1.09007 * 113.61607 * 105.47259 * 28 27 26 47 47 H 1.08995 * 113.61420 * 270.88625 * 29 28 27 48 48 H 1.09003 * 113.61401 * 139.98201 * 29 28 27 49 49 H 1.09000 * 113.61360 * 254.53244 * 30 27 26 50 50 H 1.09004 * 113.61444 * 25.42849 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5676 -0.8481 1.1701 6 1 4.0059 0.1474 1.0992 7 7 4.0652 -1.5158 2.3754 8 6 5.3492 -1.2977 2.7982 9 1 5.9965 -0.6370 2.2408 10 6 5.8189 -1.9261 3.9434 11 7 5.0304 -2.7319 4.6225 12 14 7.5709 -1.6291 4.5198 13 1 7.7614 -0.1834 4.8001 14 1 7.8239 -2.4102 5.7572 15 1 8.5197 -2.0574 3.4609 16 6 3.9569 -1.6658 -0.0634 17 6 3.4650 -0.9470 -1.3237 18 7 2.0225 -0.6996 -1.1945 19 6 1.1675 -1.1061 -2.1536 20 8 -0.0316 -0.9836 -1.9910 21 6 1.6850 -1.6987 -3.3984 22 6 2.8744 -1.2782 -4.1471 23 6 2.9637 -2.1003 -5.2077 24 7 1.9217 -2.9805 -5.1725 25 1 1.7596 -3.6741 -5.8310 26 6 1.1505 -2.7484 -4.0934 27 6 -0.0911 -3.5148 -3.7158 28 6 0.0036 -5.0221 -4.0055 29 6 -1.4582 -4.9435 -4.4764 30 6 -1.1974 -3.4592 -4.7824 31 1 -0.3633 -1.0253 -0.0698 32 1 -0.3633 0.4522 0.9229 33 1 -0.3633 0.5731 -0.8530 34 1 1.6030 -1.7253 1.2913 35 1 1.7660 -0.1669 2.1368 36 1 3.4838 -2.1094 2.8761 37 1 5.3586 -3.1706 5.4230 38 1 5.0412 -1.7697 -0.1036 39 1 3.4983 -2.6529 -0.0053 40 1 3.9903 0.0020 -1.4316 41 1 3.6541 -1.5707 -2.1974 42 1 3.5460 -0.4709 -3.8952 43 1 3.7318 -2.0659 -5.9662 44 1 -0.4420 -3.2832 -2.7102 45 1 0.7059 -5.2706 -4.8012 46 1 0.1423 -5.6307 -3.1118 47 1 -2.1832 -5.1039 -3.6784 48 1 -1.6641 -5.5426 -5.3634 49 1 -2.0283 -2.8059 -4.5160 50 1 -0.8235 -3.2804 -5.7906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044745837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:04 Heat of formation + Delta-G solvation = 53.300806 kcal Electronic energy + Delta-G solvation = -29399.322306 eV Core-core repulsion = 25621.469015 eV Total energy + Delta-G solvation = -3777.853292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.61848 -39.80148 -38.42866 -37.09176 -34.36841 -32.89382 -31.82777 -30.64101 -29.92215 -29.10544 -26.91453 -25.90136 -25.35786 -24.21400 -23.00199 -22.77008 -21.17782 -20.72015 -19.78453 -19.62791 -18.32343 -17.78864 -17.03433 -15.90305 -15.81438 -15.58434 -15.08360 -14.75606 -14.73278 -14.28366 -13.93297 -13.75337 -13.60700 -13.19674 -13.08526 -13.00711 -12.81617 -12.69477 -12.52456 -12.39215 -12.25601 -11.92554 -11.84717 -11.44970 -11.23566 -10.98883 -10.85976 -10.76218 -10.71634 -10.63061 -10.54605 -10.33054 -10.22417 -9.76044 -9.64659 -8.95715 -8.84996 -8.67178 -8.30101 -8.11364 -6.92642 -5.73729 -3.02378 1.84613 2.37539 2.96862 3.32445 3.45055 3.49411 3.50517 3.56361 4.29854 4.37781 4.42196 4.60582 4.68838 4.83065 4.91495 5.03181 5.28106 5.29891 5.30878 5.36904 5.40297 5.44406 5.52169 5.55445 5.60857 5.62111 5.69534 5.73899 5.75096 5.79738 5.84127 5.97104 6.02144 6.08229 6.14149 6.18768 6.27125 6.38371 6.52615 6.57619 6.62552 6.66554 6.68247 6.86647 6.90665 7.05914 7.17031 7.31731 7.71428 7.81728 8.44810 8.57727 9.55707 10.14479 10.49342 11.48930 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.002899 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.129934 B = 9655.794212 C = 9907.518193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.148 3.852 3 H 0.068 0.932 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.046 0.954 7 N -0.724 5.724 8 C -0.238 4.238 9 H 0.069 0.931 10 C -0.014 4.014 11 N -0.933 5.933 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.149 4.149 17 C 0.103 3.897 18 N -0.596 5.596 19 C 0.590 3.410 20 O -0.547 6.547 21 C -0.219 4.219 22 C -0.167 4.167 23 C -0.017 4.017 24 N -0.552 5.552 25 H 0.412 0.588 26 C 0.105 3.895 27 C -0.045 4.045 28 C -0.140 4.140 29 C -0.141 4.141 30 C -0.130 4.130 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.146 0.854 43 H 0.168 0.832 44 H 0.121 0.879 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.068 0.932 49 H 0.076 0.924 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 -0.969 -23.179 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.044 3.956 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.064 0.936 7 N -0.365 5.365 8 C -0.369 4.369 9 H 0.087 0.913 10 C -0.210 4.210 11 N -0.582 5.582 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.190 4.190 17 C -0.020 4.020 18 N -0.328 5.328 19 C 0.380 3.620 20 O -0.427 6.427 21 C -0.228 4.228 22 C -0.192 4.192 23 C -0.145 4.145 24 N -0.147 5.147 25 H 0.248 0.752 26 C -0.012 4.012 27 C -0.064 4.064 28 C -0.177 4.177 29 C -0.178 4.178 30 C -0.167 4.167 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.164 0.836 43 H 0.185 0.815 44 H 0.139 0.861 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.121 -0.922 -23.111 25.247 hybrid contribution 1.186 -0.378 0.220 1.264 sum -8.935 -1.300 -22.891 24.608 Atomic orbital electron populations 1.22184 0.92920 1.03639 1.00136 1.21282 0.95370 0.94890 0.84012 0.91422 1.22286 0.97514 1.00907 0.96588 1.20175 0.90960 0.94875 0.87131 0.93597 1.42431 1.12800 1.54516 1.26707 1.19196 0.89154 1.22322 1.06210 0.91257 1.24739 0.98086 0.99975 0.98199 1.69654 1.35416 1.33830 1.19281 0.86289 0.84700 0.77447 0.77882 1.21306 1.21759 1.21319 1.22643 1.01423 0.99984 0.94943 1.22042 0.79456 1.00348 1.00129 1.47992 1.07712 1.57313 1.19804 1.17429 0.85463 0.77133 0.81992 1.90792 1.15349 1.56621 1.79955 1.20247 1.00406 1.02771 0.99419 1.22074 0.98399 1.02370 0.96320 1.21691 0.94795 0.95262 1.02751 1.41426 1.22163 1.29229 1.21922 0.75214 1.19892 0.94615 0.98034 0.88657 1.21314 0.90402 0.93234 1.01478 1.23019 0.97117 0.95970 1.01644 1.22833 0.96809 0.96627 1.01550 1.22933 0.98648 0.96982 0.98184 0.91113 0.94222 0.91464 0.91879 0.90828 0.78307 0.93506 0.90929 0.92399 0.92118 0.89122 0.83643 0.81501 0.86112 0.90780 0.90620 0.89633 0.91344 0.90544 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 7.59 37.16 0.28 -1.72 16 2 C 0.15 2.30 3.49 -67.59 -0.24 2.06 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -2.36 4.84 -26.61 -0.13 -2.48 16 5 C 0.18 3.56 2.73 -67.89 -0.19 3.37 16 6 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 7 N -0.72 -18.21 5.12 -53.39 -0.27 -18.48 16 8 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 9 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 11 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 12 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 C -0.15 -2.65 5.66 -26.61 -0.15 -2.80 16 17 C 0.10 1.49 5.53 -3.71 -0.02 1.47 16 18 N -0.60 -9.11 2.97 -166.53 -0.49 -9.61 16 19 C 0.59 9.26 7.28 -12.60 -0.09 9.16 16 20 O -0.55 -9.46 11.29 5.25 0.06 -9.40 16 21 C -0.22 -2.94 5.34 -103.35 -0.55 -3.49 16 22 C -0.17 -1.85 8.68 -37.49 -0.33 -2.17 16 23 C -0.02 -0.15 11.89 -16.82 -0.20 -0.35 16 24 N -0.55 -4.64 5.72 -9.10 -0.05 -4.69 16 25 H 0.41 2.25 8.21 -40.82 -0.34 1.91 16 26 C 0.10 1.19 6.22 -81.88 -0.51 0.68 16 27 C -0.05 -0.47 3.88 -90.96 -0.35 -0.83 16 28 C -0.14 -1.14 7.62 -25.92 -0.20 -1.34 16 29 C -0.14 -1.02 8.08 -25.92 -0.21 -1.23 16 30 C -0.13 -1.11 7.63 -25.92 -0.20 -1.30 16 31 H 0.07 1.18 6.73 -51.93 -0.35 0.83 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.06 6.77 -51.93 -0.35 0.71 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.38 10.36 7.80 -40.82 -0.32 10.04 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.21 4.70 -51.93 -0.24 0.96 16 42 H 0.15 1.45 7.42 -52.49 -0.39 1.06 16 43 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 1.55 7.01 -51.93 -0.36 1.19 16 45 H 0.07 0.50 7.21 -51.93 -0.37 0.12 16 46 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 47 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 LS Contribution 386.70 15.07 5.83 5.83 Total: -1.00 -32.41 386.70 -10.74 -43.15 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -8.19 Total: 11.65 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -3.32 Total: -8.17 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.10 Total: -60.40 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.06 Total: -9.40 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.41 -10.74 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044745837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.448 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds