Wall clock time and date at job start Sat Apr 11 2020 02:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47765 * 2 1 4 4 C 1.53005 * 109.47052 * 240.00046 * 2 1 3 5 5 C 1.50701 * 109.47034 * 64.99906 * 4 2 1 6 6 O 1.21280 * 120.00005 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99978 * 179.72428 * 5 4 2 8 8 C 1.47847 * 122.22949 * 359.97438 * 7 5 4 9 9 C 1.52244 * 111.32580 * 232.42187 * 8 7 5 10 10 C 1.53873 * 111.58539 * 311.74256 * 9 8 7 11 11 C 1.51080 * 107.33824 * 56.77012 * 10 9 8 12 12 H 1.08994 * 108.30327 * 51.22683 * 11 10 9 13 13 C 1.45730 * 122.22610 * 180.27597 * 7 5 4 14 14 H 1.09005 * 111.06972 * 240.52644 * 13 7 5 15 15 C 1.53431 * 116.37305 * 9.03331 * 13 7 5 16 16 C 1.55473 * 101.67164 * 152.71612 * 15 13 7 17 17 N 1.45567 * 120.04565 * 175.88430 * 11 10 9 18 18 C 1.36934 * 126.06768 * 330.96424 * 17 11 10 19 19 H 1.08001 * 120.00358 * 6.83473 * 18 17 11 20 20 C 1.38815 * 119.99918 * 186.83154 * 18 17 11 21 21 N 1.31609 * 120.00394 * 8.12529 * 20 18 17 22 22 Si 1.86800 * 119.99792 * 188.12398 * 20 18 17 23 23 H 1.48498 * 109.47349 * 94.81060 * 22 20 18 24 24 H 1.48503 * 109.47297 * 214.81155 * 22 20 18 25 25 H 1.48503 * 109.47259 * 334.80515 * 22 20 18 26 26 N 1.46498 * 109.47527 * 120.00120 * 2 1 3 27 27 C 1.36344 * 125.63203 * 59.68923 * 26 2 1 28 28 C 1.34856 * 108.21640 * 179.83284 * 27 26 2 29 29 C 1.40891 * 107.41618 * 0.42448 * 28 27 26 30 30 C 1.34849 * 107.41961 * 359.73767 * 29 28 27 31 31 H 1.09001 * 109.46373 * 299.99664 * 1 2 3 32 32 H 1.08995 * 109.47008 * 59.99634 * 1 2 3 33 33 H 1.09002 * 109.46971 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47075 * 305.00067 * 4 2 1 35 35 H 1.08996 * 109.47344 * 185.00028 * 4 2 1 36 36 H 1.09006 * 109.15949 * 352.88777 * 8 7 5 37 37 H 1.08999 * 109.16520 * 112.06776 * 8 7 5 38 38 H 1.09005 * 109.16637 * 191.11928 * 9 8 7 39 39 H 1.09000 * 108.86065 * 72.16681 * 9 8 7 40 40 H 1.09001 * 109.88061 * 297.30658 * 10 9 8 41 41 H 1.09005 * 109.94514 * 176.26490 * 10 9 8 42 42 H 1.08992 * 110.98689 * 270.81263 * 15 13 7 43 43 H 1.09002 * 110.98578 * 34.58372 * 15 13 7 44 44 H 1.08994 * 109.95650 * 96.78476 * 16 15 13 45 45 H 1.08998 * 109.95845 * 218.02177 * 16 15 13 46 46 H 0.96998 * 120.00814 * 179.97438 * 21 20 18 47 47 H 1.07996 * 125.89410 * 359.96734 * 27 26 2 48 48 H 1.08004 * 126.29322 * 180.16538 * 28 27 26 49 49 H 1.08006 * 126.29131 * 179.73295 * 29 28 27 50 50 H 1.07996 * 125.89187 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0117 1.0874 -2.3633 7 7 1.9896 -0.3887 -3.6999 8 6 2.7625 -1.6339 -3.8948 9 6 3.9889 -1.3939 -4.7644 10 6 3.6347 -0.6053 -6.0374 11 6 2.9850 0.6868 -5.6004 12 1 3.6303 1.1616 -4.8614 13 6 1.6349 0.3280 -4.9182 14 1 1.0126 -0.2876 -5.5679 15 6 1.0304 1.7262 -4.7350 16 6 1.4426 2.4234 -6.0622 17 7 2.6183 1.6893 -6.5901 18 6 3.2394 1.9005 -7.7920 19 1 4.0118 1.2241 -8.1271 20 6 2.8763 2.9842 -8.5800 21 7 2.0539 3.8960 -8.1063 22 14 3.5549 3.1482 -10.3126 23 1 2.5885 2.5684 -11.2797 24 1 3.7686 4.5837 -10.6267 25 1 4.8471 2.4228 -10.4088 26 7 2.0184 -0.6906 1.1961 27 6 1.7559 -1.9868 1.5278 28 6 2.3800 -2.2588 2.6919 29 6 3.0443 -1.0847 3.0986 30 6 2.8056 -0.1417 2.1646 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.6053 -1.7198 -1.2952 35 1 3.1263 -0.7995 -1.2057 36 1 3.0828 -2.0118 -2.9238 37 1 2.1273 -2.3779 -4.3753 38 1 4.4195 -2.3541 -5.0487 39 1 4.7238 -0.8304 -4.1895 40 1 2.9402 -1.1813 -6.6490 41 1 4.5396 -0.3914 -6.6062 42 1 -0.0542 1.6735 -4.6422 43 1 1.4697 2.2318 -3.8750 44 1 0.6221 2.3752 -6.7781 45 1 1.7081 3.4628 -5.8695 46 1 1.8004 4.6534 -8.6567 47 1 1.1541 -2.6773 0.9557 48 1 2.3689 -3.2019 3.2181 49 1 3.6358 -0.9624 3.9939 50 1 3.1748 0.8731 2.1807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049853821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:45 Heat of formation + Delta-G solvation = 36.253681 kcal Electronic energy + Delta-G solvation = -29533.997458 eV Core-core repulsion = 25755.404948 eV Total energy + Delta-G solvation = -3778.592510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.21321 -41.58690 -39.43977 -36.96348 -35.99054 -34.25975 -33.88238 -31.32937 -30.43854 -29.78794 -29.55274 -28.86656 -26.39237 -25.83373 -23.76279 -22.87710 -22.38649 -21.51996 -21.27753 -20.46482 -19.75163 -18.74098 -18.24331 -17.26341 -17.02724 -16.86825 -16.55210 -15.91361 -15.66078 -15.62664 -15.31933 -15.16483 -14.74288 -14.52480 -14.39381 -14.23122 -13.96256 -13.70778 -13.56018 -13.39877 -13.17181 -13.08602 -12.90349 -12.89484 -12.75720 -12.71591 -12.38969 -12.29983 -12.13380 -12.05801 -11.93205 -11.77981 -11.69883 -11.52575 -11.44746 -10.80523 -10.32093 -9.54196 -9.47135 -8.98782 -8.90882 -7.86724 -5.23571 1.43314 1.44483 1.46392 1.55139 1.61113 1.75973 2.22861 2.23268 2.49287 3.30244 3.34299 3.47213 3.58016 3.78456 3.92569 3.99106 4.03845 4.08787 4.16114 4.23401 4.26130 4.34148 4.46071 4.47277 4.51468 4.55736 4.58281 4.67105 4.71349 4.76228 4.81859 4.89117 4.90421 4.97736 5.02399 5.09832 5.14238 5.24772 5.28729 5.42625 5.46125 5.47603 5.51560 5.56297 5.65131 5.69634 6.16682 6.17685 6.41960 6.51125 6.56688 7.03555 7.19134 7.74321 8.43512 9.25380 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.024889 B = 0.002699 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.704407 B =10371.617928 C =10890.799414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 H 0.091 0.909 4 C -0.135 4.135 5 C 0.517 3.483 6 O -0.565 6.565 7 N -0.599 5.599 8 C 0.104 3.896 9 C -0.121 4.121 10 C -0.112 4.112 11 C 0.150 3.850 12 H -0.005 1.005 13 C 0.135 3.865 14 H 0.081 0.919 15 C -0.111 4.111 16 C 0.181 3.819 17 N -0.612 5.612 18 C -0.234 4.234 19 H 0.088 0.912 20 C -0.070 4.070 21 N -0.953 5.953 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.298 1.298 25 H -0.264 1.264 26 N -0.443 5.443 27 C -0.016 4.016 28 C -0.222 4.222 29 C -0.219 4.219 30 C -0.031 4.031 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.006 0.994 45 H 0.013 0.987 46 H 0.246 0.754 47 H 0.180 0.820 48 H 0.144 0.856 49 H 0.141 0.859 50 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 -17.709 18.189 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.109 0.891 4 C -0.175 4.175 5 C 0.306 3.694 6 O -0.445 6.445 7 N -0.331 5.331 8 C -0.016 4.016 9 C -0.160 4.160 10 C -0.151 4.151 11 C 0.042 3.958 12 H 0.013 0.987 13 C 0.029 3.971 14 H 0.099 0.901 15 C -0.149 4.149 16 C 0.056 3.944 17 N -0.337 5.337 18 C -0.363 4.363 19 H 0.105 0.895 20 C -0.263 4.263 21 N -0.602 5.602 22 Si 0.806 3.194 23 H -0.214 1.214 24 H -0.225 1.225 25 H -0.188 1.188 26 N -0.118 5.118 27 C -0.145 4.145 28 C -0.246 4.246 29 C -0.244 4.244 30 C -0.161 4.161 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.146 0.854 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.024 0.976 45 H 0.031 0.969 46 H 0.055 0.945 47 H 0.197 0.803 48 H 0.162 0.838 49 H 0.158 0.842 50 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.365 -16.850 17.807 24.518 hybrid contribution 0.190 1.147 -1.245 1.703 sum 0.555 -15.703 16.563 22.830 Atomic orbital electron populations 1.22183 0.92809 1.03321 1.03315 1.20991 0.95928 0.96184 0.81910 0.89076 1.21966 1.04425 1.01160 0.89957 1.20780 0.78822 0.85263 0.84534 1.90689 1.41864 1.25635 1.86331 1.48081 1.54472 1.26001 1.04579 1.21975 0.92789 0.84345 1.02526 1.21805 0.97702 1.01758 0.94691 1.21411 1.00330 0.94769 0.98571 1.21033 0.94144 0.90362 0.90222 0.98732 1.21948 0.96681 0.92879 0.85584 0.90096 1.22682 1.00110 0.95065 0.97041 1.21414 0.88006 0.93953 0.91071 1.44457 1.33410 1.37642 1.18191 1.19414 1.15761 1.07362 0.93726 0.89457 1.25704 1.01057 0.96591 1.02935 1.70180 1.40228 1.12940 1.36873 0.85074 0.78227 0.76431 0.79716 1.21394 1.22529 1.18820 1.44389 1.38994 1.10556 1.17887 1.22140 1.06324 0.86271 0.99798 1.21164 1.05006 0.99799 0.98626 1.21147 1.07281 0.94317 1.01637 1.22162 1.01676 1.00481 0.91795 0.92463 0.90463 0.90847 0.85435 0.86994 0.86566 0.89279 0.87036 0.92178 0.91525 0.92817 0.91498 0.90690 0.97560 0.96862 0.94482 0.80262 0.83774 0.84157 0.81571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 8.97 71.98 0.65 -2.29 16 2 C 0.15 2.76 2.67 44.99 0.12 2.88 16 3 H 0.09 1.95 7.88 -2.39 -0.02 1.93 16 4 C -0.13 -2.13 3.59 29.85 0.11 -2.02 16 5 C 0.52 12.96 7.41 87.66 0.65 13.61 16 6 O -0.57 -18.56 10.76 -3.03 -0.03 -18.59 16 7 N -0.60 -15.28 2.92 -792.08 -2.31 -17.60 16 8 C 0.10 1.70 6.29 85.87 0.54 2.24 16 9 C -0.12 -2.35 5.90 30.64 0.18 -2.16 16 10 C -0.11 -3.45 5.47 30.26 0.17 -3.28 16 11 C 0.15 6.06 2.62 45.39 0.12 6.18 16 12 H 0.00 -0.21 8.03 -2.39 -0.02 -0.23 16 13 C 0.13 4.72 3.29 46.13 0.15 4.87 16 14 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 15 C -0.11 -4.64 5.07 31.59 0.16 -4.48 16 16 C 0.18 9.50 5.48 86.88 0.48 9.98 16 17 N -0.61 -31.90 3.36 -669.50 -2.25 -34.15 16 18 C -0.23 -13.05 9.95 84.03 0.84 -12.22 16 19 H 0.09 4.59 7.33 -2.91 -0.02 4.56 16 20 C -0.07 -4.04 5.45 84.86 0.46 -3.58 16 21 N -0.95 -59.17 10.69 21.65 0.23 -58.94 16 22 Si 0.98 46.09 29.56 68.60 2.03 48.12 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 25 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 26 N -0.44 -7.82 2.62 -502.00 -1.31 -9.14 16 27 C -0.02 -0.25 10.45 83.21 0.87 0.62 16 28 C -0.22 -3.86 10.86 22.14 0.24 -3.62 16 29 C -0.22 -4.11 10.86 22.14 0.24 -3.87 16 30 C -0.03 -0.59 11.39 83.21 0.95 0.35 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.81 5.95 -2.39 -0.01 1.79 16 33 H 0.07 1.09 7.91 -2.39 -0.02 1.07 16 34 H 0.13 1.30 7.95 -2.39 -0.02 1.28 16 35 H 0.11 1.56 7.74 -2.39 -0.02 1.54 16 36 H 0.12 1.09 6.18 -2.38 -0.01 1.07 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 41 H 0.05 1.79 7.75 -2.38 -0.02 1.77 16 42 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.07 3.32 6.14 -2.39 -0.01 3.30 16 44 H 0.01 0.35 7.85 -2.39 -0.02 0.33 16 45 H 0.01 0.79 7.29 -2.39 -0.02 0.77 16 46 H 0.25 14.86 8.31 -92.71 -0.77 14.08 16 47 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 48 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 49 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 50 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -74.05 382.43 4.17 -69.88 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.91 Total: 17.21 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 6.91 Total: 3.21 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -5.65 Total: -119.82 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.03 Total: -18.59 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -74.05 4.17 -69.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049853821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.130 kcal (2) G-P(sol) polarization free energy of solvation -74.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds