Wall clock time and date at job start Sat Apr 11 2020 03:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47168 * 2 1 4 4 C 1.53002 * 109.47294 * 119.99902 * 2 1 3 5 5 C 1.52997 * 109.47574 * 185.00172 * 4 2 1 6 6 N 1.46498 * 109.47322 * 179.97438 * 5 4 2 7 7 C 1.34772 * 119.99855 * 179.97438 * 6 5 4 8 8 O 1.21625 * 120.00421 * 359.97438 * 7 6 5 9 9 C 1.47264 * 119.99846 * 180.02562 * 7 6 5 10 10 C 1.46688 * 126.94144 * 0.02562 * 9 7 6 11 11 C 1.34495 * 106.32907 * 179.97438 * 10 9 7 12 12 C 1.50696 * 125.56810 * 180.02562 * 11 10 9 13 13 C 1.53001 * 117.50118 * 33.72133 * 12 11 10 14 14 C 1.53008 * 117.50154 * 325.06189 * 12 11 10 15 15 N 1.36441 * 108.85683 * 0.02562 * 11 10 9 16 16 H 0.97009 * 124.84797 * 180.02562 * 15 11 10 17 17 C 1.34655 * 110.30291 * 359.97438 * 15 11 10 18 18 C 1.50699 * 125.80611 * 179.97438 * 17 15 11 19 19 C 1.52999 * 117.49475 * 8.72741 * 18 17 15 20 20 C 1.53007 * 117.49929 * 300.06882 * 18 17 15 21 21 N 1.46496 * 109.47214 * 239.99919 * 2 1 3 22 22 C 1.36937 * 119.99748 * 85.00136 * 21 2 1 23 23 H 1.07996 * 120.00496 * 359.97438 * 22 21 2 24 24 C 1.38820 * 119.99845 * 180.02562 * 22 21 2 25 25 N 1.31620 * 119.99750 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99984 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47207 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46853 * 119.99833 * 26 24 22 29 29 H 1.48490 * 109.47207 * 240.00199 * 26 24 22 30 30 H 1.09000 * 109.46600 * 300.00236 * 1 2 3 31 31 H 1.08995 * 109.46914 * 59.99637 * 1 2 3 32 32 H 1.08995 * 109.47050 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46984 * 64.99851 * 4 2 1 34 34 H 1.09006 * 109.47113 * 304.99886 * 4 2 1 35 35 H 1.08998 * 109.47228 * 59.99828 * 5 4 2 36 36 H 1.08998 * 109.46814 * 300.00264 * 5 4 2 37 37 H 0.96998 * 120.00163 * 0.02562 * 6 5 4 38 38 H 1.07998 * 126.83575 * 0.23112 * 10 9 7 39 39 H 1.09001 * 115.55347 * 179.39417 * 12 11 10 40 40 H 1.09007 * 117.49735 * 0.02562 * 13 12 11 41 41 H 1.08999 * 117.50170 * 145.01601 * 13 12 11 42 42 H 1.08991 * 117.49918 * 214.98095 * 14 12 11 43 43 H 1.09004 * 117.49569 * 359.97438 * 14 12 11 44 44 H 1.08991 * 115.55261 * 154.39635 * 18 17 15 45 45 H 1.09004 * 117.50413 * 359.97438 * 19 18 17 46 46 H 1.09006 * 117.50039 * 145.02082 * 19 18 17 47 47 H 1.08993 * 117.49792 * 214.97499 * 20 18 17 48 48 H 1.09000 * 117.49852 * 359.97438 * 20 18 17 49 49 H 0.96997 * 120.00196 * 265.00078 * 21 2 1 50 50 H 0.96998 * 119.99173 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3138 6 7 4.0531 -1.3033 2.5103 7 6 5.3740 -1.3394 2.7755 8 8 6.1607 -0.7995 2.0213 9 6 5.8649 -2.0336 3.9779 10 6 5.0576 -2.7324 4.9838 11 6 5.9219 -3.2118 5.8958 12 6 5.5515 -4.0053 7.1223 13 6 4.3496 -4.9463 7.0186 14 6 4.2394 -3.6495 7.8243 15 7 7.1888 -2.8625 5.5292 16 1 7.9917 -3.0904 6.0236 17 6 7.1656 -2.1571 4.3824 18 6 8.3682 -1.5980 3.6667 19 6 9.7497 -2.0180 4.1725 20 6 9.2405 -0.5970 4.4269 21 7 2.0184 -0.6906 -1.1961 22 6 2.1492 -0.0074 -2.3757 23 1 1.8920 1.0403 -2.4243 24 6 2.6114 -0.6620 -3.5093 25 7 2.9244 -1.9390 -3.4501 26 14 2.7892 0.2698 -5.1185 27 1 2.3755 1.6822 -4.9210 28 1 4.2059 0.2268 -5.5614 29 1 1.9281 -0.3588 -6.1521 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.7517 -1.7715 1.2056 34 1 1.6055 -0.2617 2.1370 35 1 3.8532 0.4370 1.3574 36 1 3.9995 -1.0727 0.4261 37 1 3.4258 -1.7349 3.1112 38 1 3.9833 -2.8436 4.9885 39 1 6.3865 -4.3224 7.7470 40 1 3.8270 -4.9919 6.0631 41 1 4.3938 -5.8824 7.5753 42 1 4.2111 -3.7329 8.9107 43 1 3.6443 -2.8412 7.3992 44 1 8.2492 -1.4485 2.5936 45 1 9.7888 -2.6984 5.0233 46 1 10.5397 -2.1445 3.4323 47 1 9.6957 0.2107 3.8539 48 1 8.9444 -0.3425 5.4446 49 1 2.2491 -1.6317 -1.1526 50 1 3.2470 -2.3964 -4.2423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274735708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:27 Heat of formation + Delta-G solvation = 55.888134 kcal Electronic energy + Delta-G solvation = -27745.521937 eV Core-core repulsion = 23967.780840 eV Total energy + Delta-G solvation = -3777.741097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.68476 -38.87225 -37.74776 -36.58296 -36.41508 -34.13314 -32.21147 -31.25774 -29.22859 -29.06544 -27.95280 -24.25429 -24.03986 -23.41157 -22.74289 -22.68155 -22.03816 -20.84372 -20.11577 -20.01476 -19.12891 -17.72130 -17.12444 -16.07790 -15.82356 -15.57098 -15.23727 -15.11517 -14.76818 -14.62409 -14.31045 -13.93972 -13.72960 -13.47289 -13.36723 -12.93155 -12.74799 -12.39062 -12.09158 -11.96641 -11.93848 -11.92415 -11.86076 -11.45519 -11.38496 -10.95769 -10.90041 -10.84849 -10.69088 -10.65687 -10.62591 -10.54149 -10.19196 -9.89868 -9.57537 -9.45379 -8.98668 -8.84244 -8.56351 -8.01840 -6.87142 -5.67929 -2.96140 1.66379 2.09713 2.79191 3.49879 3.52541 3.55398 3.57568 3.64073 3.69680 3.87686 4.22606 4.32867 4.48774 4.59410 4.62426 4.67173 4.67385 4.76256 4.99693 5.12955 5.27309 5.29899 5.31922 5.40171 5.45679 5.51016 5.56998 5.59105 5.64883 5.69101 5.74690 5.78607 5.79149 5.94768 5.98333 6.14765 6.18373 6.27212 6.45706 6.49687 6.60183 6.62385 6.79034 6.82738 6.92418 6.95881 7.14017 7.21745 7.79356 7.95095 8.50559 8.68722 9.61890 10.19416 10.54034 11.54876 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012013 B = 0.002580 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.153639 B =10849.260953 C =12415.914086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.124 3.876 6 N -0.724 5.724 7 C 0.585 3.415 8 O -0.546 6.546 9 C -0.215 4.215 10 C -0.162 4.162 11 C 0.048 3.952 12 C -0.096 4.096 13 C -0.165 4.165 14 C -0.166 4.166 15 N -0.547 5.547 16 H 0.411 0.589 17 C 0.136 3.864 18 C -0.087 4.087 19 C -0.184 4.184 20 C -0.165 4.165 21 N -0.723 5.723 22 C -0.235 4.235 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.293 1.293 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.394 0.606 38 H 0.144 0.856 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.147 0.853 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.092 0.908 49 H 0.383 0.617 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.505 -4.423 27.108 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C 0.002 3.998 6 N -0.374 5.374 7 C 0.373 3.627 8 O -0.425 6.425 9 C -0.225 4.225 10 C -0.186 4.186 11 C -0.061 4.061 12 C -0.115 4.115 13 C -0.202 4.202 14 C -0.203 4.203 15 N -0.143 5.143 16 H 0.248 0.752 17 C 0.019 3.981 18 C -0.106 4.106 19 C -0.221 4.221 20 C -0.202 4.202 21 N -0.365 5.365 22 C -0.366 4.366 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.220 1.220 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.227 0.773 38 H 0.161 0.839 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.165 0.835 45 H 0.104 0.896 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.110 0.890 49 H 0.217 0.783 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.153 -3.928 26.481 27.984 hybrid contribution 0.164 -0.284 -0.371 0.495 sum 8.317 -4.213 26.110 27.724 Atomic orbital electron populations 1.22424 0.99231 1.00783 0.99894 1.20153 0.91787 0.95582 0.86088 0.93327 1.22052 0.94153 1.01688 0.99173 1.21403 0.94150 0.97084 0.87198 1.45865 1.07015 1.57208 1.27354 1.17292 0.82240 0.79252 0.83924 1.90753 1.55341 1.46745 1.49676 1.20131 0.92153 1.10621 0.99553 1.21679 0.98418 1.03458 0.95057 1.19171 0.83569 1.05095 0.98294 1.20266 0.93193 1.02383 0.95640 1.23112 1.00066 0.94286 1.02764 1.23104 0.98487 0.99552 0.99152 1.41287 1.08136 1.44166 1.20667 0.75223 1.19242 0.94551 0.96821 0.87474 1.20884 0.86207 1.02744 1.00780 1.23031 0.97460 0.98173 1.03472 1.23026 1.02744 0.93066 1.01390 1.42462 1.78043 1.10675 1.05355 1.19269 1.36190 0.93834 0.87313 0.91192 1.24724 1.02311 0.95965 0.98018 1.69671 1.51122 1.08646 1.28650 0.86152 0.77281 0.78793 0.84204 1.20612 1.21930 1.22036 0.94606 0.92783 0.93552 0.91682 0.92025 0.91994 0.89842 0.77255 0.83879 0.87368 0.87909 0.88298 0.88348 0.88002 0.83538 0.89568 0.87699 0.87711 0.88974 0.78272 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.49 37.16 0.35 -2.57 16 2 C 0.17 3.44 2.89 -67.93 -0.20 3.24 16 3 H 0.05 0.99 8.08 -51.92 -0.42 0.57 16 4 C -0.13 -2.12 4.87 -26.73 -0.13 -2.25 16 5 C 0.12 2.21 5.56 -4.04 -0.02 2.19 16 6 N -0.72 -11.06 5.55 -61.44 -0.34 -11.40 16 7 C 0.58 9.96 7.81 -12.59 -0.10 9.86 16 8 O -0.55 -11.24 14.89 5.26 0.08 -11.16 16 9 C -0.21 -3.00 6.29 -103.35 -0.65 -3.65 16 10 C -0.16 -1.78 9.46 -37.49 -0.35 -2.14 16 11 C 0.05 0.45 6.83 -81.87 -0.56 -0.11 16 12 C -0.10 -0.65 6.33 -91.77 -0.58 -1.23 16 13 C -0.16 -1.00 10.04 -26.69 -0.27 -1.27 16 14 C -0.17 -0.97 10.04 -26.69 -0.27 -1.24 16 15 N -0.55 -5.04 5.80 -5.42 -0.03 -5.08 16 16 H 0.41 2.61 7.84 -40.82 -0.32 2.29 16 17 C 0.14 1.67 6.69 -81.88 -0.55 1.12 16 18 C -0.09 -1.03 5.61 -91.77 -0.51 -1.54 16 19 C -0.18 -1.52 10.13 -26.69 -0.27 -1.79 16 20 C -0.16 -1.53 10.24 -26.69 -0.27 -1.80 16 21 N -0.72 -18.15 4.57 -53.42 -0.24 -18.39 16 22 C -0.23 -6.60 9.93 -15.06 -0.15 -6.75 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 25 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 26 Si 0.90 23.01 29.55 -169.99 -5.02 17.98 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 29 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.83 7.75 -51.93 -0.40 1.43 16 37 H 0.39 4.80 7.60 -40.82 -0.31 4.49 16 38 H 0.14 1.30 7.70 -52.49 -0.40 0.90 16 39 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.69 7.91 -51.93 -0.41 0.28 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.64 7.93 -51.93 -0.41 0.23 16 44 H 0.15 2.13 6.64 -51.93 -0.34 1.79 16 45 H 0.09 0.55 7.08 -51.93 -0.37 0.18 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 50 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 412.61 15.07 6.22 6.22 Total: -1.00 -34.21 412.61 -11.58 -45.79 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -8.33 Total: 14.53 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -4.63 Total: -10.44 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.11 Total: -62.91 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.21 -11.58 -45.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274735708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.675 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds