Wall clock time and date at job start Sat Apr 11 2020 03:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47168 * 2 1 4 4 C 1.53002 * 109.47294 * 119.99902 * 2 1 3 5 5 C 1.52997 * 109.47574 * 185.00172 * 4 2 1 6 6 N 1.46498 * 109.47322 * 179.97438 * 5 4 2 7 7 C 1.34772 * 119.99855 * 179.97438 * 6 5 4 8 8 O 1.21625 * 120.00421 * 359.97438 * 7 6 5 9 9 C 1.47264 * 119.99846 * 180.02562 * 7 6 5 10 10 C 1.46688 * 126.94144 * 0.02562 * 9 7 6 11 11 C 1.34495 * 106.32907 * 179.97438 * 10 9 7 12 12 C 1.50696 * 125.56810 * 180.02562 * 11 10 9 13 13 C 1.53001 * 117.50118 * 33.72133 * 12 11 10 14 14 C 1.53008 * 117.50154 * 325.06189 * 12 11 10 15 15 N 1.36441 * 108.85683 * 0.02562 * 11 10 9 16 16 H 0.97009 * 124.84797 * 180.02562 * 15 11 10 17 17 C 1.34655 * 110.30291 * 359.97438 * 15 11 10 18 18 C 1.50699 * 125.80611 * 179.97438 * 17 15 11 19 19 C 1.52999 * 117.49475 * 8.72741 * 18 17 15 20 20 C 1.53007 * 117.49929 * 300.06882 * 18 17 15 21 21 N 1.46496 * 109.47214 * 239.99919 * 2 1 3 22 22 C 1.36937 * 119.99748 * 85.00136 * 21 2 1 23 23 H 1.07996 * 120.00496 * 359.97438 * 22 21 2 24 24 C 1.38820 * 119.99845 * 180.02562 * 22 21 2 25 25 N 1.31620 * 119.99750 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99984 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47207 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46853 * 119.99833 * 26 24 22 29 29 H 1.48490 * 109.47207 * 240.00199 * 26 24 22 30 30 H 1.09000 * 109.46600 * 300.00236 * 1 2 3 31 31 H 1.08995 * 109.46914 * 59.99637 * 1 2 3 32 32 H 1.08995 * 109.47050 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46984 * 64.99851 * 4 2 1 34 34 H 1.09006 * 109.47113 * 304.99886 * 4 2 1 35 35 H 1.08998 * 109.47228 * 59.99828 * 5 4 2 36 36 H 1.08998 * 109.46814 * 300.00264 * 5 4 2 37 37 H 0.96998 * 120.00163 * 0.02562 * 6 5 4 38 38 H 1.07998 * 126.83575 * 0.23112 * 10 9 7 39 39 H 1.09001 * 115.55347 * 179.39417 * 12 11 10 40 40 H 1.09007 * 117.49735 * 0.02562 * 13 12 11 41 41 H 1.08999 * 117.50170 * 145.01601 * 13 12 11 42 42 H 1.08991 * 117.49918 * 214.98095 * 14 12 11 43 43 H 1.09004 * 117.49569 * 359.97438 * 14 12 11 44 44 H 1.08991 * 115.55261 * 154.39635 * 18 17 15 45 45 H 1.09004 * 117.50413 * 359.97438 * 19 18 17 46 46 H 1.09006 * 117.50039 * 145.02082 * 19 18 17 47 47 H 1.08993 * 117.49792 * 214.97499 * 20 18 17 48 48 H 1.09000 * 117.49852 * 359.97438 * 20 18 17 49 49 H 0.96997 * 120.00196 * 265.00078 * 21 2 1 50 50 H 0.96998 * 119.99173 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3138 6 7 4.0531 -1.3033 2.5103 7 6 5.3740 -1.3394 2.7755 8 8 6.1607 -0.7995 2.0213 9 6 5.8649 -2.0336 3.9779 10 6 5.0576 -2.7324 4.9838 11 6 5.9219 -3.2118 5.8958 12 6 5.5515 -4.0053 7.1223 13 6 4.3496 -4.9463 7.0186 14 6 4.2394 -3.6495 7.8243 15 7 7.1888 -2.8625 5.5292 16 1 7.9917 -3.0904 6.0236 17 6 7.1656 -2.1571 4.3824 18 6 8.3682 -1.5980 3.6667 19 6 9.7497 -2.0180 4.1725 20 6 9.2405 -0.5970 4.4269 21 7 2.0184 -0.6906 -1.1961 22 6 2.1492 -0.0074 -2.3757 23 1 1.8920 1.0403 -2.4243 24 6 2.6114 -0.6620 -3.5093 25 7 2.9244 -1.9390 -3.4501 26 14 2.7892 0.2698 -5.1185 27 1 2.3755 1.6822 -4.9210 28 1 4.2059 0.2268 -5.5614 29 1 1.9281 -0.3588 -6.1521 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.7517 -1.7715 1.2056 34 1 1.6055 -0.2617 2.1370 35 1 3.8532 0.4370 1.3574 36 1 3.9995 -1.0727 0.4261 37 1 3.4258 -1.7349 3.1112 38 1 3.9833 -2.8436 4.9885 39 1 6.3865 -4.3224 7.7470 40 1 3.8270 -4.9919 6.0631 41 1 4.3938 -5.8824 7.5753 42 1 4.2111 -3.7329 8.9107 43 1 3.6443 -2.8412 7.3992 44 1 8.2492 -1.4485 2.5936 45 1 9.7888 -2.6984 5.0233 46 1 10.5397 -2.1445 3.4323 47 1 9.6957 0.2107 3.8539 48 1 8.9444 -0.3425 5.4446 49 1 2.2491 -1.6317 -1.1526 50 1 3.2470 -2.3964 -4.2423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274735708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:00:26 Heat of formation + Delta-G solvation = 34.385420 kcal Electronic energy + Delta-G solvation = -27746.454364 eV Core-core repulsion = 23967.780840 eV Total energy + Delta-G solvation = -3778.673524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.53343 -40.19952 -38.41328 -38.04563 -37.23433 -35.72990 -34.12095 -32.31369 -30.88773 -29.99758 -29.45885 -25.95469 -25.03438 -24.70085 -23.42463 -23.25442 -23.15813 -21.85325 -21.54353 -20.81253 -20.43143 -19.24022 -18.47577 -17.03382 -16.98146 -16.76838 -16.64183 -16.32188 -15.87720 -15.64985 -15.33083 -15.22827 -15.18093 -14.70334 -14.64132 -14.32354 -14.09682 -13.72173 -13.55100 -13.22140 -12.93941 -12.84884 -12.62518 -12.60032 -12.53504 -12.34249 -12.25542 -12.18400 -12.08478 -12.02156 -11.62032 -11.58452 -11.44146 -11.34274 -11.31160 -10.96121 -10.80780 -10.12633 -9.74747 -8.96647 -8.85223 -7.91476 -5.18259 0.65738 1.29126 1.45561 1.47388 1.56519 1.97830 2.43515 2.51584 2.57823 2.94659 3.14599 3.42664 3.47128 3.66923 3.81205 3.93178 3.99645 4.00546 4.02818 4.06509 4.17584 4.17728 4.26542 4.29227 4.40199 4.55491 4.62792 4.65612 4.68666 4.78175 4.87169 4.88194 4.91138 5.02250 5.04631 5.05466 5.11066 5.12466 5.15145 5.24036 5.33416 5.35726 5.41095 5.54907 5.55834 5.63242 5.73582 5.95050 6.31593 6.51192 6.73652 7.37157 7.40904 8.15362 8.36804 9.32481 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012013 B = 0.002580 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.153639 B =10849.260953 C =12415.914086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.165 3.835 3 H 0.042 0.958 4 C -0.115 4.115 5 C 0.137 3.863 6 N -0.711 5.711 7 C 0.576 3.424 8 O -0.595 6.595 9 C -0.253 4.253 10 C -0.173 4.173 11 C 0.059 3.941 12 C -0.104 4.104 13 C -0.165 4.165 14 C -0.159 4.159 15 N -0.531 5.531 16 H 0.427 0.573 17 C 0.137 3.863 18 C -0.122 4.122 19 C -0.157 4.157 20 C -0.158 4.158 21 N -0.736 5.736 22 C -0.230 4.230 23 H 0.074 0.926 24 C -0.081 4.081 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.265 1.265 28 H -0.299 1.299 29 H -0.293 1.293 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.033 0.967 37 H 0.412 0.588 38 H 0.158 0.842 39 H 0.129 0.871 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.371 0.629 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.114 -4.723 30.617 31.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.056 3.944 3 H 0.060 0.940 4 C -0.153 4.153 5 C 0.013 3.987 6 N -0.362 5.362 7 C 0.367 3.633 8 O -0.478 6.478 9 C -0.263 4.263 10 C -0.197 4.197 11 C -0.050 4.050 12 C -0.123 4.123 13 C -0.202 4.202 14 C -0.197 4.197 15 N -0.128 5.128 16 H 0.267 0.733 17 C 0.018 3.982 18 C -0.141 4.141 19 C -0.194 4.194 20 C -0.196 4.196 21 N -0.376 5.376 22 C -0.362 4.362 23 H 0.092 0.908 24 C -0.272 4.272 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.190 1.190 28 H -0.226 1.226 29 H -0.220 1.220 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.248 0.752 38 H 0.176 0.824 39 H 0.147 0.853 40 H 0.112 0.888 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.114 0.886 44 H 0.125 0.875 45 H 0.131 0.869 46 H 0.130 0.870 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.203 0.797 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.715 -4.214 30.067 31.326 hybrid contribution 0.307 -0.168 -1.351 1.395 sum 8.022 -4.381 28.717 30.136 Atomic orbital electron populations 1.22252 0.96967 1.01077 1.00914 1.20454 0.93240 0.95119 0.85583 0.94000 1.21908 0.92395 1.02009 0.98979 1.21057 0.95355 0.95913 0.86406 1.45658 1.07090 1.56817 1.26657 1.17892 0.82195 0.78747 0.84499 1.90721 1.56504 1.48988 1.51561 1.20046 0.93816 1.12746 0.99645 1.21837 0.99369 1.03763 0.94716 1.19599 0.83077 1.03829 0.98513 1.20418 0.94360 1.02653 0.94860 1.23176 0.99221 0.95090 1.02691 1.23178 0.97267 0.99131 1.00082 1.41230 1.09016 1.42913 1.19613 0.73306 1.19257 0.94103 0.96598 0.88202 1.20695 0.88153 1.06136 0.99162 1.23165 0.94783 0.97687 1.03779 1.23094 1.01504 0.93578 1.01404 1.42669 1.78362 1.10240 1.06345 1.19643 1.34154 0.94070 0.88376 0.90771 1.25514 1.03404 0.96907 1.01414 1.69828 1.53088 1.10207 1.29100 0.85146 0.76567 0.78323 0.80250 1.18981 1.22629 1.21983 0.90560 0.94752 0.93604 0.91103 0.87762 0.93312 0.94824 0.75180 0.82412 0.85288 0.88825 0.86765 0.86629 0.88563 0.87459 0.86898 0.87039 0.87859 0.87757 0.79700 0.94320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.49 71.98 0.68 -4.49 16 2 C 0.16 6.42 2.89 44.99 0.13 6.55 16 3 H 0.04 1.69 8.08 -2.38 -0.02 1.68 16 4 C -0.11 -3.57 4.87 30.59 0.15 -3.42 16 5 C 0.14 5.07 5.56 86.38 0.48 5.55 16 6 N -0.71 -22.37 5.55 -466.54 -2.59 -24.96 16 7 C 0.58 20.82 7.81 86.62 0.68 21.49 16 8 O -0.60 -26.68 14.89 -4.11 -0.06 -26.74 16 9 C -0.25 -7.23 6.29 -19.04 -0.12 -7.35 16 10 C -0.17 -3.65 9.46 23.62 0.22 -3.42 16 11 C 0.06 0.99 6.83 40.98 0.28 1.27 16 12 C -0.10 -1.08 6.33 -11.54 -0.07 -1.15 16 13 C -0.16 -1.52 10.04 30.62 0.31 -1.22 16 14 C -0.16 -1.36 10.04 30.62 0.31 -1.06 16 15 N -0.53 -8.79 5.80 -171.07 -0.99 -9.78 16 16 H 0.43 4.14 7.84 -92.70 -0.73 3.41 16 17 C 0.14 3.37 6.69 41.78 0.28 3.65 16 18 C -0.12 -2.98 5.61 -11.54 -0.06 -3.04 16 19 C -0.16 -2.38 10.13 30.62 0.31 -2.07 16 20 C -0.16 -2.85 10.24 30.62 0.31 -2.53 16 21 N -0.74 -37.84 4.57 -322.93 -1.48 -39.31 16 22 C -0.23 -13.20 9.93 84.04 0.83 -12.37 16 23 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 24 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 25 N -0.97 -62.05 13.06 21.65 0.28 -61.77 16 26 Si 0.97 48.41 29.55 68.60 2.03 50.44 16 27 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 28 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 29 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.03 1.58 7.75 -2.39 -0.02 1.56 16 37 H 0.41 9.80 7.60 -92.71 -0.70 9.10 16 38 H 0.16 2.65 7.70 -2.91 -0.02 2.63 16 39 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 1.06 7.91 -2.38 -0.02 1.04 16 41 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.10 0.96 7.93 -2.38 -0.02 0.94 16 44 H 0.11 3.49 6.64 -2.39 -0.02 3.47 16 45 H 0.11 1.09 7.08 -2.39 -0.02 1.07 16 46 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 47 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.37 20.69 7.80 -92.71 -0.72 19.97 16 50 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -79.37 412.61 1.18 -78.19 By element: Atomic # 1 Polarization: 43.07 SS G_CDS: -1.19 Total: 41.88 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 5.18 Total: -7.96 kcal Atomic # 7 Polarization: -131.04 SS G_CDS: -4.78 Total: -135.82 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.06 Total: -26.74 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -79.37 1.18 -78.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274735708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.573 kcal (2) G-P(sol) polarization free energy of solvation -79.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds