Wall clock time and date at job start Sat Apr 11 2020 02:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.69572 * 2 1 4 4 C 1.53189 * 109.58572 * 239.64721 * 2 1 3 5 5 C 1.53045 * 109.31054 * 185.57312 * 4 2 1 6 6 H 1.08997 * 109.46315 * 301.36006 * 5 4 2 7 7 N 1.46495 * 109.46142 * 181.38402 * 5 4 2 8 8 C 1.36937 * 120.00268 * 154.97558 * 7 5 4 9 9 H 1.08003 * 119.99754 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00177 * 180.02562 * 8 7 5 11 11 N 1.31614 * 119.99854 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00018 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47283 * 0.02562 * 12 10 8 14 14 H 1.48492 * 109.47581 * 239.99942 * 12 10 8 15 15 H 1.48505 * 109.47210 * 119.99972 * 12 10 8 16 16 C 1.53045 * 109.52456 * 61.37080 * 5 4 2 17 17 C 1.53191 * 109.31058 * 298.61240 * 16 5 4 18 18 N 1.46918 * 109.58880 * 120.35004 * 2 1 3 19 19 C 1.34777 * 120.63046 * 353.42753 * 18 2 1 20 20 O 1.21623 * 120.00202 * 5.90964 * 19 18 2 21 21 C 1.47270 * 119.99845 * 185.91199 * 19 18 2 22 22 C 1.46685 * 126.94155 * 31.13015 * 21 19 18 23 23 C 1.34487 * 106.33013 * 179.82791 * 22 21 19 24 24 N 1.36442 * 108.85601 * 0.43074 * 23 22 21 25 25 H 0.97001 * 124.85256 * 179.68894 * 24 23 22 26 26 C 1.34655 * 110.30145 * 359.71054 * 24 23 22 27 27 C 1.50699 * 125.80516 * 180.02562 * 26 24 23 28 28 C 1.53775 * 113.61206 * 39.11594 * 27 26 24 29 29 C 1.53954 * 87.02017 * 220.04739 * 28 27 26 30 30 C 1.53780 * 87.11182 * 25.36244 * 29 28 27 31 31 H 1.08999 * 109.46768 * 183.07803 * 1 2 3 32 32 H 1.08999 * 109.47355 * 303.07734 * 1 2 3 33 33 H 1.08996 * 109.47086 * 63.08105 * 1 2 3 34 34 H 1.08995 * 109.50352 * 65.62422 * 4 2 1 35 35 H 1.08998 * 109.49764 * 305.52319 * 4 2 1 36 36 H 0.97001 * 120.00011 * 334.97264 * 7 5 4 37 37 H 0.97002 * 120.00307 * 0.02562 * 11 10 8 38 38 H 1.08999 * 109.49943 * 58.57615 * 16 5 4 39 39 H 1.08995 * 109.49622 * 178.67784 * 16 5 4 40 40 H 1.08997 * 109.60357 * 294.86644 * 17 16 5 41 41 H 1.09007 * 109.70248 * 174.50659 * 17 16 5 42 42 H 1.08007 * 126.83516 * 359.97438 * 22 21 19 43 43 H 1.08004 * 125.56768 * 180.14138 * 23 22 21 44 44 H 1.09000 * 112.85053 * 170.31073 * 27 26 24 45 45 H 1.08998 * 113.61711 * 334.56472 * 28 27 26 46 46 H 1.08997 * 113.61651 * 105.47275 * 28 27 26 47 47 H 1.09001 * 113.53697 * 270.81196 * 29 28 27 48 48 H 1.09001 * 113.74487 * 139.94530 * 29 28 27 49 49 H 1.08995 * 113.61548 * 220.09324 * 30 29 28 50 50 H 1.09002 * 113.69161 * 89.19615 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 3.5676 -0.8478 -1.1702 6 1 4.0061 0.1475 -1.0991 7 7 4.0653 -1.5155 -2.3754 8 6 5.3496 -1.2980 -2.7978 9 1 5.9955 -0.6339 -2.2426 10 6 5.8211 -1.9303 -3.9401 11 7 5.0338 -2.7393 -4.6169 12 14 7.5728 -1.6331 -4.5166 13 1 8.2462 -0.6898 -3.5882 14 1 7.5525 -1.0532 -5.8835 15 1 8.3127 -2.9205 -4.5361 16 6 3.9567 -1.6657 0.0635 17 6 3.4651 -0.9467 1.3237 18 7 2.0226 -0.6994 1.1945 19 6 1.1674 -1.1069 2.1531 20 8 -0.0320 -0.9938 1.9863 21 6 1.6853 -1.6891 3.4028 22 6 2.9516 -1.3644 4.0682 23 6 3.0063 -2.1311 5.1718 24 7 1.8827 -2.9029 5.2287 25 1 1.6863 -3.5454 5.9284 26 6 1.0854 -2.6459 4.1744 27 6 -0.2423 -3.3007 3.8927 28 6 -1.0937 -3.5335 5.1519 29 6 -1.4815 -4.8923 4.5407 30 6 -0.1587 -4.8304 3.7589 31 1 -0.3633 -1.0262 0.0552 32 1 -0.3634 0.5609 0.8611 33 1 -0.3633 0.4652 -0.9163 34 1 1.7661 -0.1668 -2.1368 35 1 1.6031 -1.7253 -1.2913 36 1 3.4851 -2.1118 -2.8742 37 1 4.1240 -2.8934 -4.3177 38 1 3.4980 -2.6527 0.0052 39 1 5.0410 -1.7697 0.1038 40 1 3.9903 0.0022 1.4317 41 1 3.6522 -1.5694 2.1986 42 1 3.6915 -0.6498 3.7389 43 1 3.8107 -2.1382 5.8925 44 1 -0.7871 -2.8205 3.0799 45 1 -0.5067 -3.6178 6.0665 46 1 -1.9307 -2.8418 5.2471 47 1 -2.3664 -4.8473 3.9058 48 1 -1.5222 -5.7045 5.2665 49 1 -0.2419 -5.1840 2.7313 50 1 0.6853 -5.2697 4.2908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044745839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:11 Heat of formation + Delta-G solvation = 55.774073 kcal Electronic energy + Delta-G solvation = -29442.467334 eV Core-core repulsion = 25664.721292 eV Total energy + Delta-G solvation = -3777.746043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.67094 -39.85815 -38.45004 -37.18399 -34.61590 -33.00931 -31.96415 -30.64869 -29.95372 -28.92001 -26.90357 -25.94053 -25.38823 -24.04668 -23.03605 -22.91836 -21.27324 -20.74872 -19.90863 -19.67198 -18.37737 -17.79679 -17.21870 -15.93129 -15.86157 -15.62507 -15.27394 -14.77309 -14.74667 -14.31970 -14.04007 -13.91866 -13.61246 -13.34253 -13.20068 -13.08767 -12.85097 -12.73636 -12.54482 -12.44981 -12.38073 -11.97969 -11.84964 -11.48189 -11.29332 -11.01262 -10.79022 -10.75480 -10.69526 -10.57688 -10.47333 -10.32814 -10.03523 -9.97160 -9.16449 -8.97376 -8.85798 -8.71544 -8.34797 -8.15870 -6.99694 -6.07254 -3.06769 1.76899 2.32197 2.93096 3.31299 3.52563 3.55230 3.59539 3.68632 4.26954 4.35697 4.38929 4.66341 4.68237 4.78732 4.88709 4.98598 5.20221 5.23813 5.27140 5.31640 5.37434 5.40478 5.44652 5.53696 5.57704 5.58837 5.66066 5.69541 5.70836 5.73697 5.79310 5.90504 5.97476 6.01185 6.08172 6.17650 6.19984 6.26006 6.43997 6.49963 6.52746 6.59534 6.64074 6.81020 6.85041 6.98585 7.09545 7.27889 7.76781 7.84528 8.53138 8.78683 9.26407 10.12838 10.28608 11.41382 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.002890 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.045624 B = 9687.014834 C = 9964.629401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.148 3.852 3 H 0.068 0.932 4 C -0.135 4.135 5 C 0.184 3.816 6 H 0.047 0.953 7 N -0.736 5.736 8 C -0.328 4.328 9 H 0.065 0.935 10 C -0.047 4.047 11 N -0.946 5.946 12 Si 1.085 2.915 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.294 1.294 16 C -0.148 4.148 17 C 0.098 3.902 18 N -0.596 5.596 19 C 0.591 3.409 20 O -0.549 6.549 21 C -0.222 4.222 22 C -0.169 4.169 23 C -0.018 4.018 24 N -0.552 5.552 25 H 0.412 0.588 26 C 0.109 3.891 27 C -0.052 4.052 28 C -0.135 4.135 29 C -0.140 4.140 30 C -0.136 4.136 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.366 0.634 37 H 0.256 0.744 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.149 0.851 43 H 0.168 0.832 44 H 0.130 0.870 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.068 0.932 49 H 0.075 0.925 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 -0.401 23.800 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.045 3.955 3 H 0.086 0.914 4 C -0.174 4.174 5 C 0.074 3.926 6 H 0.065 0.935 7 N -0.378 5.378 8 C -0.459 4.459 9 H 0.083 0.917 10 C -0.244 4.244 11 N -0.592 5.592 12 Si 0.916 3.084 13 H -0.221 1.221 14 H -0.221 1.221 15 H -0.221 1.221 16 C -0.189 4.189 17 C -0.025 4.025 18 N -0.328 5.328 19 C 0.382 3.618 20 O -0.430 6.430 21 C -0.232 4.232 22 C -0.194 4.194 23 C -0.145 4.145 24 N -0.147 5.147 25 H 0.248 0.752 26 C -0.008 4.008 27 C -0.071 4.071 28 C -0.173 4.173 29 C -0.177 4.177 30 C -0.174 4.174 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.199 0.801 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.114 0.886 42 H 0.166 0.834 43 H 0.186 0.814 44 H 0.148 0.852 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.087 0.913 49 H 0.093 0.907 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.919 -0.628 22.720 24.416 hybrid contribution -0.913 -0.073 1.390 1.665 sum -9.832 -0.701 24.111 26.048 Atomic orbital electron populations 1.22187 0.92842 1.03598 1.00254 1.21261 0.95423 0.94871 0.83934 0.91384 1.22300 0.97524 1.00834 0.96755 1.20114 0.90801 0.94909 0.86774 0.93470 1.42460 1.13012 1.54804 1.27518 1.20096 0.89644 1.26104 1.10095 0.91720 1.25746 1.06248 0.97725 0.94707 1.70802 1.08208 1.38570 1.41575 0.83160 0.74277 0.75467 0.75505 1.22140 1.22066 1.22099 1.22618 1.01477 0.99852 0.94980 1.22209 0.79506 1.00452 1.00319 1.47961 1.07689 1.57356 1.19836 1.17408 0.85434 0.76972 0.82026 1.90763 1.15337 1.56846 1.80044 1.20247 0.98179 1.05467 0.99274 1.22170 0.97394 1.03571 0.96229 1.21716 0.92198 0.98535 1.02058 1.41454 1.17276 1.34344 1.21616 0.75189 1.19934 0.93799 0.98313 0.88739 1.21482 0.90420 0.94965 1.00235 1.22982 0.99930 0.97857 0.96497 1.22851 0.97970 0.97235 0.99672 1.23002 0.97762 0.95066 1.01568 0.91148 0.91303 0.94243 0.90932 0.92002 0.80094 0.93299 0.92544 0.90879 0.92062 0.88566 0.83355 0.81439 0.85174 0.90899 0.90661 0.89639 0.91305 0.90660 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 7.59 37.16 0.28 -1.72 16 2 C 0.15 2.32 3.49 -67.60 -0.24 2.08 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.39 4.84 -26.61 -0.13 -2.52 16 5 C 0.18 3.71 2.73 -67.89 -0.19 3.53 16 6 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 7 N -0.74 -18.58 5.12 -53.38 -0.27 -18.86 16 8 C -0.33 -9.21 9.93 -15.06 -0.15 -9.36 16 9 H 0.06 1.79 7.83 -52.48 -0.41 1.38 16 10 C -0.05 -1.37 5.50 -17.43 -0.10 -1.46 16 11 N -0.95 -29.53 13.70 55.49 0.76 -28.77 16 12 Si 1.08 26.15 29.92 -169.99 -5.09 21.06 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 C -0.15 -2.67 5.66 -26.61 -0.15 -2.82 16 17 C 0.10 1.42 5.34 -3.71 -0.02 1.40 16 18 N -0.60 -9.16 2.97 -166.54 -0.49 -9.65 16 19 C 0.59 9.28 7.45 -12.59 -0.09 9.19 16 20 O -0.55 -9.41 10.64 5.26 0.06 -9.36 16 21 C -0.22 -2.98 5.59 -103.35 -0.58 -3.56 16 22 C -0.17 -1.87 8.62 -37.50 -0.32 -2.20 16 23 C -0.02 -0.15 11.89 -16.83 -0.20 -0.35 16 24 N -0.55 -4.61 5.72 -9.11 -0.05 -4.66 16 25 H 0.41 2.21 8.30 -40.82 -0.34 1.87 16 26 C 0.11 1.24 6.21 -81.89 -0.51 0.73 16 27 C -0.05 -0.54 4.01 -90.96 -0.36 -0.90 16 28 C -0.13 -1.05 7.63 -25.83 -0.20 -1.25 16 29 C -0.14 -1.01 8.09 -25.83 -0.21 -1.21 16 30 C -0.14 -1.19 7.63 -25.92 -0.20 -1.39 16 31 H 0.07 1.17 6.77 -51.93 -0.35 0.82 16 32 H 0.07 1.09 6.73 -51.93 -0.35 0.74 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.37 9.65 6.63 -40.82 -0.27 9.38 16 37 H 0.26 7.89 6.77 -40.82 -0.28 7.62 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 1.27 4.25 -51.92 -0.22 1.05 16 42 H 0.15 1.49 6.80 -52.48 -0.36 1.13 16 43 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.13 1.67 6.35 -51.93 -0.33 1.34 16 45 H 0.07 0.46 7.29 -51.93 -0.38 0.08 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -33.49 383.08 -10.66 -44.16 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -7.99 Total: 12.11 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.36 Total: -11.81 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -0.06 Total: -61.94 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.06 Total: -9.36 kcal Atomic # 14 Polarization: 26.15 SS G_CDS: -5.09 Total: 21.06 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.49 -10.66 -44.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044745839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.932 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds