Wall clock time and date at job start Sat Apr 11 2020 03:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46833 * 2 1 4 4 C 1.53002 * 109.47438 * 240.00320 * 2 1 3 5 5 C 1.50706 * 109.46925 * 64.99636 * 4 2 1 6 6 O 1.21279 * 120.00072 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00258 * 179.97438 * 7 5 4 9 9 C 1.53950 * 113.58458 * 252.72667 * 8 7 5 10 10 C 1.52908 * 86.78390 * 220.66281 * 9 8 7 11 11 C 1.52905 * 121.13968 * 150.61448 * 10 9 8 12 12 C 1.53953 * 86.78082 * 100.82044 * 11 10 9 13 13 N 1.46494 * 113.57617 * 139.33853 * 12 11 10 14 14 C 1.36944 * 120.00137 * 107.28222 * 13 12 11 15 15 H 1.08003 * 119.99524 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00173 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99945 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00189 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47177 * 90.00142 * 18 16 14 20 20 H 1.48491 * 109.47180 * 210.00373 * 18 16 14 21 21 H 1.48498 * 109.46690 * 330.00357 * 18 16 14 22 22 C 1.52909 * 121.13464 * 259.17698 * 10 9 8 23 23 C 1.52911 * 88.04207 * 24.89412 * 10 9 8 24 24 N 1.46494 * 109.47281 * 120.00008 * 2 1 3 25 25 C 1.36341 * 125.63528 * 59.69710 * 24 2 1 26 26 C 1.34855 * 108.21707 * 179.83304 * 25 24 2 27 27 C 1.40887 * 107.41578 * 0.42076 * 26 25 24 28 28 C 1.34844 * 107.41951 * 359.74084 * 27 26 25 29 29 H 1.09007 * 109.47359 * 60.00511 * 1 2 3 30 30 H 1.09001 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47593 * 299.99575 * 1 2 3 32 32 H 1.09000 * 109.46497 * 304.99899 * 4 2 1 33 33 H 1.09000 * 109.47312 * 184.99678 * 4 2 1 34 34 H 0.96999 * 120.00047 * 0.02562 * 7 5 4 35 35 H 1.09010 * 112.82154 * 23.91542 * 8 7 5 36 36 H 1.09005 * 113.65764 * 335.13632 * 9 8 7 37 37 H 1.08995 * 113.66530 * 106.18286 * 9 8 7 38 38 H 1.09001 * 113.66453 * 215.29281 * 11 10 9 39 39 H 1.09000 * 113.66064 * 346.34724 * 11 10 9 40 40 H 1.09006 * 113.57798 * 270.12906 * 12 11 10 41 41 H 0.96999 * 120.00186 * 287.27372 * 13 12 11 42 42 H 0.96996 * 119.99852 * 179.97438 * 17 16 14 43 43 H 1.09004 * 113.66435 * 13.64808 * 22 10 9 44 44 H 1.09001 * 113.66083 * 144.61188 * 22 10 9 45 45 H 1.08997 * 113.66166 * 220.63044 * 23 10 9 46 46 H 1.08997 * 113.74485 * 89.58719 * 23 10 9 47 47 H 1.07997 * 125.89078 * 359.95891 * 25 24 2 48 48 H 1.07996 * 126.29083 * 180.16491 * 26 25 24 49 49 H 1.08009 * 126.29056 * 179.73697 * 27 26 25 50 50 H 1.08010 * 125.89118 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9854 -0.3912 -3.7002 8 6 1.5973 0.3651 -4.8933 9 6 0.4711 -0.3003 -5.7051 10 6 1.2466 0.1125 -6.9566 11 6 1.1637 -0.7075 -8.2445 12 6 0.1734 0.3551 -8.7547 13 7 0.3696 0.7110 -10.1622 14 6 -0.5265 0.2870 -11.1070 15 1 -1.3775 -0.3101 -10.8144 16 6 -0.3404 0.6238 -12.4407 17 7 -1.2013 0.2158 -13.3488 18 14 1.1321 1.6560 -12.9467 19 1 2.2743 0.7639 -13.2702 20 1 0.7821 2.4652 -14.1416 21 1 1.5102 2.5594 -11.8304 22 6 0.8357 1.3385 -7.7728 23 6 2.5159 0.1194 -6.1040 24 7 2.0183 -0.6906 1.1961 25 6 1.7560 -1.9867 1.5277 26 6 2.3800 -2.2586 2.6919 27 6 3.0441 -1.0845 3.0986 28 6 2.8054 -0.1416 2.1647 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -1.7197 -1.2952 33 1 3.1264 -0.7993 -1.2056 34 1 2.4893 -1.2150 -3.7908 35 1 1.4219 1.4209 -4.6862 36 1 0.4096 -1.3795 -5.5646 37 1 -0.4935 0.1970 -5.6042 38 1 2.0985 -0.7389 -8.8042 39 1 0.7168 -1.6923 -8.1081 40 1 -0.8664 0.1331 -8.5147 41 1 1.1341 1.2471 -10.4249 42 1 -1.0715 0.4514 -14.2807 43 1 0.1268 1.9882 -7.2595 44 1 1.6785 1.8832 -8.1985 45 1 3.1847 0.9520 -6.3219 46 1 3.0304 -0.8411 -6.0750 47 1 1.1541 -2.6773 0.9557 48 1 2.3689 -3.2017 3.2181 49 1 3.6356 -0.9622 3.9940 50 1 3.1739 0.8735 2.1812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122088607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:01 Heat of formation + Delta-G solvation = 49.184971 kcal Electronic energy + Delta-G solvation = -27356.567184 eV Core-core repulsion = 23578.535416 eV Total energy + Delta-G solvation = -3778.031768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.18225 -41.65737 -40.39489 -37.44118 -35.95308 -35.27302 -33.74448 -32.07561 -30.69043 -29.59759 -28.95276 -26.76462 -26.66563 -25.92349 -24.35718 -23.14324 -21.68751 -21.54567 -21.26620 -20.29584 -19.79209 -18.77050 -18.53696 -17.48002 -17.29267 -16.97125 -16.50990 -16.15534 -15.82447 -15.70410 -15.46490 -15.10222 -14.82674 -14.66130 -14.35104 -14.07810 -13.75327 -13.69743 -13.61354 -13.46754 -13.41646 -13.11329 -13.00202 -12.93279 -12.89929 -12.82586 -12.39382 -12.33060 -12.20780 -12.10417 -12.01233 -11.86517 -11.46839 -11.06462 -10.94538 -10.84756 -10.70341 -9.98514 -9.49812 -9.26471 -9.01633 -8.02895 -5.35629 1.37211 1.40852 1.41107 1.48314 1.57552 1.83295 2.19829 2.41300 2.48131 3.27234 3.45387 3.47371 3.50204 3.66015 3.72219 3.77403 3.89249 3.90201 4.08727 4.14488 4.21442 4.30062 4.43341 4.47259 4.49992 4.52253 4.58693 4.69704 4.76503 4.80239 4.82404 4.86190 4.94266 4.95457 4.96831 5.05256 5.09004 5.12706 5.20612 5.29385 5.45055 5.47583 5.49094 5.62641 5.63377 5.78154 6.14260 6.22666 6.38837 6.53918 6.56477 7.07901 7.24345 7.85692 8.04810 9.18771 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.041670 B = 0.001670 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.781327 B =16764.875423 C =16856.251243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.151 3.849 3 H 0.098 0.902 4 C -0.142 4.142 5 C 0.518 3.482 6 O -0.576 6.576 7 N -0.705 5.705 8 C 0.131 3.869 9 C -0.122 4.122 10 C -0.092 4.092 11 C -0.139 4.139 12 C 0.147 3.853 13 N -0.743 5.743 14 C -0.235 4.235 15 H 0.055 0.945 16 C -0.066 4.066 17 N -0.985 5.985 18 Si 0.957 3.043 19 H -0.277 1.277 20 H -0.297 1.297 21 H -0.252 1.252 22 C -0.123 4.123 23 C -0.116 4.116 24 N -0.443 5.443 25 C -0.018 4.018 26 C -0.224 4.224 27 C -0.221 4.221 28 C -0.028 4.028 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.417 0.583 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.366 0.634 42 H 0.257 0.743 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.107 0.893 47 H 0.177 0.823 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.379 -3.888 32.821 35.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 H 0.116 0.884 4 C -0.182 4.182 5 C 0.305 3.695 6 O -0.455 6.455 7 N -0.356 5.356 8 C 0.026 3.974 9 C -0.161 4.161 10 C -0.093 4.093 11 C -0.179 4.179 12 C 0.038 3.962 13 N -0.384 5.384 14 C -0.366 4.366 15 H 0.073 0.927 16 C -0.257 4.257 17 N -0.636 5.636 18 Si 0.784 3.216 19 H -0.203 1.203 20 H -0.224 1.224 21 H -0.176 1.176 22 C -0.162 4.162 23 C -0.154 4.154 24 N -0.119 5.119 25 C -0.148 4.148 26 C -0.248 4.248 27 C -0.246 4.246 28 C -0.157 4.157 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.254 0.746 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.200 0.800 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.125 0.875 47 H 0.195 0.805 48 H 0.159 0.841 49 H 0.158 0.842 50 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 11.614 -3.072 32.499 34.649 hybrid contribution 0.486 0.205 -1.004 1.134 sum 12.100 -2.867 31.496 33.862 Atomic orbital electron populations 1.22210 0.93172 1.03167 1.03377 1.21034 0.95664 0.96465 0.81939 0.88384 1.21963 1.04801 1.01096 0.90340 1.20713 0.78310 0.85094 0.85346 1.90708 1.41443 1.26295 1.87099 1.45908 1.56995 1.27847 1.04832 1.22348 0.95779 0.96545 0.82762 1.23180 0.97832 1.01738 0.93319 1.21898 0.98101 0.96957 0.92325 1.23412 1.00319 0.98342 0.95863 1.21914 0.97027 0.95543 0.81703 1.42757 1.28740 1.63281 1.03663 1.19120 1.03601 1.25652 0.88199 0.92735 1.25537 1.01743 1.02675 0.95774 1.69894 1.39683 1.52590 1.01386 0.85374 0.79432 0.79022 0.77734 1.20315 1.22393 1.17620 1.23115 1.00393 0.96087 0.96557 1.23139 0.95745 1.03716 0.92784 1.44401 1.39027 1.10391 1.18097 1.22102 1.06371 0.86489 0.99815 1.21170 1.05087 0.99862 0.98684 1.21154 1.07343 0.94324 1.01756 1.22196 1.01454 1.00503 0.91592 0.90241 0.91281 0.92541 0.85995 0.86561 0.74563 0.88435 0.88306 0.92039 0.90595 0.92157 0.91655 0.80019 0.93400 0.91356 0.89752 0.90350 0.87494 0.80540 0.84112 0.84211 0.81010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.97 71.98 0.65 -1.57 16 2 C 0.15 1.85 2.67 44.99 0.12 1.97 16 3 H 0.10 1.37 7.88 -2.38 -0.02 1.35 16 4 C -0.14 -1.22 5.17 29.85 0.15 -1.06 16 5 C 0.52 7.53 7.55 87.66 0.66 8.19 16 6 O -0.58 -13.16 13.57 -3.03 -0.04 -13.20 16 7 N -0.70 -8.30 5.35 -439.52 -2.35 -10.66 16 8 C 0.13 2.19 4.24 45.63 0.19 2.38 16 9 C -0.12 -2.36 7.64 30.88 0.24 -2.13 16 10 C -0.09 -2.05 1.11 -52.31 -0.06 -2.11 16 11 C -0.14 -4.07 7.64 30.88 0.24 -3.83 16 12 C 0.15 5.38 4.48 45.63 0.20 5.59 16 13 N -0.74 -34.34 5.20 -319.94 -1.67 -36.01 16 14 C -0.23 -13.43 10.45 84.03 0.88 -12.55 16 15 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 16 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 17 N -0.99 -63.44 13.97 21.65 0.30 -63.14 16 18 Si 0.96 45.34 27.74 68.60 1.90 47.24 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 21 H -0.25 -10.71 6.52 99.48 0.65 -10.07 16 22 C -0.12 -3.45 7.59 30.88 0.23 -3.22 16 23 C -0.12 -1.84 7.59 30.88 0.23 -1.60 16 24 N -0.44 -5.92 2.62 -502.01 -1.31 -7.23 16 25 C -0.02 -0.24 10.45 83.21 0.87 0.63 16 26 C -0.22 -3.36 10.86 22.14 0.24 -3.12 16 27 C -0.22 -3.43 10.86 22.14 0.24 -3.19 16 28 C -0.03 -0.40 11.39 83.21 0.95 0.55 16 29 H 0.08 1.41 5.95 -2.38 -0.01 1.39 16 30 H 0.07 0.78 7.91 -2.39 -0.02 0.76 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.12 0.60 8.06 -2.39 -0.02 0.58 16 33 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.42 2.38 8.73 -92.71 -0.81 1.57 16 35 H 0.10 2.06 7.47 -2.38 -0.02 2.04 16 36 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.07 2.58 8.10 -2.38 -0.02 2.56 16 41 H 0.37 16.13 5.79 -92.71 -0.54 15.59 16 42 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 43 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.08 2.31 8.12 -2.39 -0.02 2.29 16 45 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.11 1.29 8.12 -2.39 -0.02 1.27 16 47 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 48 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 49 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 50 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -74.01 403.19 2.86 -71.14 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.47 Total: 30.36 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 6.51 Total: -18.52 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -5.03 Total: -117.03 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.04 Total: -13.20 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Total: -74.01 2.86 -71.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122088607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.327 kcal (2) G-P(sol) polarization free energy of solvation -74.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds