Wall clock time and date at job start Sat Apr 11 2020 02:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.47239 * 2 1 4 4 C 1.36943 * 119.99810 * 263.89242 * 3 2 1 5 5 H 1.07991 * 119.99829 * 190.11512 * 4 3 2 6 6 C 1.38808 * 120.00027 * 10.12365 * 4 3 2 7 7 N 1.31621 * 120.00236 * 27.16925 * 6 4 3 8 8 Si 1.86800 * 119.99922 * 207.16629 * 6 4 3 9 9 H 1.48498 * 109.47159 * 94.99128 * 8 6 4 10 10 H 1.48507 * 109.47071 * 214.99183 * 8 6 4 11 11 H 1.48499 * 109.46837 * 334.99025 * 8 6 4 12 12 C 1.46498 * 119.99779 * 83.89228 * 3 2 1 13 13 C 1.50694 * 109.47000 * 269.99886 * 12 3 2 14 14 O 1.21296 * 120.00640 * 0.28280 * 13 12 3 15 15 N 1.34783 * 119.99776 * 180.02562 * 13 12 3 16 16 C 1.40156 * 119.99855 * 174.88182 * 15 13 12 17 17 C 1.38847 * 119.99518 * 326.58107 * 16 15 13 18 18 C 1.38070 * 120.00114 * 179.77032 * 17 16 15 19 19 C 1.38890 * 119.99503 * 0.51955 * 18 17 16 20 20 N 1.39888 * 120.00434 * 179.70567 * 19 18 17 21 21 C 1.46844 * 110.99898 * 124.23550 * 20 19 18 22 22 C 1.53045 * 109.51998 * 174.16001 * 21 20 19 23 23 C 1.53118 * 109.27640 * 59.18054 * 22 21 20 24 24 C 1.53119 * 109.16140 * 302.34072 * 23 22 21 25 25 C 1.46851 * 110.99826 * 0.02562 * 20 19 18 26 26 C 1.38890 * 119.98889 * 359.73404 * 19 18 17 27 27 C 1.38065 * 119.99632 * 359.97438 * 26 19 18 28 28 H 1.08999 * 109.47230 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46593 * 299.99851 * 1 2 3 30 30 H 1.08997 * 109.47032 * 59.99521 * 1 2 3 31 31 H 1.09004 * 109.46964 * 240.00535 * 2 1 3 32 32 H 1.08995 * 109.47412 * 120.00108 * 2 1 3 33 33 H 0.96999 * 120.00111 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46847 * 150.00134 * 12 3 2 35 35 H 1.08994 * 109.47298 * 30.00174 * 12 3 2 36 36 H 0.96998 * 120.00044 * 354.88389 * 15 13 12 37 37 H 1.08001 * 119.99987 * 359.97438 * 17 16 15 38 38 H 1.08003 * 119.99822 * 180.25155 * 18 17 16 39 39 H 1.08997 * 109.46094 * 294.17271 * 21 20 19 40 40 H 1.08990 * 109.46150 * 54.14737 * 21 20 19 41 41 H 1.08997 * 109.50400 * 299.23586 * 22 21 20 42 42 H 1.08997 * 109.50045 * 179.11990 * 22 21 20 43 43 H 1.09003 * 109.51930 * 182.43529 * 23 22 21 44 44 H 1.09004 * 109.52685 * 62.25040 * 23 22 21 45 45 H 1.08994 * 109.50669 * 297.71537 * 24 23 22 46 46 H 1.08999 * 109.50245 * 177.59765 * 24 23 22 47 47 H 1.08997 * 109.46060 * 305.85472 * 25 20 19 48 48 H 1.08997 * 109.46513 * 65.82233 * 25 20 19 49 49 H 1.08003 * 119.99679 * 180.02562 * 26 19 18 50 50 H 1.08003 * 119.99389 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3656 1.9847 -1.1792 5 1 2.8761 2.9363 -1.1690 6 6 2.0612 1.3734 -2.3877 7 7 1.0331 0.5558 -2.4711 8 14 3.1106 1.7110 -3.8957 9 1 4.1444 0.6530 -4.0263 10 1 2.2507 1.7151 -5.1064 11 1 3.7709 3.0335 -3.7531 12 6 2.1353 2.1168 1.2615 13 6 0.8435 2.8400 1.5429 14 8 -0.0855 2.7457 0.7687 15 7 0.7185 3.5874 2.6575 16 6 -0.4417 4.3453 2.8666 17 6 -1.1099 4.9043 1.7855 18 6 -2.2555 5.6470 1.9909 19 6 -2.7336 5.8439 3.2800 20 7 -3.8908 6.6015 3.4888 21 6 -4.8944 5.8338 4.2371 22 6 -6.0834 6.7371 4.5726 23 6 -6.6901 7.2771 3.2746 24 6 -5.6119 8.0311 2.4914 25 6 -4.4366 7.0903 2.2161 26 6 -2.0620 5.2889 4.3617 27 6 -0.9198 4.5413 4.1554 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 0.8206 0.1283 -3.3155 34 1 2.9476 2.8399 1.1866 35 1 2.3444 1.4181 2.0715 36 1 1.4316 3.6007 3.3150 37 1 -0.7353 4.7555 0.7835 38 1 -2.7775 6.0784 1.1495 39 1 -5.2356 4.9945 3.6311 40 1 -4.4513 5.4591 5.1596 41 1 -5.7454 7.5692 5.1902 42 1 -6.8350 6.1630 5.1144 43 1 -7.5103 7.9553 3.5105 44 1 -7.0635 6.4475 2.6742 45 1 -5.2664 8.8836 3.0761 46 1 -6.0266 8.3814 1.5463 47 1 -3.6609 7.6281 1.6711 48 1 -4.7799 6.2451 1.6196 49 1 -2.4339 5.4416 5.3642 50 1 -0.3979 4.1094 4.9965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072582977.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:53 Heat of formation + Delta-G solvation = 31.998813 kcal Electronic energy + Delta-G solvation = -28667.046416 eV Core-core repulsion = 24888.269401 eV Total energy + Delta-G solvation = -3778.777015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.46865 -39.35503 -37.54181 -35.63303 -34.46753 -32.81497 -31.67800 -31.32980 -30.36703 -29.63900 -28.24863 -26.37901 -24.47881 -24.08112 -23.26061 -21.96387 -21.49804 -20.53572 -19.87000 -19.53840 -17.74802 -16.98687 -16.67790 -16.25785 -15.43995 -15.14460 -14.92528 -14.67517 -14.44901 -14.26479 -14.01910 -13.85666 -13.53466 -13.44833 -13.29057 -13.08207 -12.87971 -12.49323 -12.32326 -12.10269 -11.81292 -11.66359 -11.49606 -11.36532 -11.13398 -11.08247 -10.81680 -10.74588 -10.69693 -10.54119 -10.42499 -10.17336 -9.95014 -9.68941 -9.27120 -9.14241 -8.82974 -8.69006 -8.31803 -7.28128 -6.91158 -5.74144 -3.06778 1.50016 1.60472 3.36535 3.39921 3.47542 3.49640 3.60039 3.71012 4.08112 4.50301 4.51570 4.56897 4.65842 4.91089 5.02194 5.07811 5.12955 5.24172 5.31651 5.34673 5.41268 5.47327 5.49780 5.54374 5.59257 5.59561 5.66212 5.76313 5.82068 5.82812 5.91633 6.07000 6.09209 6.17937 6.21875 6.23809 6.39022 6.60266 6.66857 6.78650 7.00985 7.02307 7.10156 7.18489 7.25779 7.46323 7.65550 7.82107 7.98095 8.30867 8.36711 8.98933 9.23672 9.83277 10.27522 11.28266 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.017856 B = 0.002564 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.737123 B =10915.774801 C =11544.163493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.169 3.831 3 N -0.566 5.566 4 C -0.255 4.255 5 H 0.074 0.926 6 C 0.004 3.996 7 N -0.882 5.882 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.294 1.294 11 H -0.280 1.280 12 C 0.133 3.867 13 C 0.464 3.536 14 O -0.484 6.484 15 N -0.692 5.692 16 C 0.141 3.859 17 C -0.096 4.096 18 C -0.147 4.147 19 C 0.079 3.921 20 N -0.486 5.486 21 C 0.056 3.944 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.118 4.118 25 C 0.049 3.951 26 C -0.121 4.121 27 C -0.135 4.135 28 H 0.010 0.990 29 H 0.017 0.983 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.004 0.996 33 H 0.251 0.749 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.401 0.599 37 H 0.137 0.863 38 H 0.125 0.875 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.045 0.955 49 H 0.122 0.878 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.546 11.240 15.926 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 N -0.284 5.284 4 C -0.384 4.384 5 H 0.092 0.908 6 C -0.194 4.194 7 N -0.526 5.526 8 Si 0.728 3.272 9 H -0.215 1.215 10 H -0.220 1.220 11 H -0.206 1.206 12 C -0.001 4.001 13 C 0.249 3.751 14 O -0.354 6.354 15 N -0.341 5.341 16 C 0.045 3.955 17 C -0.117 4.117 18 C -0.168 4.168 19 C -0.019 4.019 20 N -0.202 5.202 21 C -0.069 4.069 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.078 4.078 26 C -0.142 4.142 27 C -0.156 4.156 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.022 0.978 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.236 0.764 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.063 0.937 49 H 0.140 0.860 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.150 11.404 15.367 21.661 hybrid contribution 0.389 -0.341 -0.878 1.019 sum -9.761 11.063 14.489 20.678 Atomic orbital electron populations 1.22329 0.98369 0.97254 1.02591 1.20807 0.93186 0.83765 0.97860 1.44310 1.73526 1.09450 1.01116 1.19219 1.30404 1.05499 0.83298 0.90816 1.24767 0.97035 1.00339 0.97297 1.70232 1.23801 1.33750 1.24803 0.86335 0.80367 0.77807 0.82729 1.21541 1.22031 1.20580 1.20991 0.92430 0.95331 0.91299 1.24043 0.93335 0.78340 0.79412 1.90707 1.40111 1.59224 1.45351 1.44442 1.17970 1.46783 1.24876 1.17894 0.90128 0.94103 0.93331 1.21115 0.95643 0.95315 0.99631 1.21170 0.98640 1.01461 0.95575 1.18812 0.93792 0.96046 0.93215 1.59205 1.04532 1.36184 1.20314 1.22230 0.91859 0.94543 0.98293 1.21622 0.96482 0.99755 0.97716 1.21606 0.97869 0.99995 0.96649 1.21614 0.94955 0.98486 1.00490 1.22267 0.97257 0.98299 0.89979 1.20438 0.96020 1.00205 0.97531 1.20735 0.97297 1.02024 0.95556 0.97146 0.96386 0.88369 0.89978 0.97778 0.93823 0.90414 0.91268 0.76440 0.84523 0.85763 0.94072 0.90188 0.91023 0.91328 0.91721 0.92107 0.91042 0.91251 0.89935 0.93720 0.86029 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 8.71 37.16 0.32 -3.36 16 2 C 0.17 4.14 5.64 -4.04 -0.02 4.12 16 3 N -0.57 -13.91 2.12 -174.61 -0.37 -14.28 16 4 C -0.26 -6.91 9.67 -15.06 -0.15 -7.06 16 5 H 0.07 1.96 7.94 -52.49 -0.42 1.54 16 6 C 0.00 0.12 4.80 -17.43 -0.08 0.04 16 7 N -0.88 -25.30 8.70 55.49 0.48 -24.82 16 8 Si 0.90 21.66 29.63 -169.99 -5.04 16.63 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.13 2.56 6.19 -5.20 -0.03 2.53 16 13 C 0.46 9.19 7.28 -10.99 -0.08 9.11 16 14 O -0.48 -11.89 11.71 5.54 0.06 -11.82 16 15 N -0.69 -10.66 5.35 -9.82 -0.05 -10.72 16 16 C 0.14 2.25 6.28 -83.60 -0.53 1.72 16 17 C -0.10 -1.67 8.65 -39.42 -0.34 -2.01 16 18 C -0.15 -2.22 8.82 -39.40 -0.35 -2.56 16 19 C 0.08 1.06 5.65 -83.70 -0.47 0.59 16 20 N -0.49 -5.58 4.70 -171.09 -0.80 -6.38 16 21 C 0.06 0.56 5.26 -3.83 -0.02 0.54 16 22 C -0.12 -0.92 6.09 -26.65 -0.16 -1.08 16 23 C -0.12 -0.94 6.00 -26.61 -0.16 -1.10 16 24 C -0.12 -0.97 6.09 -26.65 -0.16 -1.13 16 25 C 0.05 0.51 4.15 -3.83 -0.02 0.49 16 26 C -0.12 -1.53 9.16 -39.40 -0.36 -1.89 16 27 C -0.13 -1.77 9.95 -39.42 -0.39 -2.16 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.02 0.44 6.41 -51.93 -0.33 0.10 16 30 H 0.10 2.85 6.12 -51.93 -0.32 2.54 16 31 H 0.08 2.21 6.05 -51.93 -0.31 1.89 16 32 H 0.00 0.09 7.98 -51.93 -0.41 -0.33 16 33 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.08 1.36 8.03 -51.93 -0.42 0.94 16 35 H 0.07 1.14 7.95 -51.93 -0.41 0.72 16 36 H 0.40 4.59 8.82 -40.82 -0.36 4.23 16 37 H 0.14 2.77 6.42 -52.49 -0.34 2.43 16 38 H 0.12 1.71 5.80 -52.48 -0.30 1.41 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.74 6.70 -51.93 -0.35 0.39 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.87 6.98 -51.93 -0.36 0.51 16 48 H 0.04 0.49 7.73 -51.93 -0.40 0.09 16 49 H 0.12 1.28 7.15 -52.48 -0.38 0.90 16 50 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -32.23 383.52 -10.99 -43.22 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.05 Total: 5.61 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -3.00 Total: -3.22 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.74 Total: -56.20 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.06 Total: -11.82 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.04 Total: 16.63 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.23 -10.99 -43.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072582977.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.223 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds