Wall clock time and date at job start Sat Apr 11 2020 03:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47371 * 2 1 4 4 N 1.46506 * 109.47031 * 239.99483 * 2 1 3 5 5 C 1.36934 * 119.99740 * 85.00536 * 4 2 1 6 6 H 1.08004 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99974 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00077 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99958 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47085 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47157 * 119.99961 * 9 7 5 12 12 H 1.48507 * 109.47060 * 239.99671 * 9 7 5 13 13 C 1.53001 * 109.46825 * 119.99772 * 2 1 3 14 14 H 1.09000 * 109.52534 * 180.02562 * 13 2 1 15 15 C 1.53033 * 109.49934 * 300.15982 * 13 2 1 16 16 C 1.53041 * 109.53898 * 181.31773 * 15 13 2 17 17 C 1.53192 * 109.31320 * 298.63305 * 16 15 13 18 18 N 1.46927 * 108.77318 * 54.63839 * 17 16 15 19 19 C 1.34773 * 120.63516 * 126.41107 * 18 17 16 20 20 O 1.21277 * 120.00553 * 179.97438 * 19 18 17 21 21 C 1.50701 * 119.99638 * 359.97438 * 19 18 17 22 22 C 1.53000 * 109.47072 * 179.97438 * 21 19 18 23 23 C 1.50701 * 109.47072 * 179.97438 * 22 21 19 24 24 C 1.38647 * 120.78827 * 269.71740 * 23 22 21 25 25 C 1.38208 * 119.16349 * 179.75514 * 24 23 22 26 26 N 1.31874 * 120.75870 * 0.53650 * 25 24 23 27 27 C 1.31862 * 121.72903 * 359.74024 * 26 25 24 28 28 C 1.38209 * 120.76409 * 359.97321 * 27 26 25 29 29 C 1.46926 * 118.73580 * 306.38910 * 18 17 16 30 30 H 1.08999 * 109.46859 * 300.00186 * 1 2 3 31 31 H 1.08995 * 109.46767 * 60.00415 * 1 2 3 32 32 H 1.09004 * 109.47236 * 180.02562 * 1 2 3 33 33 H 0.96995 * 119.99669 * 265.00275 * 4 2 1 34 34 H 0.96993 * 120.00380 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.45686 * 61.29729 * 15 13 2 36 36 H 1.09004 * 109.45285 * 301.33466 * 15 13 2 37 37 H 1.09005 * 109.49689 * 178.68550 * 16 15 13 38 38 H 1.08994 * 109.52286 * 58.60459 * 16 15 13 39 39 H 1.08997 * 109.58972 * 294.84829 * 17 16 15 40 40 H 1.09000 * 109.58650 * 174.42277 * 17 16 15 41 41 H 1.08998 * 109.47194 * 299.99510 * 21 19 18 42 42 H 1.09009 * 109.47313 * 60.00139 * 21 19 18 43 43 H 1.08997 * 109.47334 * 300.00216 * 22 21 19 44 44 H 1.09002 * 109.47390 * 60.00142 * 22 21 19 45 45 H 1.08000 * 120.42300 * 0.02562 * 24 23 22 46 46 H 1.07996 * 119.62067 * 180.29462 * 25 24 23 47 47 H 1.07998 * 119.61997 * 180.02562 * 27 26 25 48 48 H 1.07999 * 120.41535 * 180.02562 * 28 27 26 49 49 H 1.09006 * 109.58406 * 173.39827 * 29 18 17 50 50 H 1.09002 * 109.59019 * 293.81816 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1492 -0.0077 -2.3757 6 1 1.8920 1.0402 -2.4244 7 6 2.6114 -0.6622 -3.5092 8 7 2.9243 -1.9393 -3.4501 9 14 2.7906 0.2698 -5.1182 10 1 2.3767 1.6822 -4.9207 11 1 4.2074 0.2258 -5.5605 12 1 1.9294 -0.3580 -6.1524 13 6 2.0400 -0.7212 1.2493 14 1 3.1300 -0.7214 1.2505 15 6 1.5269 -0.0026 2.4992 16 6 2.0633 -0.7038 3.7493 17 6 1.5532 -2.1480 3.7783 18 7 1.9180 -2.8038 2.5152 19 6 2.5955 -3.9689 2.5169 20 8 2.8904 -4.5005 1.4675 21 6 2.9868 -4.6110 3.8230 22 6 3.7398 -5.9136 3.5454 23 6 4.1316 -6.5553 4.8515 24 6 5.3483 -6.2636 5.4487 25 6 5.6713 -6.8675 6.6492 26 7 4.8424 -7.7197 7.2199 27 6 3.6798 -8.0250 6.6779 28 6 3.2864 -7.4560 5.4814 29 6 1.5297 -2.1656 1.2500 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6319 -1.1525 34 1 3.2476 -2.3966 -4.2420 35 1 0.4371 -0.0253 2.5095 36 1 1.8684 1.0325 2.4887 37 1 1.7165 -0.1776 4.6387 38 1 3.1530 -0.7032 3.7279 39 1 0.4691 -2.1505 3.8915 40 1 2.0109 -2.6805 4.6120 41 1 3.6292 -3.9319 4.3836 42 1 2.0905 -4.8267 4.4047 43 1 3.0971 -6.5925 2.9849 44 1 4.6360 -5.6983 2.9636 45 1 6.0332 -5.5697 4.9841 46 1 6.6151 -6.6420 7.1233 47 1 3.0270 -8.7272 7.1751 48 1 2.3327 -7.7098 5.0427 49 1 1.9719 -2.7099 0.4154 50 1 0.4436 -2.1695 1.1569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496449439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:22 Heat of formation + Delta-G solvation = -2.781392 kcal Electronic energy + Delta-G solvation = -28336.999358 eV Core-core repulsion = 24556.714160 eV Total energy + Delta-G solvation = -3780.285198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.57885 -40.08918 -37.98446 -35.45043 -35.00309 -32.97936 -31.86702 -31.48717 -31.04193 -29.68042 -27.90928 -26.19381 -24.85617 -24.03749 -23.74422 -23.17206 -21.84658 -21.12154 -19.22583 -18.56641 -17.56116 -17.06365 -16.74788 -16.42105 -15.85977 -15.76694 -15.53303 -14.80823 -14.65558 -14.28359 -14.18166 -14.01239 -13.82312 -13.72998 -13.49607 -13.02845 -12.89942 -12.72529 -12.64227 -12.42128 -12.23450 -12.02834 -11.86019 -11.54787 -11.21710 -11.13221 -10.99514 -10.85465 -10.61656 -10.45072 -10.23182 -10.21270 -9.94544 -9.83552 -9.77336 -9.57058 -9.47143 -9.45280 -8.88042 -8.43554 -6.91643 -5.70555 -3.00255 0.83828 0.94109 2.72836 3.05919 3.45771 3.50827 3.52698 3.53567 4.16580 4.22587 4.46026 4.59857 4.64870 4.68984 4.80591 4.83926 4.87090 4.88864 4.93369 5.01460 5.21146 5.23686 5.33953 5.35057 5.43178 5.47582 5.57760 5.61046 5.65862 5.71973 5.76891 5.83699 5.86186 5.90994 5.95854 6.07374 6.11797 6.12897 6.25575 6.36405 6.41196 6.42524 6.58492 6.65384 6.78078 6.90086 7.13623 7.52061 7.67817 7.74569 8.30059 8.47061 9.57991 10.16141 10.50115 11.51589 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.016006 B = 0.002437 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.945824 B =11487.311671 C =12654.216267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.103 4.103 14 H 0.072 0.928 15 C -0.115 4.115 16 C -0.135 4.135 17 C 0.107 3.893 18 N -0.611 5.611 19 C 0.508 3.492 20 O -0.530 6.530 21 C -0.131 4.131 22 C -0.071 4.071 23 C -0.034 4.034 24 C -0.170 4.170 25 C 0.098 3.902 26 N -0.492 5.492 27 C 0.098 3.902 28 C -0.170 4.170 29 C 0.116 3.884 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.385 0.615 34 H 0.254 0.746 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.136 0.864 46 H 0.155 0.845 47 H 0.154 0.846 48 H 0.135 0.865 49 H 0.101 0.899 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 -5.527 24.028 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 H 0.066 0.934 4 N -0.368 5.368 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.123 4.123 14 H 0.090 0.910 15 C -0.153 4.153 16 C -0.173 4.173 17 C -0.016 4.016 18 N -0.345 5.345 19 C 0.296 3.704 20 O -0.406 6.406 21 C -0.171 4.171 22 C -0.108 4.108 23 C -0.042 4.042 24 C -0.190 4.190 25 C -0.058 4.058 26 N -0.202 5.202 27 C -0.059 4.059 28 C -0.190 4.190 29 C -0.006 4.006 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.220 0.780 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.154 0.846 46 H 0.172 0.828 47 H 0.172 0.828 48 H 0.153 0.847 49 H 0.119 0.881 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.846 -6.091 24.095 24.868 hybrid contribution -0.121 0.675 -1.702 1.835 sum -0.967 -5.415 22.393 23.059 Atomic orbital electron populations 1.22573 0.99551 1.00830 0.99946 1.20173 0.91815 0.95276 0.85815 0.93362 1.42524 1.78119 1.10820 1.05301 1.19259 1.36570 0.93837 0.87354 0.91213 1.24754 1.02263 0.95955 0.98022 1.69681 1.50734 1.08579 1.28714 0.86160 0.77275 0.78747 0.84255 1.20637 1.21945 1.21948 1.21765 1.00880 0.94352 0.95295 0.90952 1.21621 1.00885 0.99217 0.93545 1.21923 1.01400 0.95107 0.98852 1.21732 1.00224 0.93777 0.85913 1.48199 1.56270 1.22307 1.07720 1.20552 0.77823 0.80860 0.91212 1.90782 1.53828 1.62444 1.33503 1.21629 1.01877 0.97263 0.96320 1.20423 1.02104 0.95543 0.92775 1.20398 0.93535 0.94405 0.95864 1.22137 0.97541 1.01960 0.97317 1.22773 0.98464 0.92139 0.92449 1.67674 1.04057 1.14118 1.34325 1.22762 0.93008 0.97364 0.92742 1.22118 1.01158 0.98572 0.97176 1.21817 0.99778 0.93296 0.85702 0.94275 0.92899 0.93337 0.78041 0.93558 0.91417 0.91658 0.91007 0.91591 0.91399 0.90210 0.88894 0.88977 0.89463 0.89386 0.84638 0.82798 0.82833 0.84703 0.88089 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 8.79 37.16 0.33 -2.60 16 2 C 0.18 3.47 2.72 -67.93 -0.19 3.28 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.73 -18.20 5.04 -53.42 -0.27 -18.47 16 5 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 6 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 9 Si 0.90 22.73 29.55 -169.99 -5.02 17.70 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 13 C -0.10 -1.64 2.33 -90.50 -0.21 -1.85 16 14 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 15 C -0.11 -1.35 4.77 -26.69 -0.13 -1.48 16 16 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 17 C 0.11 0.98 6.34 -3.71 -0.02 0.96 16 18 N -0.61 -8.14 2.97 -172.77 -0.51 -8.65 16 19 C 0.51 7.21 7.70 -10.99 -0.08 7.13 16 20 O -0.53 -10.14 15.39 5.56 0.09 -10.06 16 21 C -0.13 -1.22 4.03 -27.88 -0.11 -1.33 16 22 C -0.07 -0.69 4.68 -27.88 -0.13 -0.82 16 23 C -0.03 -0.30 5.17 -104.32 -0.54 -0.84 16 24 C -0.17 -1.40 9.82 -39.44 -0.39 -1.78 16 25 C 0.10 0.84 11.18 -17.54 -0.20 0.64 16 26 N -0.49 -4.91 10.36 -13.25 -0.14 -5.05 16 27 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 28 C -0.17 -1.36 9.82 -39.44 -0.39 -1.75 16 29 C 0.12 1.90 5.21 -3.71 -0.02 1.88 16 30 H 0.04 0.55 6.46 -51.93 -0.34 0.21 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.85 6.32 -51.93 -0.33 0.52 16 33 H 0.38 10.44 6.16 -40.82 -0.25 10.19 16 34 H 0.25 7.64 8.31 -40.82 -0.34 7.31 16 35 H 0.07 0.76 6.50 -51.93 -0.34 0.42 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16 41 H 0.09 0.73 7.69 -51.93 -0.40 0.33 16 42 H 0.09 0.69 7.94 -51.92 -0.41 0.27 16 43 H 0.09 0.92 8.06 -51.93 -0.42 0.50 16 44 H 0.09 0.96 8.06 -51.93 -0.42 0.54 16 45 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 48 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 49 H 0.10 2.11 5.59 -51.93 -0.29 1.82 16 50 H 0.07 1.10 6.18 -51.93 -0.32 0.78 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -34.56 393.16 -9.90 -44.46 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -8.01 Total: 8.88 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.68 Total: -6.69 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.20 Total: -60.23 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.56 -9.90 -44.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496449439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.683 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds