Wall clock time and date at job start Sat Apr 11 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.48845 * 2 1 4 4 C 1.53051 * 109.50894 * 239.94366 * 2 1 3 5 5 N 1.46946 * 109.36366 * 181.62030 * 4 2 1 6 6 C 1.46908 * 110.99961 * 183.18781 * 5 4 2 7 7 C 1.46961 * 110.88426 * 59.32350 * 5 4 2 8 8 C 1.53051 * 109.36058 * 300.67832 * 7 5 4 9 9 N 1.46955 * 109.48694 * 120.04158 * 2 1 3 10 10 C 1.46900 * 111.00309 * 303.17589 * 9 2 1 11 11 C 1.50699 * 109.47401 * 180.76537 * 10 9 2 12 12 O 1.21287 * 120.00002 * 353.60212 * 11 10 9 13 13 N 1.34776 * 119.99913 * 173.59785 * 11 10 9 14 14 C 1.46503 * 120.00011 * 186.15285 * 13 11 10 15 15 C 1.50700 * 109.46524 * 90.00405 * 14 13 11 16 16 H 1.08003 * 120.00289 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99918 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99937 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00109 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46778 * 90.00191 * 19 17 15 21 21 H 1.48503 * 109.46971 * 209.99828 * 19 17 15 22 22 H 1.48493 * 109.47263 * 330.00129 * 19 17 15 23 23 C 1.39927 * 120.00247 * 6.16215 * 13 11 10 24 24 C 1.38873 * 120.06775 * 277.06617 * 23 13 11 25 25 C 1.38105 * 119.92665 * 179.78946 * 24 23 13 26 26 C 1.38285 * 120.07526 * 0.48535 * 25 24 23 27 27 C 1.38282 * 120.13713 * 359.74346 * 26 25 24 28 28 C 1.38111 * 120.07246 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47284 * 300.00047 * 1 2 3 30 30 H 1.09000 * 109.47227 * 60.00288 * 1 2 3 31 31 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.48450 * 301.58885 * 4 2 1 33 33 H 1.09002 * 109.48676 * 61.65137 * 4 2 1 34 34 H 1.08995 * 109.46861 * 292.24839 * 6 5 4 35 35 H 1.08998 * 109.46837 * 52.24856 * 6 5 4 36 36 H 1.09003 * 109.46907 * 172.24835 * 6 5 4 37 37 H 1.08998 * 109.48725 * 180.71114 * 7 5 4 38 38 H 1.09000 * 109.48800 * 60.64351 * 7 5 4 39 39 H 1.09009 * 109.48881 * 298.43246 * 8 7 5 40 40 H 1.08999 * 109.50758 * 178.37663 * 8 7 5 41 41 H 1.08997 * 109.47357 * 300.76821 * 10 9 2 42 42 H 1.09001 * 109.46898 * 60.76439 * 10 9 2 43 43 H 1.08992 * 109.47488 * 210.00361 * 14 13 11 44 44 H 1.09004 * 109.47049 * 330.00812 * 14 13 11 45 45 H 0.96993 * 120.00424 * 179.97438 * 18 17 15 46 46 H 1.08000 * 120.03290 * 0.02562 * 24 23 13 47 47 H 1.08006 * 119.96392 * 180.23181 * 25 24 23 48 48 H 1.07993 * 119.93465 * 179.76917 * 26 25 24 49 49 H 1.08000 * 119.96539 * 180.02562 * 27 26 25 50 50 H 1.07995 * 120.03780 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0411 -0.7226 -1.2487 5 7 3.5101 -0.7547 -1.2260 6 6 4.0420 -1.3746 -2.4470 7 6 4.0004 -1.4483 -0.0267 8 6 3.4893 -0.7258 1.2220 9 7 2.0203 -0.6936 1.1993 10 6 1.4884 -0.0737 2.4203 11 6 2.0266 -0.7984 3.6270 12 8 2.6843 -1.8076 3.4850 13 7 1.7772 -0.3251 4.8640 14 6 2.4101 -0.9494 6.0286 15 6 3.7266 -0.2714 6.3083 16 1 4.0589 0.5427 5.6811 17 6 4.5075 -0.6911 7.3643 18 7 4.1037 -1.6834 8.1271 19 14 6.1397 0.1487 7.7106 20 1 5.9243 1.2834 8.6441 21 1 7.0774 -0.8258 8.3241 22 1 6.7149 0.6561 6.4391 23 6 0.9137 0.7624 5.0362 24 6 1.3862 2.0583 4.8752 25 6 0.5303 3.1293 5.0415 26 6 -0.7935 2.9129 5.3778 27 6 -1.2658 1.6238 5.5435 28 6 -0.4162 0.5483 5.3740 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6552 -1.7419 -1.2625 33 1 1.7027 -0.1931 -2.1393 34 1 3.7859 -2.4340 -2.4579 35 1 3.6088 -0.8870 -3.3203 36 1 5.1261 -1.2626 -2.4687 37 1 5.0904 -1.4479 -0.0266 38 1 3.6368 -2.4759 -0.0267 39 1 3.8752 0.2936 1.2358 40 1 3.8277 -1.2549 2.1128 41 1 1.7927 0.9722 2.4590 42 1 0.4002 -0.1355 2.4148 43 1 1.7573 -0.8469 6.8954 44 1 2.5817 -2.0065 5.8257 45 1 4.6531 -1.9790 8.8698 46 1 2.4209 2.2282 4.6164 47 1 0.8962 4.1373 4.9127 48 1 -1.4598 3.7522 5.5110 49 1 -2.3003 1.4580 5.8058 50 1 -0.7858 -0.4582 5.5031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330672425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:02:11 Heat of formation + Delta-G solvation = 22.949322 kcal Electronic energy + Delta-G solvation = -29718.865280 eV Core-core repulsion = 25939.695849 eV Total energy + Delta-G solvation = -3779.169431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -40.20937 -39.20133 -37.97443 -35.50611 -34.76076 -32.70942 -32.27008 -30.70422 -29.74543 -29.36432 -27.40480 -27.06654 -25.63255 -23.54541 -22.70275 -22.36586 -22.20542 -21.53929 -19.60129 -18.98310 -17.10833 -16.54574 -16.31607 -15.93716 -15.41894 -15.28763 -15.20475 -14.94105 -14.69684 -14.55585 -14.24709 -13.91034 -13.74504 -13.56267 -13.17437 -12.89032 -12.65104 -12.45833 -12.39850 -12.29556 -12.10786 -12.01355 -11.61597 -11.48239 -11.42604 -11.21424 -11.06514 -11.00309 -10.87984 -10.66229 -10.64061 -10.47758 -10.16598 -9.69565 -9.10742 -8.71794 -8.49451 -8.43433 -8.35331 -8.08174 -7.81446 -6.07879 -4.12713 1.53390 1.62370 3.24862 3.28313 3.34977 3.38937 3.58798 3.90143 3.98456 4.15137 4.41969 4.78186 4.92348 4.98122 5.11729 5.14862 5.17884 5.24790 5.27505 5.33539 5.34519 5.41649 5.48142 5.48717 5.54431 5.63756 5.65849 5.66931 5.73249 5.74336 5.80685 5.90494 5.96663 6.02839 6.06914 6.24361 6.25622 6.41204 6.57439 6.70094 6.84774 6.89357 6.96104 6.98592 7.17279 7.21203 7.29473 7.38615 7.48679 7.88010 8.16990 8.36717 8.83862 9.00416 9.52055 11.00497 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.009256 B = 0.004519 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.451604 B = 6194.106345 C = 8307.187239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.082 3.918 3 H 0.047 0.953 4 C 0.065 3.935 5 N -0.549 5.549 6 C 0.026 3.974 7 C 0.062 3.938 8 C 0.039 3.961 9 N -0.516 5.516 10 C 0.037 3.963 11 C 0.517 3.483 12 O -0.514 6.514 13 N -0.566 5.566 14 C 0.250 3.750 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.157 3.843 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.129 4.129 27 C -0.115 4.115 28 C -0.122 4.122 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.025 0.975 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.032 0.968 40 H 0.121 0.879 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.033 0.967 44 H 0.050 0.950 45 H 0.264 0.736 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.121 0.879 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.287 6.905 -15.446 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 H 0.065 0.935 4 C -0.063 4.063 5 N -0.274 5.274 6 C -0.122 4.122 7 C -0.066 4.066 8 C -0.088 4.088 9 N -0.242 5.242 10 C -0.093 4.093 11 C 0.305 3.695 12 O -0.390 6.390 13 N -0.296 5.296 14 C 0.132 3.868 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.199 1.199 23 C 0.066 3.934 24 C -0.131 4.131 25 C -0.133 4.133 26 C -0.147 4.147 27 C -0.133 4.133 28 C -0.142 4.142 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.138 0.862 41 H 0.075 0.925 42 H 0.119 0.881 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.142 0.858 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.139 0.861 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.833 6.190 -15.352 18.762 hybrid contribution 0.951 0.566 0.460 1.199 sum -7.882 6.756 -14.892 18.153 Atomic orbital electron populations 1.21883 0.94155 1.02702 1.01830 1.21679 0.95080 0.96016 0.89900 0.93470 1.22158 0.87379 0.99613 0.97156 1.62200 1.08476 1.53974 1.02710 1.22326 1.00704 0.96904 0.92280 1.22156 0.99524 0.96153 0.88770 1.22631 0.86438 0.99767 0.99957 1.61922 1.09387 1.52688 1.00196 1.22054 1.01281 0.96665 0.89350 1.20190 0.80595 0.85122 0.83626 1.90579 1.39030 1.24466 1.84920 1.45917 1.44754 1.30590 1.08351 1.19399 0.92217 0.94670 0.80505 1.21361 1.03941 1.17888 1.13346 0.92497 1.24905 0.98157 0.94998 0.95820 1.69926 1.38332 1.26761 1.18128 0.86511 0.83393 0.79180 0.78452 1.20610 1.21027 1.19865 1.17709 0.89291 0.87619 0.98798 1.21498 0.99924 0.91881 0.99800 1.21014 0.93635 0.98491 1.00195 1.21083 0.95808 0.96805 1.01006 1.20966 0.99407 0.92383 1.00558 1.21416 0.92889 0.99554 1.00296 0.92115 0.92151 0.91688 0.93959 0.90643 0.95647 0.91706 0.91421 0.90450 0.93776 0.94952 0.86168 0.92489 0.88146 0.94919 0.93228 0.92649 0.85777 0.86157 0.86378 0.86113 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.86 37.16 0.33 -1.20 16 2 C 0.08 1.04 2.56 -67.65 -0.17 0.86 16 3 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.07 0.77 4.90 -3.77 -0.02 0.75 16 5 N -0.55 -6.96 4.97 -242.75 -1.21 -8.17 16 6 C 0.03 0.26 9.63 60.07 0.58 0.84 16 7 C 0.06 0.89 5.62 -3.76 -0.02 0.87 16 8 C 0.04 0.66 5.16 -3.76 -0.02 0.64 16 9 N -0.52 -8.12 4.41 -227.92 -1.01 -9.12 16 10 C 0.04 0.60 3.91 -4.98 -0.02 0.59 16 11 C 0.52 10.72 7.19 -10.99 -0.08 10.64 16 12 O -0.51 -12.45 13.34 5.55 0.07 -12.38 16 13 N -0.57 -12.06 2.48 -114.74 -0.28 -12.34 16 14 C 0.25 6.50 5.20 -5.19 -0.03 6.47 16 15 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 16 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 17 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 19 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.16 2.80 4.07 -83.69 -0.34 2.46 16 24 C -0.11 -1.81 9.14 -39.40 -0.36 -2.17 16 25 C -0.11 -1.51 10.04 -39.61 -0.40 -1.91 16 26 C -0.13 -1.54 10.04 -39.55 -0.40 -1.94 16 27 C -0.11 -1.45 10.04 -39.61 -0.40 -1.84 16 28 C -0.12 -1.88 9.97 -39.39 -0.39 -2.28 16 29 H 0.06 0.63 6.38 -51.93 -0.33 0.30 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 34 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.55 8.14 -51.92 -0.42 0.12 16 40 H 0.12 2.43 5.13 -51.93 -0.27 2.16 16 41 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 42 H 0.10 1.47 6.29 -51.93 -0.33 1.14 16 43 H 0.03 0.88 8.05 -51.93 -0.42 0.46 16 44 H 0.05 1.44 7.35 -51.93 -0.38 1.06 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 47 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 48 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 49 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 50 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 396.86 15.07 5.98 5.98 Total: -1.00 -31.65 396.86 -11.29 -42.94 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.41 Total: 2.56 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.16 Total: -0.54 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -1.76 Total: -55.26 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.07 Total: -12.38 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.65 -11.29 -42.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330672425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.887 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds