Wall clock time and date at job start Sat Apr 11 2020 02:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.58657 * 2 1 4 4 C 1.53196 * 109.58562 * 120.28873 * 2 1 3 5 5 C 1.53037 * 109.34033 * 65.13161 * 4 2 1 6 6 H 1.08994 * 109.46144 * 301.36221 * 5 4 2 7 7 N 1.46500 * 109.45961 * 181.40105 * 5 4 2 8 8 C 1.36936 * 119.99958 * 155.00437 * 7 5 4 9 9 H 1.07995 * 120.00201 * 359.97438 * 8 7 5 10 10 C 1.38814 * 119.99576 * 179.97438 * 8 7 5 11 11 N 1.31612 * 120.00246 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99509 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47035 * 90.00222 * 12 10 8 14 14 H 1.48504 * 109.46637 * 210.00292 * 12 10 8 15 15 H 1.48493 * 109.47191 * 329.99988 * 12 10 8 16 16 C 1.53108 * 109.50037 * 61.34965 * 5 4 2 17 17 C 1.53191 * 109.33285 * 298.65411 * 16 5 4 18 18 N 1.46921 * 108.77479 * 54.63426 * 17 16 5 19 19 C 1.34782 * 120.63170 * 126.41549 * 18 17 16 20 20 O 1.21546 * 120.00121 * 178.35245 * 19 18 17 21 21 C 1.47866 * 119.99707 * 358.35067 * 19 18 17 22 22 C 1.39614 * 120.10820 * 32.54976 * 21 19 18 23 23 C 1.37980 * 120.00166 * 179.97438 * 22 21 19 24 24 C 1.38249 * 120.23150 * 359.97438 * 23 22 21 25 25 C 1.38979 * 120.21546 * 0.02562 * 24 23 22 26 26 N 1.39713 * 120.00130 * 179.97438 * 25 24 23 27 27 C 1.46506 * 119.99816 * 354.19841 * 26 25 24 28 28 C 1.46499 * 119.99807 * 174.19309 * 26 25 24 29 29 C 1.38677 * 119.99350 * 359.69447 * 25 24 23 30 30 H 1.09007 * 109.46689 * 299.71232 * 1 2 3 31 31 H 1.09001 * 109.47531 * 59.71204 * 1 2 3 32 32 H 1.09006 * 109.47255 * 179.71640 * 1 2 3 33 33 H 1.09001 * 109.49159 * 185.10347 * 4 2 1 34 34 H 1.09004 * 109.49300 * 305.16484 * 4 2 1 35 35 H 0.96997 * 119.99593 * 334.99807 * 7 5 4 36 36 H 0.97007 * 120.00064 * 180.02562 * 11 10 8 37 37 H 1.09005 * 109.48950 * 178.69859 * 16 5 4 38 38 H 1.08994 * 109.49077 * 58.61400 * 16 5 4 39 39 H 1.09002 * 109.58424 * 294.84784 * 17 16 5 40 40 H 1.08997 * 109.59244 * 174.42421 * 17 16 5 41 41 H 1.07996 * 120.00014 * 359.95316 * 22 21 19 42 42 H 1.08010 * 119.88519 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.89049 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.47140 * 90.00130 * 27 26 25 45 45 H 1.09001 * 109.46314 * 209.99587 * 27 26 25 46 46 H 1.09000 * 109.47299 * 329.99621 * 27 26 25 47 47 H 1.08992 * 109.47273 * 358.39247 * 28 26 25 48 48 H 1.09002 * 109.46863 * 118.39232 * 28 26 25 49 49 H 1.08996 * 109.47338 * 238.38636 * 28 26 25 50 50 H 1.07996 * 120.11660 * 180.29855 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7280 1.2463 5 6 1.6413 -2.2027 1.1736 6 1 0.5565 -2.2802 1.1029 7 7 2.1022 -2.8943 2.3801 8 6 1.4648 -4.0297 2.8041 9 1 0.6221 -4.4151 2.2494 10 6 1.9018 -4.6852 3.9470 11 7 2.9284 -4.2153 4.6233 12 14 1.0318 -6.2337 4.5258 13 1 1.6681 -7.4215 3.9018 14 1 1.1347 -6.3361 6.0037 15 1 -0.3987 -6.1743 4.1321 16 6 2.2799 -2.8465 -0.0600 17 6 1.7691 -2.1426 -1.3212 18 7 2.0225 -0.7011 -1.1936 19 6 2.6936 -0.0342 -2.1536 20 8 2.8707 1.1639 -2.0508 21 6 3.2143 -0.7602 -3.3318 22 6 2.5244 -1.8647 -3.8351 23 6 3.0121 -2.5402 -4.9350 24 6 4.1831 -2.1271 -5.5428 25 6 4.8773 -1.0288 -5.0495 26 7 6.0606 -0.6155 -5.6669 27 6 6.6373 -1.4123 -6.7526 28 6 6.7245 0.6146 -5.2285 29 6 4.3924 -0.3397 -3.9481 30 1 -0.3633 0.5094 0.8926 31 1 -0.3634 0.5183 -0.8874 32 1 -0.3634 -1.0277 -0.0051 33 1 3.1297 -0.6488 1.2920 34 1 1.6079 -0.2755 2.1372 35 1 2.8588 -2.5480 2.8785 36 1 3.2341 -4.6736 5.4218 37 1 2.0122 -3.9024 -0.0990 38 1 3.3638 -2.7475 -0.0020 39 1 0.6986 -2.3174 -1.4289 40 1 2.2943 -2.5301 -2.1941 41 1 1.6093 -2.1906 -3.3633 42 1 2.4766 -3.3942 -5.3230 43 1 4.5600 -2.6601 -6.4031 44 1 6.2350 -1.0716 -7.7067 45 1 7.7210 -1.2956 -6.7527 46 1 6.3850 -2.4626 -6.6062 47 1 6.1381 1.0819 -4.4375 48 1 7.7189 0.3762 -4.8511 49 1 6.8106 1.3010 -6.0709 50 1 4.9278 0.5170 -3.5662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044834513.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:48 Heat of formation + Delta-G solvation = 40.051418 kcal Electronic energy + Delta-G solvation = -28953.862930 eV Core-core repulsion = 25175.435102 eV Total energy + Delta-G solvation = -3778.427828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73449 -39.30085 -37.50242 -36.37678 -34.52205 -32.76892 -31.79402 -31.27214 -30.05825 -29.30899 -28.47915 -27.28009 -25.18928 -24.48292 -23.53609 -23.02152 -21.53453 -21.23550 -20.28396 -18.61953 -17.59608 -17.02483 -16.83766 -16.09717 -15.66581 -15.41047 -15.36263 -14.97305 -14.79660 -14.29309 -13.97912 -13.90600 -13.78610 -13.45965 -13.41136 -12.94260 -12.87941 -12.79203 -12.66141 -12.51347 -12.33813 -12.23447 -12.05539 -11.69954 -11.29343 -11.23602 -11.05972 -10.91374 -10.82877 -10.70501 -10.41665 -10.19599 -10.00182 -9.76671 -9.59494 -9.55308 -9.06198 -8.87065 -8.41832 -7.49825 -6.95576 -5.76766 -3.05632 0.91513 1.38428 2.76969 2.93226 3.14675 3.42560 3.47669 3.49512 3.78762 4.46174 4.58134 4.61063 4.71408 4.91264 4.98252 5.02629 5.07023 5.17223 5.24512 5.25718 5.28821 5.30036 5.36161 5.40086 5.47991 5.49896 5.51876 5.61143 5.71014 5.74383 5.81333 5.86580 5.94204 6.01150 6.11203 6.22101 6.25941 6.33162 6.34270 6.45007 6.49488 6.55113 6.58839 6.71983 6.94655 6.95884 7.09044 7.22042 7.58632 7.68820 8.28407 8.41564 9.52665 10.11002 10.45589 11.45869 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.002794 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.778231 B =10018.097705 C =10763.594334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.095 0.905 4 C -0.133 4.133 5 C 0.179 3.821 6 H 0.051 0.949 7 N -0.724 5.724 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.014 4.014 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.150 4.150 17 C 0.071 3.929 18 N -0.590 5.590 19 C 0.558 3.442 20 O -0.548 6.548 21 C -0.076 4.076 22 C -0.159 4.159 23 C -0.079 4.079 24 C -0.179 4.179 25 C 0.206 3.794 26 N -0.640 5.640 27 C 0.096 3.904 28 C 0.087 3.913 29 C -0.143 4.143 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.144 0.856 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.054 0.946 49 H 0.054 0.946 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 6.933 -23.327 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.113 0.887 4 C -0.172 4.172 5 C 0.068 3.932 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.369 4.369 9 H 0.088 0.912 10 C -0.210 4.210 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.218 1.218 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.192 4.192 17 C -0.051 4.051 18 N -0.321 5.321 19 C 0.347 3.653 20 O -0.427 6.427 21 C -0.080 4.080 22 C -0.179 4.179 23 C -0.097 4.097 24 C -0.201 4.201 25 C 0.105 3.895 26 N -0.352 5.352 27 C -0.047 4.047 28 C -0.056 4.056 29 C -0.166 4.166 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.162 0.838 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.099 0.901 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.312 7.480 -23.268 24.664 hybrid contribution -0.036 -0.954 0.562 1.108 sum 3.277 6.527 -22.706 23.851 Atomic orbital electron populations 1.22142 0.94992 1.02763 1.01915 1.21203 0.94055 0.97071 0.83867 0.88683 1.22213 1.01333 0.97313 0.96352 1.20219 0.96740 0.89123 0.87070 0.93147 1.42441 1.37973 1.29401 1.26632 1.19221 1.10151 1.01134 1.06370 0.91207 1.24744 0.98544 0.99476 0.98226 1.69663 1.27656 1.41264 1.19502 0.86217 0.78919 0.83405 0.77814 1.21767 1.21823 1.20778 1.22680 1.01220 1.00426 0.94827 1.22855 1.01149 0.79564 1.01507 1.48095 1.54386 1.09615 1.20035 1.18346 0.77800 0.86696 0.82507 1.90733 1.58965 1.14480 1.78514 1.19638 0.96088 0.96245 0.96015 1.21565 1.02279 0.96094 0.97987 1.20864 0.95201 0.99072 0.94597 1.20814 0.97495 0.98857 1.02961 1.17687 0.86554 0.93563 0.91712 1.46274 1.24261 1.26135 1.38549 1.21591 0.98284 0.95747 0.89125 1.21727 0.97449 0.85982 1.00401 1.20703 0.97574 1.01902 0.96434 0.91322 0.92862 0.91640 0.91904 0.90575 0.78323 0.93529 0.90731 0.92259 0.91361 0.87148 0.83824 0.85423 0.85832 0.93488 0.91560 0.91313 0.90103 0.92768 0.92722 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.02 37.16 0.34 -1.77 16 2 C 0.14 2.13 3.20 -67.60 -0.22 1.91 16 3 H 0.10 1.51 7.02 -51.93 -0.36 1.14 16 4 C -0.13 -2.27 5.02 -26.61 -0.13 -2.40 16 5 C 0.18 3.42 2.53 -67.86 -0.17 3.25 16 6 H 0.05 0.97 6.44 -51.93 -0.33 0.64 16 7 N -0.72 -17.82 5.12 -53.36 -0.27 -18.09 16 8 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 11 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 12 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C -0.15 -2.57 5.66 -26.58 -0.15 -2.72 16 17 C 0.07 0.97 4.48 -3.71 -0.02 0.95 16 18 N -0.59 -8.74 2.68 -166.32 -0.45 -9.19 16 19 C 0.56 8.83 7.45 -12.32 -0.09 8.73 16 20 O -0.55 -10.15 16.18 5.33 0.09 -10.07 16 21 C -0.08 -1.04 5.53 -104.99 -0.58 -1.62 16 22 C -0.16 -1.80 7.44 -39.16 -0.29 -2.09 16 23 C -0.08 -0.76 10.02 -39.67 -0.40 -1.16 16 24 C -0.18 -1.75 9.16 -39.30 -0.36 -2.11 16 25 C 0.21 2.28 6.53 -83.83 -0.55 1.74 16 26 N -0.64 -5.86 3.41 -187.59 -0.64 -6.50 16 27 C 0.10 0.61 10.09 59.85 0.60 1.21 16 28 C 0.09 0.68 10.62 59.85 0.64 1.31 16 29 C -0.14 -1.85 8.84 -38.97 -0.34 -2.19 16 30 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.87 5.72 -51.93 -0.30 0.57 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 36 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.83 7.47 -51.93 -0.39 0.44 16 40 H 0.11 1.34 3.55 -53.45 -0.19 1.15 16 41 H 0.14 1.45 5.30 -52.49 -0.28 1.17 16 42 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.12 0.94 6.29 -52.49 -0.33 0.61 16 44 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 46 H 0.07 0.40 6.45 -51.93 -0.34 0.07 16 47 H 0.08 0.69 5.33 -51.93 -0.28 0.41 16 48 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.13 1.71 5.68 -52.49 -0.30 1.41 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -32.78 384.96 -9.35 -42.13 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -7.60 Total: 10.17 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.97 Total: -4.04 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.63 Total: -61.11 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.78 -9.35 -42.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044834513.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.178 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds