Wall clock time and date at job start Sat Apr 11 2020 02:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.58762 * 2 1 4 4 C 1.53194 * 109.58515 * 120.28592 * 2 1 3 5 5 C 1.53037 * 109.31060 * 174.42241 * 4 2 1 6 6 C 1.53050 * 109.54035 * 298.63405 * 5 4 2 7 7 H 1.08993 * 109.50065 * 181.34930 * 6 5 4 8 8 N 1.46504 * 109.49376 * 301.41423 * 6 5 4 9 9 C 1.34770 * 119.99616 * 204.99716 * 8 6 5 10 10 O 1.21596 * 120.00552 * 0.02562 * 9 8 6 11 11 C 1.47440 * 119.99802 * 180.02562 * 9 8 6 12 12 C 1.39737 * 120.20518 * 0.25211 * 11 9 8 13 13 C 1.37750 * 119.92059 * 180.25428 * 12 11 9 14 14 C 1.38603 * 120.35583 * 359.74738 * 13 12 11 15 15 C 1.37959 * 120.42279 * 359.97438 * 14 13 12 16 16 C 1.38950 * 120.06409 * 0.02562 * 15 14 13 17 17 N 1.38872 * 120.17631 * 179.97438 * 16 15 14 18 18 C 1.46905 * 110.99967 * 299.99378 * 17 16 15 19 19 C 1.46899 * 111.00435 * 63.94989 * 17 16 15 20 20 C 1.53191 * 109.30974 * 61.36150 * 6 5 4 21 21 N 1.46924 * 108.77795 * 305.36892 * 20 6 5 22 22 C 1.36938 * 120.62851 * 233.58389 * 21 20 6 23 23 H 1.08002 * 119.99691 * 150.86922 * 22 21 20 24 24 C 1.38809 * 120.00349 * 330.87456 * 22 21 20 25 25 N 1.31628 * 119.99820 * 343.81324 * 24 22 21 26 26 Si 1.86801 * 120.00364 * 163.81451 * 24 22 21 27 27 H 1.48498 * 109.47395 * 94.30493 * 26 24 22 28 28 H 1.48499 * 109.46890 * 214.30974 * 26 24 22 29 29 H 1.48506 * 109.46891 * 334.30644 * 26 24 22 30 30 H 1.08997 * 109.47475 * 299.71616 * 1 2 3 31 31 H 1.09003 * 109.47474 * 59.71656 * 1 2 3 32 32 H 1.09003 * 109.47224 * 179.71568 * 1 2 3 33 33 H 1.08999 * 109.49720 * 54.46771 * 4 2 1 34 34 H 1.09001 * 109.49797 * 294.37214 * 4 2 1 35 35 H 1.08997 * 109.46058 * 178.61334 * 5 4 2 36 36 H 1.09000 * 109.45306 * 58.64563 * 5 4 2 37 37 H 0.96998 * 119.99888 * 24.99777 * 8 6 5 38 38 H 1.07992 * 120.03963 * 0.02562 * 12 11 9 39 39 H 1.08006 * 119.82273 * 179.72646 * 13 12 11 40 40 H 1.08000 * 119.79104 * 180.02562 * 14 13 12 41 41 H 1.07999 * 119.96690 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47178 * 183.95741 * 18 17 16 43 43 H 1.08999 * 109.46568 * 63.95670 * 18 17 16 44 44 H 1.09005 * 109.46982 * 303.95678 * 18 17 16 45 45 H 1.09006 * 109.46822 * 300.00101 * 19 17 16 46 46 H 1.08999 * 109.47131 * 60.00096 * 19 17 16 47 47 H 1.09003 * 109.47276 * 180.02562 * 19 17 16 48 48 H 1.09000 * 109.58703 * 65.16025 * 20 6 5 49 49 H 1.08999 * 109.58709 * 185.57795 * 20 6 5 50 50 H 0.96996 * 119.99581 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 1.2463 5 6 3.5674 -0.8466 1.1712 6 6 3.9569 -1.6658 -0.0615 7 1 5.0411 -1.7702 -0.1013 8 7 3.3405 -2.9925 0.0185 9 6 3.8970 -4.0343 -0.6306 10 8 4.9110 -3.8733 -1.2822 11 6 3.2764 -5.3693 -0.5506 12 6 2.1082 -5.5581 0.1926 13 6 1.5363 -6.8090 0.2676 14 6 2.1103 -7.8826 -0.3950 15 6 3.2603 -7.7113 -1.1375 16 6 3.8520 -6.4571 -1.2252 17 7 5.0099 -6.2822 -1.9715 18 6 6.0992 -7.1237 -1.4583 19 6 4.7643 -6.5493 -3.3950 20 6 3.4649 -0.9486 -1.3226 21 7 2.0225 -0.7011 -1.1936 22 6 1.1537 -1.1154 -2.1676 23 1 0.1364 -1.3714 -1.9105 24 6 1.5804 -1.2064 -3.4854 25 7 2.6907 -0.6073 -3.8604 26 14 0.5788 -2.1791 -4.7264 27 1 -0.3434 -1.2635 -5.4450 28 1 1.4928 -2.8266 -5.7014 29 1 -0.2091 -3.2206 -4.0194 30 1 -0.3634 0.5094 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3634 -1.0277 -0.0051 33 1 1.6029 -1.7237 1.2935 34 1 1.7660 -0.1642 2.1371 35 1 3.9377 -1.3423 2.0685 36 1 4.0059 0.1487 1.0990 37 1 2.5319 -3.1210 0.5385 38 1 1.6565 -4.7251 0.7106 39 1 0.6358 -6.9540 0.8462 40 1 1.6539 -8.8593 -0.3302 41 1 3.7011 -8.5528 -1.6512 42 1 7.0126 -6.9157 -2.0157 43 1 5.8330 -8.1741 -1.5759 44 1 6.2602 -6.9056 -0.4025 45 1 4.4211 -7.5766 -3.5179 46 1 4.0020 -5.8647 -3.7669 47 1 5.6875 -6.4054 -3.9563 48 1 3.9902 0.0002 -1.4318 49 1 3.6517 -1.5744 -2.1952 50 1 2.9887 -0.6706 -4.7813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072116597.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:56 Heat of formation + Delta-G solvation = 36.967135 kcal Electronic energy + Delta-G solvation = -30571.928278 eV Core-core repulsion = 26793.366705 eV Total energy + Delta-G solvation = -3778.561573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.22930 -38.78508 -37.13613 -36.44278 -33.91467 -32.64866 -31.59619 -30.04429 -29.82093 -29.68968 -27.46338 -26.17915 -24.98183 -24.45587 -23.52472 -22.10087 -21.21513 -20.40369 -20.10415 -18.58684 -17.72812 -16.43713 -16.12966 -15.68128 -15.29664 -15.00026 -14.69492 -14.60587 -14.27963 -14.06075 -13.79757 -13.72866 -13.51549 -13.24316 -12.87697 -12.76064 -12.46092 -12.39327 -12.24087 -12.02688 -11.77091 -11.70816 -11.56287 -11.20653 -11.11059 -11.08377 -10.89101 -10.80304 -10.64064 -10.32868 -10.26702 -9.90338 -9.44992 -9.37708 -9.13835 -8.90481 -8.63133 -8.37406 -8.13984 -8.06564 -6.51801 -5.67700 -3.10712 1.05376 1.31592 3.34524 3.41697 3.49533 3.50429 3.87586 3.97411 4.23622 4.56428 4.84893 4.90094 5.06499 5.25506 5.30680 5.36829 5.38943 5.43022 5.45223 5.54126 5.58175 5.61373 5.64166 5.67179 5.73008 5.88536 5.93103 6.08181 6.10592 6.18242 6.21835 6.26786 6.38090 6.39658 6.42814 6.44139 6.50901 6.61588 6.68249 6.77982 6.79721 7.00791 7.06831 7.10599 7.20864 7.51900 7.55705 7.79833 7.91369 8.33424 8.56884 9.08758 9.31165 9.96188 10.52295 11.40195 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.010616 B = 0.005157 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.775681 B = 5427.905967 C = 6159.613375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.122 3.878 7 H 0.075 0.925 8 N -0.703 5.703 9 C 0.551 3.449 10 O -0.504 6.504 11 C -0.101 4.101 12 C -0.081 4.081 13 C -0.131 4.131 14 C -0.095 4.095 15 C -0.163 4.163 16 C 0.143 3.857 17 N -0.488 5.488 18 C 0.036 3.964 19 C 0.036 3.964 20 C 0.163 3.837 21 N -0.581 5.581 22 C -0.248 4.248 23 H 0.066 0.934 24 C 0.007 3.993 25 N -0.897 5.897 26 Si 0.892 3.108 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.390 0.610 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.072 0.928 43 H 0.022 0.978 44 H 0.066 0.934 45 H 0.023 0.977 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.023 0.977 49 H 0.096 0.904 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 -12.088 10.372 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.016 3.984 7 H 0.093 0.907 8 N -0.355 5.355 9 C 0.336 3.664 10 O -0.379 6.379 11 C -0.105 4.105 12 C -0.100 4.100 13 C -0.150 4.150 14 C -0.114 4.114 15 C -0.184 4.184 16 C 0.048 3.952 17 N -0.208 5.208 18 C -0.111 4.111 19 C -0.111 4.111 20 C 0.036 3.964 21 N -0.305 5.305 22 C -0.378 4.378 23 H 0.084 0.916 24 C -0.192 4.192 25 N -0.541 5.541 26 Si 0.722 3.278 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.225 0.775 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.091 0.909 43 H 0.041 0.959 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.041 0.959 49 H 0.114 0.886 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.874 -11.430 9.733 15.130 hybrid contribution -1.248 -1.396 -0.645 1.980 sum 0.625 -12.826 9.089 15.732 Atomic orbital electron populations 1.21795 0.96230 1.01186 1.00074 1.20447 0.92792 0.93610 0.87291 0.95868 1.22062 0.95272 1.00542 0.99031 1.21692 0.96896 1.00121 0.96966 1.21702 0.96909 0.81881 0.97888 0.90746 1.45804 1.29395 1.08488 1.51822 1.17832 0.84704 0.83542 0.80314 1.90806 1.23860 1.84293 1.38943 1.20228 0.96313 0.94374 0.99550 1.21347 0.94046 0.97517 0.97080 1.21059 1.00415 0.92683 1.00797 1.21090 0.95197 0.98858 0.96260 1.21638 0.97670 0.97470 1.01601 1.18743 0.91295 0.91155 0.94038 1.59170 1.04206 1.55137 1.02270 1.22376 0.94161 0.93365 1.01151 1.22387 1.02700 0.98767 0.87196 1.21170 0.83591 0.96929 0.94686 1.44028 1.02762 1.64643 1.19031 1.19035 0.94635 1.37940 0.86165 0.91623 1.25011 0.97713 0.99550 0.96879 1.69998 1.23898 1.43607 1.16601 0.86444 0.79410 0.80174 0.81728 1.21653 1.21672 1.20606 0.94504 0.92111 0.92986 0.92826 0.92985 0.93134 0.91237 0.77487 0.85365 0.85618 0.86034 0.86087 0.90895 0.95927 0.91535 0.95893 0.90962 0.90848 0.95933 0.88556 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.94 37.16 0.30 -2.16 16 2 C 0.17 3.27 3.50 -67.60 -0.24 3.04 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -2.08 5.21 -26.61 -0.14 -2.22 16 5 C -0.12 -1.91 5.59 -26.69 -0.15 -2.06 16 6 C 0.12 2.38 2.81 -67.80 -0.19 2.19 16 7 H 0.07 1.51 7.57 -51.93 -0.39 1.11 16 8 N -0.70 -13.06 4.87 -54.76 -0.27 -13.32 16 9 C 0.55 11.06 7.73 -12.52 -0.10 10.96 16 10 O -0.50 -11.73 14.69 5.28 0.08 -11.65 16 11 C -0.10 -1.73 5.89 -104.80 -0.62 -2.34 16 12 C -0.08 -1.14 9.53 -39.20 -0.37 -1.51 16 13 C -0.13 -1.55 10.02 -39.63 -0.40 -1.95 16 14 C -0.10 -1.08 10.03 -39.55 -0.40 -1.48 16 15 C -0.16 -2.11 8.59 -39.42 -0.34 -2.45 16 16 C 0.14 2.29 4.71 -83.62 -0.39 1.90 16 17 N -0.49 -7.96 2.92 -186.63 -0.54 -8.50 16 18 C 0.04 0.47 9.27 60.07 0.56 1.02 16 19 C 0.04 0.54 9.38 60.06 0.56 1.10 16 20 C 0.16 3.94 4.89 -3.71 -0.02 3.92 16 21 N -0.58 -13.90 2.91 -164.78 -0.48 -14.38 16 22 C -0.25 -6.59 8.60 -15.06 -0.13 -6.72 16 23 H 0.07 1.71 6.21 -52.49 -0.33 1.38 16 24 C 0.01 0.21 4.93 -17.43 -0.09 0.12 16 25 N -0.90 -26.65 11.22 55.49 0.62 -26.03 16 26 Si 0.89 22.36 29.58 -169.99 -5.03 17.33 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 32 H 0.05 0.95 7.40 -51.93 -0.38 0.56 16 33 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.39 6.48 4.80 -40.82 -0.20 6.29 16 38 H 0.13 1.63 6.40 -52.49 -0.34 1.29 16 39 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 1.34 7.04 -52.49 -0.37 0.97 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.02 0.24 7.25 -51.93 -0.38 -0.13 16 44 H 0.07 0.87 8.12 -51.93 -0.42 0.44 16 45 H 0.02 0.29 7.33 -51.93 -0.38 -0.10 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.10 2.76 6.11 -51.93 -0.32 2.44 16 50 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -32.34 386.12 -9.96 -42.30 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -8.02 Total: 7.08 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.15 Total: 1.36 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.67 Total: -62.23 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.34 -9.96 -42.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072116597.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.269 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds