Wall clock time and date at job start Sat Apr 11 2020 02:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46791 * 2 1 4 4 C 1.50701 * 109.47348 * 120.00101 * 2 1 3 5 5 C 1.38626 * 120.31943 * 120.02460 * 4 2 1 6 6 C 1.38592 * 118.48300 * 179.70965 * 5 4 2 7 7 C 1.39309 * 119.05920 * 0.50611 * 6 5 4 8 8 C 1.48176 * 119.72347 * 179.75676 * 7 6 5 9 9 O 1.21516 * 119.99500 * 350.52294 * 8 7 6 10 10 N 1.34766 * 120.00018 * 170.52218 * 8 7 6 11 11 C 1.46925 * 120.63239 * 352.30153 * 10 8 7 12 12 C 1.53189 * 108.77970 * 233.58732 * 11 10 8 13 13 C 1.53039 * 109.31298 * 305.36535 * 12 11 10 14 14 H 1.08996 * 109.45063 * 301.35238 * 13 12 11 15 15 N 1.46499 * 109.46336 * 181.38427 * 13 12 11 16 16 C 1.36928 * 119.99991 * 84.92909 * 15 13 12 17 17 H 1.08005 * 120.00354 * 359.72929 * 16 15 13 18 18 C 1.38819 * 120.00053 * 179.72855 * 16 15 13 19 19 N 1.31617 * 119.99915 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00019 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47420 * 59.99590 * 20 18 16 22 22 H 1.48500 * 109.46978 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46807 * 299.99661 * 20 18 16 24 24 C 1.53049 * 109.53879 * 61.36424 * 13 12 11 25 25 C 1.46931 * 120.63156 * 172.28026 * 10 8 7 26 26 H 1.09000 * 109.58194 * 6.62879 * 25 10 8 27 27 C 1.52993 * 109.58741 * 246.19873 * 25 10 8 28 28 N 1.32711 * 120.55455 * 359.48118 * 7 6 5 29 29 C 1.31525 * 121.64171 * 0.27588 * 28 7 6 30 30 H 1.09003 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47140 * 299.99366 * 1 2 3 32 32 H 1.08996 * 109.47742 * 59.99505 * 1 2 3 33 33 H 1.09000 * 109.47140 * 240.00634 * 2 1 3 34 34 H 1.09002 * 109.47227 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47190 * 300.00198 * 3 2 1 36 36 H 1.09000 * 109.47494 * 60.00536 * 3 2 1 37 37 H 1.07995 * 120.75873 * 359.97438 * 5 4 2 38 38 H 1.08000 * 120.47225 * 180.28791 * 6 5 4 39 39 H 1.08997 * 109.58889 * 353.37690 * 11 10 8 40 40 H 1.09004 * 109.58306 * 113.65785 * 11 10 8 41 41 H 1.08995 * 109.50051 * 185.41487 * 12 11 10 42 42 H 1.08998 * 109.49935 * 65.31838 * 12 11 10 43 43 H 0.97003 * 120.00030 * 264.65699 * 15 13 12 44 44 H 0.97004 * 119.99801 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.49566 * 58.58456 * 24 13 12 46 46 H 1.08992 * 109.49679 * 178.65335 * 24 13 12 47 47 H 1.08993 * 109.47566 * 300.71399 * 27 25 10 48 48 H 1.09007 * 109.47012 * 60.71192 * 27 25 10 49 49 H 1.09005 * 109.46769 * 180.70411 * 27 25 10 50 50 H 1.08008 * 119.54788 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8302 -1.8378 1.1109 6 6 3.2761 -2.4576 2.2675 7 6 2.9002 -1.9353 3.5031 8 6 3.3641 -2.5895 4.7491 9 8 3.9212 -3.6682 4.6977 10 7 3.1681 -1.9882 5.9391 11 6 2.6507 -0.6148 6.0077 12 6 3.6025 0.2287 6.8617 13 6 3.7881 -0.4418 8.2249 14 1 2.8196 -0.5431 8.7144 15 7 4.6718 0.3792 9.0564 16 6 4.1568 1.4191 9.7832 17 1 3.0998 1.6369 9.7401 18 6 4.9932 2.1935 10.5755 19 7 6.2812 1.9278 10.6285 20 14 4.2905 3.6118 11.5676 21 1 3.2733 3.0950 12.5179 22 1 5.3826 4.2761 12.3234 23 1 3.6572 4.5922 10.6494 24 6 4.4100 -1.8271 8.0335 25 6 3.4672 -2.6938 7.1927 26 1 3.9479 -3.6464 6.9700 27 6 2.1698 -2.9388 7.9656 28 7 2.1347 -0.8535 3.5736 29 6 1.7018 -0.2429 2.4921 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6765 1.9563 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 3.1017 -2.2217 0.1387 38 1 3.9031 -3.3352 2.2118 39 1 2.5925 -0.1956 5.0032 40 1 1.6587 -0.6201 6.4594 41 1 3.1813 1.2243 7.0005 42 1 4.5674 0.3079 6.3609 43 1 5.6211 0.1836 9.0951 44 1 6.8657 2.4692 11.1818 45 1 5.3673 -1.7286 7.5215 46 1 4.5640 -2.2942 9.0061 47 1 1.6892 -1.9845 8.1807 48 1 1.5005 -3.5556 7.3657 49 1 2.3953 -3.4512 8.9009 50 1 1.0807 0.6354 2.5889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044746745.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:17 Heat of formation + Delta-G solvation = 15.244456 kcal Electronic energy + Delta-G solvation = -28909.447731 eV Core-core repulsion = 25129.944192 eV Total energy + Delta-G solvation = -3779.503539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12433 -39.62476 -37.54320 -36.23535 -34.50425 -32.91375 -32.11805 -31.72429 -30.38751 -29.18553 -27.56861 -27.20605 -25.16410 -24.26878 -23.89381 -22.73649 -21.98806 -20.85476 -20.54669 -18.62604 -17.53973 -17.18185 -16.90268 -15.84895 -15.74072 -15.34971 -14.90513 -14.80255 -14.54400 -14.26932 -14.02095 -13.93845 -13.75429 -13.42842 -13.37405 -13.31946 -13.01921 -12.77717 -12.60633 -12.54532 -12.37092 -11.75583 -11.64989 -11.60166 -11.43393 -11.26421 -11.17839 -10.86172 -10.77791 -10.71285 -10.42742 -10.19511 -10.17809 -10.06908 -9.70474 -9.54435 -9.25754 -9.10523 -8.69709 -8.34873 -6.90886 -5.73220 -3.01655 0.44000 0.93960 2.68728 3.05892 3.45273 3.49619 3.50741 3.65546 3.92349 4.22017 4.32727 4.54758 4.57137 4.61486 4.72445 4.81861 4.92297 5.06664 5.18702 5.21157 5.31853 5.37125 5.41113 5.41249 5.47687 5.53014 5.56750 5.63470 5.67721 5.73045 5.75170 5.80755 5.85247 5.89167 5.97208 6.02906 6.05732 6.18335 6.26877 6.37830 6.49402 6.56071 6.62575 6.65471 6.81874 7.04199 7.17447 7.44664 7.65617 7.71933 8.23960 8.45370 9.56147 10.15169 10.49960 11.49504 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.002946 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.597701 B = 9502.359880 C =10922.960578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.054 4.054 3 C -0.148 4.148 4 C -0.110 4.110 5 C -0.080 4.080 6 C -0.109 4.109 7 C 0.080 3.920 8 C 0.567 3.433 9 O -0.546 6.546 10 N -0.576 5.576 11 C 0.073 3.927 12 C -0.150 4.150 13 C 0.178 3.822 14 H 0.050 0.950 15 N -0.725 5.725 16 C -0.236 4.236 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C -0.132 4.132 25 C 0.138 3.862 26 H 0.094 0.906 27 C -0.159 4.159 28 N -0.439 5.439 29 C 0.096 3.904 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.051 0.949 49 H 0.068 0.932 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.500 -6.775 -23.112 26.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 C -0.205 4.205 4 C -0.112 4.112 5 C -0.106 4.106 6 C -0.129 4.129 7 C -0.057 4.057 8 C 0.353 3.647 9 O -0.425 6.425 10 N -0.306 5.306 11 C -0.050 4.050 12 C -0.191 4.191 13 C 0.068 3.932 14 H 0.068 0.932 15 N -0.365 5.365 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.171 4.171 25 C 0.035 3.965 26 H 0.112 0.888 27 C -0.217 4.217 28 N -0.151 5.151 29 C -0.062 4.062 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.158 0.842 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.216 0.784 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.504 -6.908 -22.148 25.896 hybrid contribution 0.256 0.605 -0.128 0.669 sum -11.249 -6.303 -22.275 25.738 Atomic orbital electron populations 1.21882 0.93794 1.02243 1.02455 1.20129 0.96291 0.96279 0.94594 1.21890 1.01497 0.94603 1.02488 1.21101 0.97455 0.96026 0.96629 1.21529 0.95731 0.94384 0.98977 1.22097 0.98804 1.00494 0.91538 1.21264 0.97066 0.93305 0.94047 1.17887 0.79281 0.84653 0.82848 1.90746 1.43331 1.21934 1.86439 1.48101 1.62148 1.15688 1.04671 1.23057 0.96461 0.80010 1.05445 1.22664 0.98880 0.99586 0.97977 1.20237 0.94307 0.88572 0.90121 0.93242 1.42437 1.07123 1.34628 1.52334 1.19190 0.93016 1.05643 1.18904 0.91279 1.24739 0.95528 0.99923 1.00865 1.69656 1.02746 1.41894 1.43939 0.86289 0.77586 0.82440 0.80004 1.21314 1.21768 1.21319 1.22198 0.98430 0.96940 0.99533 1.21266 0.96013 0.96275 0.82965 0.88754 1.22129 0.97171 1.02370 1.00019 1.67728 1.09491 1.06764 1.31067 1.22827 0.97054 0.99179 0.87179 0.92445 0.92078 0.91954 0.90071 0.92320 0.91951 0.92010 0.84227 0.83453 0.84405 0.92138 0.90938 0.92766 0.78375 0.93523 0.91924 0.90632 0.91519 0.93009 0.91299 0.82170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.01 37.16 0.33 -0.39 16 2 C -0.05 -0.30 3.11 -91.77 -0.28 -0.58 16 3 C -0.15 -0.79 9.01 37.16 0.33 -0.46 16 4 C -0.11 -0.87 4.80 -104.36 -0.50 -1.37 16 5 C -0.08 -0.66 9.79 -39.31 -0.39 -1.05 16 6 C -0.11 -1.19 9.63 -39.05 -0.38 -1.57 16 7 C 0.08 1.08 6.58 -83.01 -0.55 0.53 16 8 C 0.57 9.10 7.65 -12.18 -0.09 9.00 16 9 O -0.55 -9.88 15.79 5.35 0.08 -9.80 16 10 N -0.58 -9.09 2.68 -166.20 -0.45 -9.54 16 11 C 0.07 1.12 5.47 -3.71 -0.02 1.09 16 12 C -0.15 -2.76 5.66 -26.61 -0.15 -2.91 16 13 C 0.18 3.57 2.52 -67.89 -0.17 3.39 16 14 H 0.05 1.01 6.44 -51.93 -0.33 0.67 16 15 N -0.72 -18.34 5.12 -53.38 -0.27 -18.61 16 16 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 17 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 20 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C -0.13 -2.34 5.02 -26.60 -0.13 -2.47 16 25 C 0.14 2.16 3.22 -67.60 -0.22 1.95 16 26 H 0.09 1.52 7.00 -51.93 -0.36 1.16 16 27 C -0.16 -2.20 9.02 37.15 0.34 -1.86 16 28 N -0.44 -5.38 6.12 -9.80 -0.06 -5.44 16 29 C 0.10 0.90 9.90 -17.57 -0.17 0.73 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 7.41 -51.93 -0.38 -0.08 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.38 7.92 -51.93 -0.41 -0.04 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.34 7.41 -51.93 -0.38 -0.05 16 37 H 0.14 0.76 8.00 -52.49 -0.42 0.34 16 38 H 0.15 1.55 7.67 -52.49 -0.40 1.15 16 39 H 0.14 2.01 4.01 -84.95 -0.34 1.67 16 40 H 0.06 0.89 7.49 -51.93 -0.39 0.51 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.38 10.41 7.80 -40.82 -0.32 10.09 16 44 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.07 0.96 5.72 -51.93 -0.30 0.66 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.16 1.15 7.12 -52.48 -0.37 0.77 16 LS Contribution 391.01 15.07 5.89 5.89 Total: -1.00 -32.48 391.01 -9.59 -42.06 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -8.19 Total: 8.92 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.29 Total: -3.18 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.05 Total: -61.34 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.48 -9.59 -42.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044746745.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.308 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds