Wall clock time and date at job start Sat Apr 11 2020 03:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 5 5 C 1.36933 * 119.99983 * 84.99832 * 4 2 1 6 6 H 1.08002 * 120.00189 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00422 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00472 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99616 * 359.97438 * 7 5 4 10 10 H 1.48509 * 109.46627 * 90.00015 * 9 7 5 11 11 H 1.48499 * 109.47196 * 209.99956 * 9 7 5 12 12 H 1.48496 * 109.47418 * 330.00510 * 9 7 5 13 13 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 14 14 H 1.09002 * 109.46642 * 185.00070 * 13 2 1 15 15 C 1.52993 * 109.47345 * 65.00157 * 13 2 1 16 16 N 1.46504 * 109.47054 * 304.99656 * 13 2 1 17 17 C 1.34779 * 120.00082 * 205.00252 * 16 13 2 18 18 O 1.21623 * 119.99777 * 0.02562 * 17 16 13 19 19 C 1.47264 * 119.99941 * 180.02562 * 17 16 13 20 20 C 1.46681 * 126.94360 * 359.68750 * 19 17 16 21 21 C 1.34478 * 106.33381 * 179.88786 * 20 19 17 22 22 C 1.50703 * 125.57314 * 180.16156 * 21 20 19 23 23 C 1.52999 * 117.50017 * 33.99487 * 22 21 20 24 24 C 1.53001 * 117.49966 * 325.33392 * 22 21 20 25 25 N 1.36447 * 108.85718 * 0.37598 * 21 20 19 26 26 H 0.96998 * 124.85413 * 179.73198 * 25 21 20 27 27 C 1.34662 * 110.29639 * 359.74795 * 25 21 20 28 28 C 1.50696 * 125.80320 * 179.97438 * 27 25 21 29 29 C 1.53005 * 117.49860 * 8.65099 * 28 27 25 30 30 C 1.52997 * 117.49868 * 300.02942 * 28 27 25 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 33 33 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 34 34 H 0.96997 * 120.00274 * 264.99726 * 4 2 1 35 35 H 0.97001 * 119.99778 * 180.02562 * 8 7 5 36 36 H 1.08993 * 109.47639 * 59.99724 * 15 13 2 37 37 H 1.09004 * 109.47135 * 179.97438 * 15 13 2 38 38 H 1.09002 * 109.47179 * 299.99584 * 15 13 2 39 39 H 0.97001 * 119.99798 * 25.00179 * 16 13 2 40 40 H 1.08003 * 126.83233 * 0.02562 * 20 19 17 41 41 H 1.08996 * 115.54951 * 179.66497 * 22 21 20 42 42 H 1.09002 * 117.49320 * 0.02562 * 23 22 21 43 43 H 1.09000 * 117.49670 * 145.02153 * 23 22 21 44 44 H 1.08994 * 117.50143 * 214.98026 * 24 22 21 45 45 H 1.09000 * 117.49769 * 359.97438 * 24 22 21 46 46 H 1.08999 * 115.55400 * 154.35486 * 28 27 25 47 47 H 1.09008 * 117.49646 * 359.97438 * 29 28 27 48 48 H 1.08997 * 117.50189 * 145.01913 * 29 28 27 49 49 H 1.09001 * 117.50253 * 214.97777 * 30 28 27 50 50 H 1.08998 * 117.50257 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3757 6 1 1.8925 1.0405 -2.4241 7 6 2.6122 -0.6616 -3.5091 8 7 2.7383 -0.0049 -4.6427 9 14 3.0579 -2.4738 -3.4249 10 1 1.8611 -3.2931 -3.7441 11 1 4.1335 -2.7651 -4.4064 12 1 3.5330 -2.8037 -2.0572 13 6 2.0400 -0.7213 1.2492 14 1 3.1263 -0.6444 1.2951 15 6 1.6353 -2.1955 1.1879 16 7 1.4558 -0.1037 2.4424 17 6 2.0913 -0.1938 3.6276 18 8 3.1498 -0.7875 3.7064 19 6 1.5038 0.4265 4.8270 20 6 0.2471 1.1789 4.9048 21 6 0.1092 1.5532 6.1890 22 6 -1.0400 2.3495 6.7516 23 6 -2.4243 2.1194 6.1420 24 6 -1.6664 3.4175 5.8528 25 7 1.1821 1.0982 6.8987 26 1 1.3198 1.2412 7.8481 27 6 2.0228 0.4224 6.0924 28 6 3.3159 -0.2272 6.5128 29 6 3.6196 -0.2920 8.0110 30 6 4.3964 0.6739 7.1140 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3635 0.5138 -0.8899 34 1 2.2490 -1.6317 -1.1527 35 1 3.0616 -0.4622 -5.4347 36 1 2.0698 -2.6550 0.3002 37 1 1.9990 -2.7094 2.0777 38 1 0.5489 -2.2724 1.1420 39 1 0.6118 0.3701 2.3794 40 1 -0.4333 1.3886 4.0926 41 1 -0.9890 2.5578 7.8202 42 1 -2.5039 1.3917 5.3344 43 1 -3.2840 2.1768 6.8096 44 1 -2.0278 4.3283 6.3301 45 1 -1.2470 3.5445 4.8547 46 1 3.6442 -1.0637 5.8959 47 1 2.8842 0.1357 8.6925 48 1 4.1476 -1.1712 8.3800 49 1 5.4355 0.4300 6.8929 50 1 4.1722 1.7366 7.2050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717414721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:02:29 Heat of formation + Delta-G solvation = 69.205740 kcal Electronic energy + Delta-G solvation = -28429.393957 eV Core-core repulsion = 24652.230355 eV Total energy + Delta-G solvation = -3777.163602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73735 -39.25763 -37.81460 -36.81661 -36.62353 -33.85894 -31.98772 -31.13141 -29.44748 -29.21064 -28.50730 -24.64441 -24.09314 -23.84279 -22.75034 -22.73230 -22.30943 -21.01400 -20.14318 -19.58064 -19.07285 -17.89567 -17.69471 -16.14736 -15.91914 -15.62599 -15.15476 -15.02123 -14.72318 -14.69743 -14.17315 -13.99561 -13.95553 -13.70552 -13.51384 -12.96926 -12.65190 -12.51077 -12.19084 -12.00051 -11.99572 -11.93960 -11.90667 -11.67635 -11.46806 -11.40614 -11.03762 -10.90159 -10.85675 -10.74233 -10.68795 -10.53051 -10.24144 -9.96513 -9.62401 -9.50043 -9.03442 -8.91989 -8.67154 -8.06889 -7.26826 -5.74786 -3.10644 1.60170 2.06100 2.74591 3.40718 3.44006 3.46844 3.48220 3.58009 3.63528 3.80158 4.18803 4.28698 4.48037 4.52984 4.61798 4.62048 4.64675 4.69869 4.93370 5.06948 5.23823 5.27951 5.29795 5.31717 5.37442 5.39808 5.49207 5.52670 5.58371 5.62836 5.65510 5.72484 5.75146 5.75343 5.87679 6.01301 6.06850 6.12315 6.23524 6.34483 6.46653 6.54858 6.56897 6.73193 6.76208 6.93679 7.04984 7.17248 7.89169 8.01384 8.44049 8.60182 9.22471 9.94819 10.14135 11.43469 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.002835 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.705626 B = 9873.320366 C =11340.067997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.173 3.827 3 H 0.060 0.940 4 N -0.744 5.744 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.934 5.934 9 Si 0.880 3.120 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 C 0.135 3.865 14 H 0.089 0.911 15 C -0.161 4.161 16 N -0.714 5.714 17 C 0.589 3.411 18 O -0.552 6.552 19 C -0.216 4.216 20 C -0.161 4.161 21 C 0.049 3.951 22 C -0.097 4.097 23 C -0.165 4.165 24 C -0.165 4.165 25 N -0.547 5.547 26 H 0.411 0.589 27 C 0.136 3.864 28 C -0.087 4.087 29 C -0.185 4.185 30 C -0.164 4.164 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.061 0.939 34 H 0.363 0.637 35 H 0.259 0.741 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.397 0.603 40 H 0.144 0.856 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.146 0.854 47 H 0.086 0.914 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 3.730 29.982 31.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.063 3.937 3 H 0.078 0.922 4 N -0.389 5.389 5 C -0.372 4.372 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.030 3.970 14 H 0.107 0.893 15 C -0.219 4.219 16 N -0.366 5.366 17 C 0.377 3.623 18 O -0.431 6.431 19 C -0.226 4.226 20 C -0.185 4.185 21 C -0.060 4.060 22 C -0.116 4.116 23 C -0.202 4.202 24 C -0.202 4.202 25 N -0.142 5.142 26 H 0.248 0.752 27 C 0.019 3.981 28 C -0.106 4.106 29 C -0.222 4.222 30 C -0.202 4.202 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.198 0.802 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.233 0.767 40 H 0.162 0.838 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.163 0.837 47 H 0.104 0.896 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.787 3.515 29.931 30.891 hybrid contribution -0.114 -0.938 0.319 0.997 sum -6.901 2.577 30.249 31.133 Atomic orbital electron populations 1.22488 0.98856 1.01247 1.00222 1.20328 0.92308 0.95879 0.85187 0.92198 1.42801 1.79771 1.09576 1.06712 1.19059 1.37046 0.95674 0.85420 0.89125 1.24645 1.01322 0.97480 0.95564 1.69698 1.52660 1.35541 1.00267 0.86610 0.78212 0.86901 0.77224 1.21033 1.21686 1.20146 1.21272 0.99175 0.92512 0.84020 0.89337 1.22163 1.01643 0.96257 1.01835 1.45951 1.25825 1.56853 1.07970 1.17309 0.83707 0.78961 0.82324 1.90718 1.22598 1.44197 1.85623 1.20099 0.98882 1.10662 0.92929 1.21697 0.97883 1.03530 0.95408 1.19184 0.90789 1.04485 0.91549 1.20269 0.91162 1.01910 0.98229 1.23106 0.93462 1.00210 1.03447 1.23116 1.02992 0.93027 1.01090 1.41293 1.18029 1.44054 1.10868 0.75218 1.19227 0.92266 0.97132 0.89492 1.20857 0.91309 1.02515 0.95872 1.23021 1.03780 1.02799 0.92601 1.23019 0.97567 0.96820 1.02762 0.92944 0.94526 0.91957 0.80242 0.93057 0.91615 0.92726 0.92284 0.76666 0.83815 0.87377 0.87948 0.88319 0.88297 0.87884 0.83668 0.89552 0.87776 0.87710 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.01 37.16 0.33 -2.45 16 2 C 0.17 3.31 2.93 -67.93 -0.20 3.11 16 3 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 4 N -0.74 -17.54 4.84 -53.43 -0.26 -17.80 16 5 C -0.24 -6.81 10.41 -15.06 -0.16 -6.96 16 6 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.44 13.97 55.49 0.78 -28.66 16 9 Si 0.88 22.31 27.73 -169.99 -4.71 17.60 16 10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 13 C 0.14 2.34 2.62 -67.93 -0.18 2.16 16 14 H 0.09 1.74 7.58 -51.93 -0.39 1.34 16 15 C -0.16 -2.66 9.00 37.15 0.33 -2.32 16 16 N -0.71 -10.54 4.99 -54.93 -0.27 -10.81 16 17 C 0.59 9.29 7.77 -12.59 -0.10 9.19 16 18 O -0.55 -10.24 14.55 5.26 0.08 -10.16 16 19 C -0.22 -2.84 6.29 -103.35 -0.65 -3.49 16 20 C -0.16 -1.72 9.46 -37.50 -0.35 -2.07 16 21 C 0.05 0.44 6.83 -81.87 -0.56 -0.12 16 22 C -0.10 -0.64 6.33 -91.77 -0.58 -1.22 16 23 C -0.16 -0.98 10.04 -26.69 -0.27 -1.24 16 24 C -0.16 -0.99 10.04 -26.69 -0.27 -1.26 16 25 N -0.55 -4.70 5.80 -5.42 -0.03 -4.74 16 26 H 0.41 2.38 7.84 -40.82 -0.32 2.06 16 27 C 0.14 1.55 6.69 -81.88 -0.55 1.00 16 28 C -0.09 -0.92 5.61 -91.77 -0.51 -1.44 16 29 C -0.18 -1.35 10.13 -26.73 -0.27 -1.62 16 30 C -0.16 -1.41 10.23 -26.73 -0.27 -1.69 16 31 H 0.05 0.85 6.56 -51.93 -0.34 0.51 16 32 H 0.04 0.48 6.29 -51.93 -0.33 0.15 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.36 8.47 3.63 -40.82 -0.15 8.32 16 35 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 36 H 0.07 1.16 6.29 -51.93 -0.33 0.83 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.90 6.56 -51.93 -0.34 0.55 16 39 H 0.40 5.00 5.70 -40.82 -0.23 4.76 16 40 H 0.14 1.31 7.70 -52.48 -0.40 0.91 16 41 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.66 7.91 -51.93 -0.41 0.25 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.69 7.93 -51.93 -0.41 0.28 16 46 H 0.15 1.87 6.64 -51.93 -0.35 1.53 16 47 H 0.09 0.48 7.08 -51.92 -0.37 0.12 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -33.84 398.80 -10.52 -44.36 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -7.76 Total: 14.56 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -4.35 Total: -10.35 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 0.21 Total: -62.01 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.84 -10.52 -44.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717414721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.566 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds