Wall clock time and date at job start Sat Apr 11 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47190 * 2 1 4 4 N 1.46500 * 109.47089 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00255 * 254.17242 * 4 3 2 6 6 O 1.21515 * 119.99976 * 183.27253 * 5 4 3 7 7 C 1.48154 * 120.00012 * 3.27810 * 5 4 3 8 8 C 1.39820 * 120.91992 * 26.77992 * 7 5 4 9 9 C 1.38147 * 118.99745 * 179.75774 * 8 7 5 10 10 C 1.50699 * 119.54893 * 180.27307 * 9 8 7 11 11 N 1.31814 * 120.89952 * 0.53120 * 9 8 7 12 12 C 1.31811 * 122.04283 * 359.73910 * 11 9 8 13 13 C 1.50704 * 119.54854 * 180.02562 * 12 11 9 14 14 C 1.38144 * 120.90032 * 359.97438 * 12 11 9 15 15 C 1.46501 * 120.00034 * 74.17607 * 4 3 2 16 16 H 1.09001 * 110.64185 * 8.98185 * 15 4 3 17 17 C 1.55159 * 110.72059 * 245.84345 * 15 4 3 18 18 C 1.54912 * 101.57964 * 276.95733 * 17 15 4 19 19 N 1.47423 * 104.83247 * 322.98982 * 18 17 15 20 20 C 1.36936 * 125.64808 * 204.08749 * 19 18 17 21 21 H 1.07998 * 120.00021 * 5.36079 * 20 19 18 22 22 C 1.38811 * 119.99894 * 185.35386 * 20 19 18 23 23 N 1.31621 * 120.00137 * 5.57742 * 22 20 19 24 24 Si 1.86804 * 119.99840 * 185.58101 * 22 20 19 25 25 H 1.48499 * 109.47363 * 84.99921 * 24 22 20 26 26 H 1.48497 * 109.47029 * 204.99797 * 24 22 20 27 27 H 1.48494 * 109.46931 * 324.99581 * 24 22 20 28 28 C 1.47024 * 108.70214 * 24.13196 * 19 18 17 29 29 H 1.08995 * 109.47323 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46825 * 300.00199 * 1 2 3 31 31 H 1.09006 * 109.47103 * 59.99588 * 1 2 3 32 32 H 1.09010 * 109.46795 * 240.00418 * 2 1 3 33 33 H 1.08994 * 109.47463 * 120.00513 * 2 1 3 34 34 H 1.09001 * 109.47147 * 60.00641 * 3 2 1 35 35 H 1.08997 * 109.47364 * 300.00055 * 3 2 1 36 36 H 1.08003 * 120.49851 * 0.02562 * 8 7 5 37 37 H 1.09001 * 109.47412 * 270.25362 * 10 9 8 38 38 H 1.09002 * 109.47792 * 30.25667 * 10 9 8 39 39 H 1.09004 * 109.47249 * 150.25973 * 10 9 8 40 40 H 1.08999 * 109.47236 * 269.98090 * 13 12 11 41 41 H 1.09003 * 109.47061 * 29.97596 * 13 12 11 42 42 H 1.08995 * 109.47075 * 149.97827 * 13 12 11 43 43 H 1.08004 * 120.50067 * 179.97438 * 14 12 11 44 44 H 1.09000 * 111.00407 * 158.88617 * 17 15 4 45 45 H 1.08997 * 111.03683 * 35.04670 * 17 15 4 46 46 H 1.08997 * 110.36455 * 81.82709 * 18 17 15 47 47 H 1.08997 * 110.36316 * 204.15267 * 18 17 15 48 48 H 0.97006 * 119.99537 * 179.97438 * 23 22 20 49 49 H 1.09009 * 109.87863 * 239.51835 * 28 19 18 50 50 H 1.08998 * 110.01438 * 118.43002 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1794 1.7606 1.1220 6 8 5.3931 1.8186 1.1059 7 6 3.4410 2.0395 2.3758 8 6 2.1829 1.4759 2.6093 9 6 1.5318 1.7588 3.7944 10 6 0.1780 1.1531 4.0615 11 7 2.0763 2.5553 4.6925 12 6 3.2574 3.1113 4.5097 13 6 3.8272 4.0128 5.5745 14 6 3.9804 2.8781 3.3559 15 6 4.2370 1.0967 -1.2216 16 1 3.5562 1.0219 -2.0696 17 6 5.0259 -0.2260 -1.0328 18 6 6.3117 0.2764 -0.3300 19 7 6.6011 1.5783 -0.9583 20 6 7.8304 2.1782 -1.0215 21 1 8.7055 1.6554 -0.6647 22 6 7.9519 3.4584 -1.5441 23 7 6.8751 4.1382 -1.8772 24 14 9.6435 4.2164 -1.7750 25 1 10.2058 3.7842 -3.0797 26 1 9.5301 5.6968 -1.7510 27 1 10.5394 3.7708 -0.6778 28 6 5.3511 2.1262 -1.5050 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 1.7290 0.8258 1.8760 37 1 -0.5985 1.8166 3.6808 38 1 0.1072 0.1868 3.5621 39 1 0.0460 1.0177 5.1350 40 1 3.5148 5.0400 5.3863 41 1 3.4634 3.6958 6.5519 42 1 4.9155 3.9547 5.5555 43 1 4.9474 3.3374 3.2127 44 1 5.2593 -0.6824 -1.9947 45 1 4.4783 -0.9206 -0.3958 46 1 6.1357 0.4017 0.7384 47 1 7.1337 -0.4185 -0.5011 48 1 6.9601 5.0330 -2.2421 49 1 5.4515 2.2774 -2.5799 50 1 5.1142 3.0722 -1.0183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481401310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:37 Heat of formation + Delta-G solvation = 58.102496 kcal Electronic energy + Delta-G solvation = -30435.218668 eV Core-core repulsion = 26657.573593 eV Total energy + Delta-G solvation = -3777.645075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.21001 -40.79530 -38.02563 -37.58085 -34.81499 -34.50834 -33.69004 -33.23574 -30.68154 -29.97742 -29.23610 -27.80949 -27.06222 -26.47705 -24.99563 -23.02029 -22.51337 -22.19444 -21.86847 -19.73247 -18.82831 -18.27792 -17.97691 -17.40073 -17.07582 -16.51163 -16.30314 -15.99933 -15.66882 -15.62605 -15.23696 -14.88050 -14.55954 -14.12087 -14.07699 -13.95318 -13.88240 -13.68052 -13.43318 -13.28319 -12.99218 -12.94338 -12.85341 -12.83473 -12.75873 -12.71551 -12.55258 -12.27953 -12.00931 -11.94604 -11.81061 -11.69533 -11.58487 -11.52671 -10.92599 -10.75476 -10.62724 -10.22843 -9.73177 -9.47461 -8.58439 -7.77467 -5.06232 -0.24270 0.02219 1.40490 1.43806 1.51458 1.85268 2.00781 2.52761 2.72470 3.20221 3.32078 3.39339 3.68079 3.79519 3.84899 3.92003 3.98519 4.03307 4.13452 4.18180 4.29712 4.37540 4.41064 4.47998 4.56254 4.63323 4.69137 4.71726 4.72786 4.75216 4.86177 4.87022 4.99914 5.03120 5.04629 5.07013 5.09254 5.14359 5.23759 5.26422 5.28967 5.35971 5.47325 5.55338 5.58405 5.68266 5.73927 5.96614 6.28237 6.49827 6.91639 7.18945 7.36425 7.90719 8.56996 9.32799 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.004422 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.206970 B = 6330.233186 C = 7964.815041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.077 3.923 4 N -0.590 5.590 5 C 0.513 3.487 6 O -0.502 6.502 7 C -0.082 4.082 8 C -0.169 4.169 9 C 0.123 3.877 10 C -0.100 4.100 11 N -0.488 5.488 12 C 0.125 3.875 13 C -0.101 4.101 14 C -0.151 4.151 15 C 0.132 3.868 16 H 0.120 0.880 17 C -0.124 4.124 18 C 0.118 3.882 19 N -0.597 5.597 20 C -0.222 4.222 21 H 0.068 0.932 22 C -0.072 4.072 23 N -0.953 5.953 24 Si 0.973 3.027 25 H -0.283 1.283 26 H -0.295 1.295 27 H -0.277 1.277 28 C 0.192 3.808 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.188 0.812 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.050 0.950 47 H 0.013 0.987 48 H 0.241 0.759 49 H -0.001 1.001 50 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.302 -8.926 9.579 24.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C -0.044 4.044 4 N -0.323 5.323 5 C 0.301 3.699 6 O -0.377 6.377 7 C -0.093 4.093 8 C -0.188 4.188 9 C -0.015 4.015 10 C -0.157 4.157 11 N -0.200 5.200 12 C -0.012 4.012 13 C -0.158 4.158 14 C -0.172 4.172 15 C 0.028 3.972 16 H 0.138 0.862 17 C -0.163 4.163 18 C -0.007 4.007 19 N -0.322 5.322 20 C -0.352 4.352 21 H 0.086 0.914 22 C -0.264 4.264 23 N -0.604 5.604 24 Si 0.802 3.198 25 H -0.210 1.210 26 H -0.222 1.222 27 H -0.202 1.202 28 C 0.066 3.934 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.204 0.796 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.138 0.862 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.031 0.969 48 H 0.050 0.950 49 H 0.017 0.983 50 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -19.990 -8.549 10.258 24.040 hybrid contribution 2.164 0.904 -1.188 2.629 sum -17.825 -7.645 9.070 21.412 Atomic orbital electron populations 1.21750 0.92746 1.03150 1.03033 1.22010 0.97937 0.94997 1.03129 1.22635 0.77640 0.99227 1.04924 1.47763 1.07358 1.67889 1.09251 1.18742 0.87437 0.79621 0.84112 1.90992 1.14251 1.47481 1.84998 1.20519 0.95851 0.98314 0.94591 1.23245 0.93502 1.02274 0.99786 1.21956 0.98116 0.92732 0.88716 1.20866 0.89122 1.01472 1.04270 1.67327 1.11118 1.08998 1.32557 1.21528 0.90025 0.95583 0.94053 1.20780 1.01007 0.97861 0.96129 1.22074 1.01294 0.99290 0.94555 1.22269 0.93613 0.94792 0.86512 0.86226 1.23107 0.95787 0.96082 1.01315 1.22268 0.94940 0.85946 0.97529 1.44386 1.04089 1.19350 1.64334 1.19353 0.85369 0.97344 1.33109 0.91419 1.25503 1.00563 0.97010 1.03296 1.70182 1.27647 1.11451 1.51093 0.85161 0.79736 0.76936 0.77972 1.20965 1.22179 1.20228 1.21001 0.84645 0.93681 0.94054 0.91069 0.91242 0.91993 0.90764 0.91324 0.87956 0.89906 0.79561 0.88496 0.88162 0.90115 0.89268 0.89184 0.90187 0.86229 0.89905 0.89248 0.93280 0.96915 0.94993 0.98262 0.96915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.86 71.98 0.71 -0.64 16 2 C -0.14 -2.09 5.18 30.59 0.16 -1.94 16 3 C 0.08 1.64 4.83 86.38 0.42 2.06 16 4 N -0.59 -19.20 2.54 -794.29 -2.02 -21.22 16 5 C 0.51 20.15 6.73 86.88 0.58 20.74 16 6 O -0.50 -25.29 9.99 -3.76 -0.04 -25.33 16 7 C -0.08 -2.67 5.54 -19.88 -0.11 -2.78 16 8 C -0.17 -3.97 7.18 22.63 0.16 -3.81 16 9 C 0.12 2.66 6.78 42.54 0.29 2.95 16 10 C -0.10 -1.20 10.16 71.24 0.72 -0.48 16 11 N -0.49 -12.66 10.16 -172.23 -1.75 -14.41 16 12 C 0.13 3.48 6.78 42.54 0.29 3.77 16 13 C -0.10 -2.13 10.17 71.24 0.72 -1.40 16 14 C -0.15 -5.06 9.32 22.63 0.21 -4.85 16 15 C 0.13 4.83 3.50 46.18 0.16 4.99 16 16 H 0.12 3.55 7.99 -2.39 -0.02 3.53 16 17 C -0.12 -4.33 6.64 31.99 0.21 -4.11 16 18 C 0.12 5.52 6.23 86.86 0.54 6.06 16 19 N -0.60 -33.74 2.38 -691.99 -1.65 -35.39 16 20 C -0.22 -13.79 10.27 84.03 0.86 -12.92 16 21 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 22 C -0.07 -4.44 5.46 84.86 0.46 -3.98 16 23 N -0.95 -61.57 10.42 21.65 0.23 -61.34 16 24 Si 0.97 49.80 29.56 68.60 2.03 51.83 16 25 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 26 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 27 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 28 C 0.19 10.08 4.20 86.73 0.36 10.44 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.47 8.01 -2.39 -0.02 0.45 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.07 1.14 8.06 -2.38 -0.02 1.12 16 33 H 0.07 1.04 6.85 -2.39 -0.02 1.02 16 34 H 0.10 2.11 4.18 -2.39 -0.01 2.10 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.19 3.32 2.62 -2.91 -0.01 3.32 16 37 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 0.72 8.08 -2.39 -0.02 0.70 16 39 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 1.63 8.07 -2.39 -0.02 1.61 16 43 H 0.12 4.50 7.96 -2.91 -0.02 4.47 16 44 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 46 H 0.05 2.52 4.94 -60.22 -0.30 2.22 16 47 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.24 15.15 8.31 -92.70 -0.77 14.38 16 49 H 0.00 -0.03 7.82 -2.38 -0.02 -0.05 16 50 H 0.01 0.78 6.50 -2.39 -0.02 0.77 16 Total: -1.00 -83.29 383.85 4.21 -79.07 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.65 Total: 12.69 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 6.76 Total: 14.09 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -5.19 Total: -132.35 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.04 Total: -25.33 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.03 Total: 51.83 kcal Total: -83.29 4.21 -79.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481401310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.177 kcal (2) G-P(sol) polarization free energy of solvation -83.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds