Wall clock time and date at job start Sat Apr 11 2020 03:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46994 * 2 1 4 4 C 1.50697 * 109.47136 * 240.00094 * 2 1 3 5 5 O 1.21288 * 120.00019 * 240.00087 * 4 2 1 6 6 N 1.34774 * 120.00360 * 60.00114 * 4 2 1 7 7 C 1.46495 * 120.00494 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.47326 * 180.02562 * 7 6 4 9 9 C 1.52994 * 109.49926 * 59.99400 * 8 7 6 10 10 C 1.53042 * 109.49770 * 180.02562 * 8 7 6 11 11 C 1.53039 * 109.53708 * 181.28177 * 10 8 7 12 12 C 1.53190 * 109.34034 * 298.68256 * 11 10 8 13 13 N 1.46928 * 108.77541 * 54.61698 * 12 11 10 14 14 C 1.36936 * 120.62795 * 126.41302 * 13 12 11 15 15 H 1.08004 * 119.99861 * 331.81026 * 14 13 12 16 16 C 1.38807 * 119.99828 * 151.80600 * 14 13 12 17 17 N 1.31615 * 120.00312 * 343.08138 * 16 14 13 18 18 Si 1.86802 * 119.99804 * 163.07561 * 16 14 13 19 19 H 1.48500 * 109.47401 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46859 * 120.00205 * 18 16 14 21 21 H 1.48495 * 109.47108 * 239.99980 * 18 16 14 22 22 C 1.46927 * 118.74125 * 306.39373 * 13 12 11 23 23 C 1.50697 * 109.47206 * 120.00119 * 2 1 3 24 24 C 1.38675 * 120.42158 * 239.71992 * 23 2 1 25 25 C 1.38626 * 118.42306 * 179.77974 * 24 23 2 26 26 C 1.38232 * 119.15989 * 0.51669 * 25 24 23 27 27 N 1.31852 * 120.76427 * 359.72248 * 26 25 24 28 28 C 1.31889 * 121.72514 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46665 * 60.00057 * 1 2 3 30 30 H 1.08994 * 109.46994 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46780 * 299.99778 * 1 2 3 32 32 H 0.97003 * 119.99639 * 359.97438 * 6 4 2 33 33 H 1.09000 * 109.47007 * 299.99500 * 7 6 4 34 34 H 1.08994 * 109.47438 * 59.99335 * 7 6 4 35 35 H 1.09007 * 109.46807 * 60.00032 * 9 8 7 36 36 H 1.08998 * 109.47281 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.47115 * 300.00519 * 9 8 7 38 38 H 1.09003 * 109.45558 * 301.33062 * 10 8 7 39 39 H 1.09002 * 109.45801 * 61.29028 * 10 8 7 40 40 H 1.09005 * 109.49320 * 178.70946 * 11 10 8 41 41 H 1.09006 * 109.47055 * 58.63754 * 11 10 8 42 42 H 1.09001 * 109.58407 * 294.83374 * 12 11 10 43 43 H 1.08993 * 109.58841 * 174.40882 * 12 11 10 44 44 H 0.96998 * 120.00300 * 179.97438 * 17 16 14 45 45 H 1.08999 * 109.58591 * 293.82285 * 22 13 12 46 46 H 1.08997 * 109.58255 * 173.39617 * 22 13 12 47 47 H 1.07997 * 120.78293 * 0.02572 * 24 23 2 48 48 H 1.07993 * 120.42085 * 180.26468 * 25 24 23 49 49 H 1.08002 * 119.61631 * 179.74583 * 26 25 24 50 50 H 1.08004 * 119.61556 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1192 6 7 1.7069 -0.2499 -2.4546 7 6 2.1947 -0.9408 -3.6507 8 6 1.6854 -0.2191 -4.9000 9 6 2.1960 1.2231 -4.9005 10 6 2.1942 -0.9407 -6.1500 11 6 1.7117 -0.2012 -7.4000 12 6 0.1801 -0.2018 -7.4303 13 7 -0.3181 0.3595 -6.1671 14 6 -1.2054 1.4025 -6.1690 15 1 -1.2102 2.1059 -6.9886 16 6 -2.0987 1.5556 -5.1177 17 7 -2.3325 0.5503 -4.3010 18 14 -2.9689 3.1886 -4.8619 19 1 -2.5362 4.1495 -5.9082 20 1 -4.4373 2.9866 -4.9529 21 1 -2.6256 3.7278 -3.5216 22 6 0.1534 -0.2199 -4.9019 23 6 2.0324 -0.7104 1.2304 24 6 2.8350 -0.0466 2.1460 25 6 3.2700 -0.7386 3.2657 26 6 2.9009 -2.0611 3.4257 27 7 2.1404 -2.6619 2.5318 28 6 1.7034 -2.0331 1.4580 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1489 0.5385 -2.5436 33 1 3.2847 -0.9412 -3.6509 34 1 1.8311 -1.9683 -3.6506 35 1 3.2861 1.2226 -4.9005 36 1 1.8325 1.7370 -5.7903 37 1 1.8330 1.7374 -4.0105 38 1 3.2839 -0.9626 -6.1383 39 1 1.8108 -1.9610 -6.1616 40 1 2.0935 -0.7026 -8.2893 41 1 2.0748 0.8264 -7.3770 42 1 -0.1827 -1.2233 -7.5445 43 1 -0.1691 0.4076 -8.2638 44 1 -2.9565 0.6575 -3.5661 45 1 -0.2115 -1.2429 -4.8100 46 1 -0.2134 0.3775 -4.0674 47 1 3.1111 0.9861 1.9924 48 1 3.8927 -0.2518 4.0016 49 1 3.2391 -2.6084 4.2932 50 1 1.0825 -2.5586 0.7474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716901721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:01:08 Heat of formation + Delta-G solvation = 5.387794 kcal Electronic energy + Delta-G solvation = -29519.479812 eV Core-core repulsion = 25739.548857 eV Total energy + Delta-G solvation = -3779.930956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.63521 -39.46483 -38.30803 -34.85340 -34.56417 -33.22839 -32.20082 -31.40219 -29.98503 -29.59443 -26.62380 -25.80954 -25.34999 -24.68507 -23.58989 -22.55560 -21.98617 -20.54622 -19.83976 -18.05502 -17.22037 -17.13520 -16.66544 -16.19458 -15.88951 -15.20827 -14.85505 -14.66187 -14.16799 -13.98126 -13.89351 -13.86250 -13.60359 -13.36628 -13.17077 -13.13414 -12.82937 -12.67351 -12.38744 -12.24711 -12.14224 -11.70648 -11.45295 -11.40938 -11.33823 -11.01548 -10.90101 -10.70034 -10.42582 -10.22144 -10.12836 -9.94327 -9.86891 -9.68870 -9.46941 -9.45208 -9.40709 -8.98681 -8.72216 -8.54235 -6.71192 -5.85858 -3.28030 1.06369 1.23738 2.82866 3.28887 3.39170 3.40544 3.41099 3.85343 4.31438 4.42308 4.61154 4.65468 4.85288 4.91558 5.03578 5.11732 5.12492 5.19712 5.25339 5.41139 5.47929 5.49254 5.55314 5.66378 5.74890 5.77457 5.80828 5.94618 6.01371 6.01771 6.06493 6.11284 6.14072 6.23544 6.26061 6.37972 6.40957 6.51274 6.58871 6.65188 6.73707 6.80410 6.85265 6.93334 7.01051 7.24756 7.52621 7.73115 7.78489 7.95940 8.37386 8.44460 9.14532 9.77624 10.35450 11.21938 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.003442 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.996932 B = 8131.756348 C = 9506.827752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.069 4.069 3 H 0.104 0.896 4 C 0.516 3.484 5 O -0.544 6.544 6 N -0.713 5.713 7 C 0.137 3.863 8 C -0.103 4.103 9 C -0.126 4.126 10 C -0.095 4.095 11 C -0.135 4.135 12 C 0.143 3.857 13 N -0.589 5.589 14 C -0.248 4.248 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.901 5.901 18 Si 0.896 3.104 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.187 3.813 23 C -0.112 4.112 24 C -0.071 4.071 25 C -0.178 4.178 26 C 0.092 3.908 27 N -0.487 5.487 28 C 0.135 3.865 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.406 0.594 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.017 0.983 43 H 0.052 0.948 44 H 0.253 0.747 45 H 0.017 0.983 46 H 0.088 0.912 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.152 0.848 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.043 0.544 9.399 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 H 0.122 0.878 4 C 0.301 3.699 5 O -0.422 6.422 6 N -0.365 5.365 7 C 0.013 3.987 8 C -0.105 4.105 9 C -0.183 4.183 10 C -0.133 4.133 11 C -0.174 4.174 12 C 0.017 3.983 13 N -0.311 5.311 14 C -0.377 4.377 15 H 0.083 0.917 16 C -0.195 4.195 17 N -0.546 5.546 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.061 3.939 23 C -0.114 4.114 24 C -0.097 4.097 25 C -0.198 4.198 26 C -0.065 4.065 27 N -0.195 5.195 28 C -0.022 4.022 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.243 0.757 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.106 0.894 47 H 0.150 0.850 48 H 0.150 0.850 49 H 0.169 0.831 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.173 -1.036 9.704 14.097 hybrid contribution -0.478 2.097 -0.005 2.151 sum 9.695 1.061 9.698 13.754 Atomic orbital electron populations 1.21832 0.91138 1.03595 1.03582 1.20246 0.98316 1.00056 0.90449 0.87765 1.20322 0.80358 0.84677 0.84551 1.90703 1.38294 1.26358 1.86844 1.46052 1.52937 1.32235 1.05285 1.21375 0.97912 0.96065 0.83395 1.21545 1.01236 0.95198 0.92531 1.21719 0.98243 0.95797 1.02519 1.21347 0.98672 0.98774 0.94552 1.22046 0.99072 1.00140 0.96154 1.20933 0.91006 0.96379 0.90020 1.43997 1.49725 1.38002 0.99378 1.19210 1.10008 1.01472 1.07045 0.91746 1.25004 0.97054 0.97226 1.00235 1.70047 1.36928 1.28629 1.18964 0.86313 0.79319 0.83991 0.77732 1.20322 1.21776 1.21574 1.20778 0.85613 0.97094 0.90459 1.20368 0.99018 0.95947 0.96066 1.21457 0.94793 1.00123 0.93314 1.22053 1.02365 0.96364 0.99012 1.22748 0.93987 0.92305 0.97464 1.67723 1.10444 1.38547 1.02773 1.22556 0.95542 0.90929 0.93171 0.90463 0.91570 0.91421 0.75742 0.92396 0.91848 0.94573 0.90963 0.93731 0.93430 0.92574 0.93222 0.91981 0.96557 0.92944 0.93736 0.96459 0.89406 0.84984 0.84973 0.83054 0.83043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.91 37.16 0.33 -1.36 16 2 C -0.07 -0.83 2.92 -92.92 -0.27 -1.10 16 3 H 0.10 1.04 7.93 -51.93 -0.41 0.62 16 4 C 0.52 7.86 7.03 -10.99 -0.08 7.78 16 5 O -0.54 -10.05 15.13 5.55 0.08 -9.97 16 6 N -0.71 -10.82 4.89 -60.30 -0.29 -11.12 16 7 C 0.14 2.19 4.57 -4.04 -0.02 2.17 16 8 C -0.10 -1.74 0.53 -154.39 -0.08 -1.82 16 9 C -0.13 -2.04 7.81 37.15 0.29 -1.75 16 10 C -0.10 -1.51 4.71 -26.69 -0.13 -1.64 16 11 C -0.13 -2.20 5.74 -26.61 -0.15 -2.35 16 12 C 0.14 2.84 6.52 -3.71 -0.02 2.81 16 13 N -0.59 -13.53 2.43 -172.32 -0.42 -13.95 16 14 C -0.25 -6.30 9.58 -15.06 -0.14 -6.44 16 15 H 0.06 1.64 7.89 -52.48 -0.41 1.23 16 16 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 17 N -0.90 -24.01 11.20 55.49 0.62 -23.39 16 18 Si 0.90 20.29 29.59 -169.99 -5.03 15.26 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.19 3.97 3.72 -3.71 -0.01 3.96 16 23 C -0.11 -1.42 4.40 -104.48 -0.46 -1.88 16 24 C -0.07 -0.76 9.81 -39.28 -0.39 -1.14 16 25 C -0.18 -1.75 10.11 -39.44 -0.40 -2.15 16 26 C 0.09 1.03 11.18 -17.55 -0.20 0.84 16 27 N -0.49 -6.93 10.36 -13.25 -0.14 -7.06 16 28 C 0.14 1.93 9.13 -17.55 -0.16 1.77 16 29 H 0.08 0.98 7.56 -51.93 -0.39 0.58 16 30 H 0.07 0.82 7.41 -51.93 -0.39 0.43 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.41 6.07 5.64 -40.82 -0.23 5.83 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 37 H 0.04 0.71 6.87 -51.93 -0.36 0.35 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.02 6.34 -51.93 -0.33 0.70 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 1.03 7.93 -51.93 -0.41 0.61 16 44 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 2.02 4.97 -51.93 -0.26 1.76 16 47 H 0.13 1.07 8.00 -52.49 -0.42 0.65 16 48 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 49 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 50 H 0.15 2.20 7.53 -52.48 -0.40 1.80 16 LS Contribution 388.24 15.07 5.85 5.85 Total: -1.00 -30.06 388.24 -9.40 -39.46 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.10 Total: 7.23 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.97 Total: -2.31 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.23 Total: -55.52 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.06 -9.40 -39.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716901721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.849 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds